KCC001345A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001345A_C01 KCC001345A_c01
GGCAAGCTGCGTCAGCCGGCGGAGGTGGATTCTTAGAGGCCTCGCTCGTTGCTTCACGGC
AAGCTTGCAAGATTACTGTGGGCAAAGTCGGCGTGGTTTTGATGGCTTGAGTATTGCTCG
GCAGGGGGGTTCAATGGCTTGTTATGCTTGTTGGCATGTATGGGCTACGTCCTTGGGCGC
AGCCTCACGCCACATTTGTTCGCACGTGCATGGGTTTGCCTTCGTACACGTCTTAGCCGT
GTTGCATGTCCTGTTGCACGCGGTGCCAACAAGCTCGTGCCAGGGCGCACGGAATGCTGG
CAGAATTGACACGCACGCCATTTCTGATTACTTTATTTGAAGCATTCGTCCCATGGCACG
CCAATATGTTCGACACCAATCTCGTGCAAGATGCGAGACTGCTTCACGCATGTGCAACGT
TCATCGATGATTCTGCACCGTGACTGCCATGGAGCGTTGCGGGCTCCTGCACTGCATGTG
TGGTGACACACTACTTGTCTGCAGTGTTGATATCTGTACGGACAACCTATATACCGCTTC
CTCGACTCTTTTGCTTTCCTGTTGTGAGCATGAGCATGTTACATGGCTTACAGTGCTGTG
TTGATGATGCAGTCATTGCATATAATCTCCCCGTACGTGCTCCCCTTATCAATCACGTAC
TACTGCATACTATGGCCAGGAAACCGCAGCACCACGCACGGGCCTGATGACACGCATAGA
TAGGCTACACGTTGCATTGACATTAAGCGAGTGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001345A_C01 KCC001345A_c01
         (755 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB89650.1| hypothetical protein L5808.13 [Leishmania major]       37  0.44
ref|XP_138960.1| similar to mucin 1, transmembrane; peanut-react...    34  2.2
gb|AAP45786.1| adaptor-related protein complex AP3 beta 1 subuni...    33  3.7
gb|AAD53246.1| dioxygenase alpha subunit [Australian soil clone ...    33  6.3
ref|NP_609556.2| CG6583-PA [Drosophila melanogaster] gi|7297932|...    32  8.3

>emb|CAB89650.1| hypothetical protein L5808.13 [Leishmania major]
          Length = 1603

 Score = 36.6 bits (83), Expect = 0.44
 Identities = 24/65 (36%), Positives = 34/65 (51%), Gaps = 12/65 (18%)
 Frame = -2

Query: 175  QGRSPYMPTSIT--------SH*TPLPSNTQAIKTTPTLPTVILQACREATSEASKN--- 29
            +GRS  +P+S          S  +P  S  + +   PTLPTV+  ACRE++  A+K    
Sbjct: 1198 RGRSAPLPSSAAGSPACARKSAVSPASSPERDLFGLPTLPTVVPAACRESSHTAAKTVDG 1257

Query: 28   -PPPP 17
             PPPP
Sbjct: 1258 APPPP 1262

>ref|XP_138960.1| similar to mucin 1, transmembrane; peanut-reactive urinary mucin;
           episialin; polymorphic epithelial mucin; epithelial
           membrane antigen; DF3 antigen; H23 antigen [Homo
           sapiens] [Mus musculus]
          Length = 760

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 481 THAVQEPATLHGSHGAESSMNVAHA*SSLASCTRLVSNILAC 356
           +HAV   + LH SH   S +  +HA SS+  C+  VS++L C
Sbjct: 148 SHAVT--SVLHCSHAVTSVLQCSHAVSSVLQCSHAVSSVLQC 187

 Score = 33.5 bits (75), Expect = 3.7
 Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
 Frame = -2

Query: 481 THAVQEPATLHGSHGAESSMNVAHA*SSLASCTRLVSNILACHGTNASNKVIRNGVRVNS 302
           +HAV   + L  SH   S +  +HA SS+  C+  V+++L C  ++A   V++    V S
Sbjct: 608 SHAVT--SVLQPSHAVTSVLQCSHAVSSVLQCSHAVTSVLQC--SHAVTSVLQPSHAVTS 663

Query: 301 ASIPCALARA----CWHRVQQDMQ 242
             + C+ A A    C H V   +Q
Sbjct: 664 V-LQCSRAVASVLQCSHAVSSVLQ 686

 Score = 32.7 bits (73), Expect = 6.3
 Identities = 26/79 (32%), Positives = 40/79 (49%), Gaps = 4/79 (5%)
 Frame = -2

Query: 481 THAVQEPATLHGSHGAESSMNVAHA*SSLASCTRLVSNILACHGTNASNKVIRNGVRVNS 302
           +HAV   + L  SH   S +  +HA SS+  C+  VS++L C  ++A   V++    V S
Sbjct: 78  SHAVS--SVLQRSHAVTSVLQYSHAVSSVLQCSHAVSSVLQC--SHAVTSVLQCSHAVTS 133

Query: 301 ASIPCALARA----CWHRV 257
             + C+ A A    C H V
Sbjct: 134 V-LQCSHAVASVLQCSHAV 151

 Score = 32.7 bits (73), Expect = 6.3
 Identities = 25/88 (28%), Positives = 43/88 (48%)
 Frame = -2

Query: 481 THAVQEPATLHGSHGAESSMNVAHA*SSLASCTRLVSNILACHGTNASNKVIRNGVRVNS 302
           +HAV   + L  SH   S +  +HA +S+  C+R V+++L C  ++A + V++  + V+S
Sbjct: 638 SHAVT--SVLQCSHAVTSVLQPSHAVTSVLQCSRAVASVLQC--SHAVSSVLQCSLAVSS 693

Query: 301 ASIPCALARACWHRVQQDMQHG*DVYEG 218
                     C H V   +Q    V  G
Sbjct: 694 -------VLQCSHAVTSVLQRSRAVASG 714

 Score = 32.3 bits (72), Expect = 8.3
 Identities = 18/48 (37%), Positives = 26/48 (53%)
 Frame = -2

Query: 481 THAVQEPATLHGSHGAESSMNVAHA*SSLASCTRLVSNILACHGTNAS 338
           +HAV   + L  SH   S +  +HA SS+  C+  VS++L C    AS
Sbjct: 498 SHAVT--SVLQPSHAVASVLQCSHAVSSVLQCSHAVSSVLQCSHAVAS 543

>gb|AAP45786.1| adaptor-related protein complex AP3 beta 1 subunit [Canis
           familiaris]
          Length = 1091

 Score = 33.5 bits (75), Expect = 3.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 531 IPLPRLFCFPVVSMSM---LHGLQCCVDDAVIAYNLPVRAPLINHVLLHTMA 677
           +  P +   P +S S+   L GL      +VI+ N PV  P+  HVLLH M+
Sbjct: 824 VSTPVVLPTPALSPSLIADLEGLNLSTSSSVISVNTPVFVPVKTHVLLHRMS 875

>gb|AAD53246.1| dioxygenase alpha subunit [Australian soil clone B22]
          Length = 165

 Score = 32.7 bits (73), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (53%)
 Frame = +1

Query: 190 PHLFARAWVCLRTRLSRVACPVARGANKLVPGRTECW 300
           PH+F   W+C    L +V+  + +G     PG+TE W
Sbjct: 104 PHVFPNMWICQHNGLGQVSMRMPKG-----PGKTEIW 135

>ref|NP_609556.2| CG6583-PA [Drosophila melanogaster] gi|7297932|gb|AAF53177.1|
           CG6583-PA [Drosophila melanogaster]
          Length = 154

 Score = 32.3 bits (72), Expect = 8.3
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
 Frame = -1

Query: 530 IGCPYRYQHCRQVVCHHTCSAGARNAPWQSRCRIIDERCTCVKQSRILHEI--GVEHIGV 357
           I C     H     C      G R   W  R R +  RC  V  + ++     GV   GV
Sbjct: 53  IECNSDESHMPGSFCMKVVQQGPRGFIWDGRWRQVIRRCASVSDTGVVGVCNWGVYENGV 112

Query: 356 PWDECF 339
            W+EC+
Sbjct: 113 YWEECY 118



EST assemble image


clone accession position
1 MX233h09_r BP091111 1 384
2 CM092h12_r AV392701 59 567
3 CM039f10_r AV388979 90 663
4 LC047a09_r AV622020 244 752
5 MX230c08_r BP090866 458 854




Chlamydomonas reinhardtii
Kazusa DNA Research Institute