KCC001349A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001349A_C01 KCC001349A_c01
cttcgtacttctttGTTGTAGTTCCGTTCGCCTTTTGTATTTGTCCTTGATAGGAGCGCT
TTCGGCAAACAATCGAGAATGCTGCTTCTCTTTGAGACGGCAGCGGGCTTTGCCCTATTT
AAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAAGACCTCGCCAGCGACTTCGCGACC
CTTGAGGCGGCTCAAAAGGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACG
GAGGCGCTTGCAGCTGCCACTGCTCTGGTGGATAGCAAGCTCAGCAAGGGCCTGAAGAAG
TTCCTGAAGAAGCATGTGGATGAGGACGAGAAGCTCGCTCTTCTGGATAAGAAGCTGGGC
AGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAGCAACCAAGTTCTGGAGCTG
AGCCGCGGCATTCGTAGCCAGCTGACCGGCCTCATCAGCGGCCTGGCGGGTGCCGACCTG
CGCCCCATGTCCCTGGGTCTGTCGCACAGCCTGTCGCGCTACAAGCTCAAGTTCAGCCCC
GACAAGGTGGATACCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001349A_C01 KCC001349A_c01
         (556 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T06377 SAR DNA-binding protein-1 - garden pea gi|3132696|gb...   206  2e-52
dbj|BAB41076.1| MAR-binding protein [Nicotiana tabacum]               205  3e-52
dbj|BAA31260.1| SAR DNA binding protein [Oryza sativa]                195  3e-49
pir||T06379 SAR DNA-binding protein 2 - garden pea gi|3132698|gb...   187  1e-46
gb|AAH44394.1| Unknown (protein for IMAGE:2639288) [Danio rerio]      186  1e-46

>pir||T06377 SAR DNA-binding protein-1 - garden pea gi|3132696|gb|AAC16330.1|
           SAR DNA-binding protein-1 [Pisum sativum]
          Length = 560

 Score =  206 bits (524), Expect = 2e-52
 Identities = 109/159 (68%), Positives = 130/159 (81%)
 Frame = +1

Query: 79  MLLLFETAAGFALFKVLKEKKLEEAEDLASDFATLEAAQKVVKLKAFSKFENTTEALAAA 258
           ML+LFET AGFALFKVL E KL E +DL+ DF+T +AA+KVVKLKAFSKFENT EAL AA
Sbjct: 1   MLVLFETPAGFALFKVLNEGKLSEVQDLSLDFSTADAARKVVKLKAFSKFENTAEALEAA 60

Query: 259 TALVDSKLSKGLKKFLKKHVDEDEKLALLDKKLGSIVQEKLGLNVLWSNQVLELSRGIRS 438
           + L+D K SKGL+KFL+ H D DE LA+ D KLG+I++EKL ++ + +N V+EL RG+R 
Sbjct: 61  SCLIDGKTSKGLRKFLRAHCD-DEILAVADSKLGNIIKEKLKIDCVHNNAVMELMRGVRY 119

Query: 439 QLTGLISGLAGADLRPMSLGLSHSLSRYKLKFSPDKVDT 555
           QLT LISGLA  D+ PMSLGLSHSLSRYKLKFS DKVDT
Sbjct: 120 QLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDT 158

>dbj|BAB41076.1| MAR-binding protein [Nicotiana tabacum]
          Length = 555

 Score =  205 bits (522), Expect = 3e-52
 Identities = 108/159 (67%), Positives = 130/159 (80%)
 Frame = +1

Query: 79  MLLLFETAAGFALFKVLKEKKLEEAEDLASDFATLEAAQKVVKLKAFSKFENTTEALAAA 258
           ML+LFET AGFALFKVL E KL + EDL  +F+T ++A+KVVKLKAFSKFENT+EAL+AA
Sbjct: 1   MLVLFETPAGFALFKVLDEGKLSKVEDLWKEFSTTDSARKVVKLKAFSKFENTSEALSAA 60

Query: 259 TALVDSKLSKGLKKFLKKHVDEDEKLALLDKKLGSIVQEKLGLNVLWSNQVLELSRGIRS 438
           T L+DSK SKGL+KFLK H D  E L + D KLG+ ++EKL ++ + +N V+EL RG+RS
Sbjct: 61  TLLIDSKPSKGLRKFLKAHCD-GETLGVADSKLGNAIKEKLQIDCVHNNAVMELMRGVRS 119

Query: 439 QLTGLISGLAGADLRPMSLGLSHSLSRYKLKFSPDKVDT 555
           QLT LI+GL   DL PMSLGLSHSLSRYKLKFSPDKVDT
Sbjct: 120 QLTELITGLGSQDLAPMSLGLSHSLSRYKLKFSPDKVDT 158

>dbj|BAA31260.1| SAR DNA binding protein [Oryza sativa]
          Length = 485

 Score =  195 bits (496), Expect = 3e-49
 Identities = 102/159 (64%), Positives = 131/159 (82%)
 Frame = +1

Query: 79  MLLLFETAAGFALFKVLKEKKLEEAEDLASDFATLEAAQKVVKLKAFSKFENTTEALAAA 258
           ML+LFET AGFALFKVL E KL++ EDL  +F T ++A+KVV+LKAF+KFENT++AL+AA
Sbjct: 1   MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60

Query: 259 TALVDSKLSKGLKKFLKKHVDEDEKLALLDKKLGSIVQEKLGLNVLWSNQVLELSRGIRS 438
           T ++DSK +KGL+KFL+KH  E E LA+ D KLG+ ++EKL ++ L ++ V+EL R +R+
Sbjct: 61  TLIIDSKPTKGLRKFLQKHC-EGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRRLRN 119

Query: 439 QLTGLISGLAGADLRPMSLGLSHSLSRYKLKFSPDKVDT 555
           QLT LISGL   DL PMSLGLSHSLSRYKLKFSP+KVDT
Sbjct: 120 QLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDT 158

>pir||T06379 SAR DNA-binding protein 2 - garden pea gi|3132698|gb|AAC16331.1|
           SAR DNA-binding protein-2 [Pisum sativum]
          Length = 550

 Score =  187 bits (474), Expect = 1e-46
 Identities = 101/159 (63%), Positives = 123/159 (76%)
 Frame = +1

Query: 79  MLLLFETAAGFALFKVLKEKKLEEAEDLASDFATLEAAQKVVKLKAFSKFENTTEALAAA 258
           MLLLFETAAGFALFKVL E KL + EDL   F++ + A+KVVKLKAFSKFENT+EAL +A
Sbjct: 1   MLLLFETAAGFALFKVLDEGKLSKVEDLQQSFSSADTARKVVKLKAFSKFENTSEALKSA 60

Query: 259 TALVDSKLSKGLKKFLKKHVDEDEKLALLDKKLGSIVQEKLGLNVLWSNQVLELSRGIRS 438
             L+D K SK L+KFL  H  ++E L + D KL SI++EKL ++ + +  V+EL RG+R 
Sbjct: 61  NLLIDGKASKDLRKFLSVHC-QNETLGVADTKLASIIKEKLQIDCVHNVGVMELMRGVRY 119

Query: 439 QLTGLISGLAGADLRPMSLGLSHSLSRYKLKFSPDKVDT 555
           QLT LI+GLA  D+ PMSLGLSHSLSRYKLKFS DKVDT
Sbjct: 120 QLTELIAGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDT 158

>gb|AAH44394.1| Unknown (protein for IMAGE:2639288) [Danio rerio]
          Length = 519

 Score =  186 bits (473), Expect = 1e-46
 Identities = 99/161 (61%), Positives = 126/161 (77%), Gaps = 2/161 (1%)
 Frame = +1

Query: 79  MLLLFETAAGFALFKVLKEKKLEEAEDLASDFATLEAAQKVVKLKAFSKFENTTEALAAA 258
           ML+LFETAAG+A+FKVL E+KL++ + L  +F T E A KVVKLK F KF++TTEALAAA
Sbjct: 1   MLVLFETAAGYAIFKVLDEQKLQQVDSLWKEFETPEKANKVVKLKHFEKFQDTTEALAAA 60

Query: 259 TALVDSKLSKGLKKFLKKHVDED--EKLALLDKKLGSIVQEKLGLNVLWSNQVLELSRGI 432
           TA+V+ KL K LKK LKK V ++  E+LA+ D KLG +++EKL L+ + S  V EL RGI
Sbjct: 61  TAMVEGKLGKSLKKVLKKVVAKEAHEQLAITDAKLGGVIKEKLNLSCVHSPAVAELMRGI 120

Query: 433 RSQLTGLISGLAGADLRPMSLGLSHSLSRYKLKFSPDKVDT 555
           R+Q+ GLI+GL   ++  MSLGL+HSLSRYKLKFSPDKVDT
Sbjct: 121 RNQMEGLITGLPAREIAAMSLGLAHSLSRYKLKFSPDKVDT 161



EST assemble image


clone accession position
1 CM040a05_r AV389186 1 556
2 HCL048h06_r AV642279 15 172




Chlamydomonas reinhardtii
Kazusa DNA Research Institute