KCC001343A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001343A_C01 KCC001343A_c01
gcacgaGAGAACATGTGGGGGGAGCACATGCATCACGGCTACTATCCCAAGGGTGCCCCC
GTCAAGAGCAACCAGCAGGCACAGATCGATATGATTGAGGAGACGCTCAAGGTGGCTGGT
GTGACACAAGCCAAGAAGATGGTGGACGTGGGCTGCGGCATCGGCGGCAGCTCGCGCTAC
ATCAGCCGCAAGTTCGGCTGCACCTCCAACGGCATCACGCTCAGCCCCAAGCAGGCTGCT
CGCGCCAATGCGCTGAGCAAGGAGCAGGGCTTTGGCGACAAGCTGCAGTTCCAGGTGGGC
GACGCGCTGGCGCAGCCGTTCGAGGCCGGCGCCTTCGACCTGGTGTGGTCCATGGAGAGC
GGCGAGCACATGCCCGACAAGAAGAAGTTTGTGTCGGAGCTGGCGCGCGTGTGTGCGCCC
GGCGGCACCGTGATTGTGGTGACGTGGTGCCACCGCGTGTTGGGTCCGGGCGAGGCGGGC
TTGCGCGAGGACGAGAAGGCGCTGCTGGACCGCATCAACGAGGCCTACTACCTGCCCGAC
TGGTGCTCCGTGGCAGACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001343A_C01 KCC001343A_c01
         (559 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO13806.1| gamma-tocopherol methyltransferase [Brassica oler...   233  2e-60
sp|Q9ZSK1|GTOM_ARATH Tocopherol O-methyltransferase, chloroplast...   228  3e-59
ref|NP_176677.1| gamma-tocopherol methyltransferase [Arabidopsis...   228  3e-59
gb|AAL36933.1|AF213481_1 gamma-tocopherol methyltransferase [Per...   228  3e-59
gb|AAM64696.1| gamma-tocopherol methyltransferase [Arabidopsis t...   227  9e-59

>gb|AAO13806.1| gamma-tocopherol methyltransferase [Brassica oleracea]
          Length = 347

 Score =  233 bits (593), Expect = 2e-60
 Identities = 116/192 (60%), Positives = 139/192 (71%), Gaps = 8/192 (4%)
 Frame = +1

Query: 7   ENMWGEHMHHGYYPKGAPVK----SNQQAQIDMIEETLKVAGVTQA----KKMVDVGCGI 162
           E +WG+HMHHG+Y   + V+     +++AQI MIEE+L+ AGVT+     K++VDVGCGI
Sbjct: 77  EEIWGDHMHHGFYDPDSSVQLSDSGHREAQIRMIEESLRFAGVTEEEKKIKRVVDVGCGI 136

Query: 163 GGSSRYISRKFGCTSNGITLSPKQAARANALSKEQGFGDKLQFQVGDALAQPFEAGAFDL 342
           GGSSRYI+ KFG    GITLSP QA RAN L+  Q    K+ FQV DAL QPFE G FDL
Sbjct: 137 GGSSRYIASKFGAECIGITLSPVQAKRANDLAAAQSLSHKVSFQVADALDQPFEDGIFDL 196

Query: 343 VWSMESGEHMPDKKKFVSELARVCAPGGTVIVVTWCHRVLGPGEAGLREDEKALLDRINE 522
           VWSMESGEHMPDK KFV EL RV APGG +I+VTWCHR L  GE  L+  E+ LLDRI +
Sbjct: 197 VWSMESGEHMPDKAKFVKELVRVTAPGGRIIIVTWCHRNLSQGEESLQPWEQNLLDRICK 256

Query: 523 AYYLPDWCSVAD 558
            +YLP WCS +D
Sbjct: 257 TFYLPAWCSTSD 268

>sp|Q9ZSK1|GTOM_ARATH Tocopherol O-methyltransferase, chloroplast precursor
           (Gamma-tocopherol methyltransferase)
           gi|4106538|gb|AAD02882.1| gamma-tocopherol
           methyltransferase [Arabidopsis thaliana]
          Length = 348

 Score =  228 bits (582), Expect = 3e-59
 Identities = 114/194 (58%), Positives = 137/194 (69%), Gaps = 10/194 (5%)
 Frame = +1

Query: 7   ENMWGEHMHHGYYPKGAPVK----SNQQAQIDMIEETLKVAGVT------QAKKMVDVGC 156
           E +WG+HMHHG+Y   + V+     +++AQI MIEE+L+ AGVT      + KK+VDVGC
Sbjct: 76  EEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGC 135

Query: 157 GIGGSSRYISRKFGCTSNGITLSPKQAARANALSKEQGFGDKLQFQVGDALAQPFEAGAF 336
           GIGGSSRY++ KFG    GITLSP QA RAN L+  Q    K  FQV DAL QPFE G F
Sbjct: 136 GIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLSHKASFQVADALDQPFEDGKF 195

Query: 337 DLVWSMESGEHMPDKKKFVSELARVCAPGGTVIVVTWCHRVLGPGEAGLREDEKALLDRI 516
           DLVWSMESGEHMPDK KFV EL RV APGG +I+VTWCHR L  GE  L+  E+ +LD+I
Sbjct: 196 DLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEEALQPWEQNILDKI 255

Query: 517 NEAYYLPDWCSVAD 558
            + +YLP WCS  D
Sbjct: 256 CKTFYLPAWCSTDD 269

>ref|NP_176677.1| gamma-tocopherol methyltransferase [Arabidopsis thaliana]
           gi|25404508|pir||C96673 gamma-tocopherol
           methyltransferase [imported] - Arabidopsis thaliana
           gi|8099780|gb|AAD38271.2|AC006193_27 gamma-tocopherol
           methyltransferase [Arabidopsis thaliana]
           gi|15146234|gb|AAK83600.1| At1g64970/F13O11_27
           [Arabidopsis thaliana] gi|19699150|gb|AAL90941.1|
           At1g64970/F13O11_27 [Arabidopsis thaliana]
          Length = 348

 Score =  228 bits (582), Expect = 3e-59
 Identities = 114/194 (58%), Positives = 137/194 (69%), Gaps = 10/194 (5%)
 Frame = +1

Query: 7   ENMWGEHMHHGYYPKGAPVK----SNQQAQIDMIEETLKVAGVT------QAKKMVDVGC 156
           E +WG+HMHHG+Y   + V+     +++AQI MIEE+L+ AGVT      + KK+VDVGC
Sbjct: 76  EEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGC 135

Query: 157 GIGGSSRYISRKFGCTSNGITLSPKQAARANALSKEQGFGDKLQFQVGDALAQPFEAGAF 336
           GIGGSSRY++ KFG    GITLSP QA RAN L+  Q    K  FQV DAL QPFE G F
Sbjct: 136 GIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKF 195

Query: 337 DLVWSMESGEHMPDKKKFVSELARVCAPGGTVIVVTWCHRVLGPGEAGLREDEKALLDRI 516
           DLVWSMESGEHMPDK KFV EL RV APGG +I+VTWCHR L  GE  L+  E+ +LD+I
Sbjct: 196 DLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEEALQPWEQNILDKI 255

Query: 517 NEAYYLPDWCSVAD 558
            + +YLP WCS  D
Sbjct: 256 CKTFYLPAWCSTDD 269

>gb|AAL36933.1|AF213481_1 gamma-tocopherol methyltransferase [Perilla frutescens]
          Length = 369

 Score =  228 bits (582), Expect = 3e-59
 Identities = 116/194 (59%), Positives = 139/194 (70%), Gaps = 10/194 (5%)
 Frame = +1

Query: 7   ENMWGEHMHHGYYPKGAPVK--SNQQAQIDMIEETLKVAGVT------QAKKMVDVGCGI 162
           EN+WG+HMHHG+Y   A V    ++ AQI MIEE+L+ A  +      + K +VDVGCGI
Sbjct: 96  ENIWGDHMHHGFYEPAADVSISDHRAAQIRMIEESLRFASFSPITTTEKPKNIVDVGCGI 155

Query: 163 GGSSRYISRKFGCT-SNGITLS-PKQAARANALSKEQGFGDKLQFQVGDALAQPFEAGAF 336
           GGSSRY++RK+G   S  ITLS P QA RA  L+  QG   K+ F+V DAL QPF  G F
Sbjct: 156 GGSSRYLARKYGAKLSRAITLSSPVQAQRAQQLADAQGLNGKVSFEVADALNQPFPEGKF 215

Query: 337 DLVWSMESGEHMPDKKKFVSELARVCAPGGTVIVVTWCHRVLGPGEAGLREDEKALLDRI 516
           DLVWSMESGEHMPDKKKFV+EL RV APGG +I+VTWCHR L P E  LR++EK LL++I
Sbjct: 216 DLVWSMESGEHMPDKKKFVNELVRVAAPGGRIIIVTWCHRDLSPSEESLRQEEKDLLNKI 275

Query: 517 NEAYYLPDWCSVAD 558
             AYYLP WCS AD
Sbjct: 276 CSAYYLPAWCSTAD 289

>gb|AAM64696.1| gamma-tocopherol methyltransferase [Arabidopsis thaliana]
          Length = 348

 Score =  227 bits (578), Expect = 9e-59
 Identities = 113/194 (58%), Positives = 137/194 (70%), Gaps = 10/194 (5%)
 Frame = +1

Query: 7   ENMWGEHMHHGYYPKGAPVK----SNQQAQIDMIEETLKVAGVT------QAKKMVDVGC 156
           E +WG+HMHHG+Y   + V+     +++AQI MIEE+L+ AGVT      + KK+VDVGC
Sbjct: 76  EEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGC 135

Query: 157 GIGGSSRYISRKFGCTSNGITLSPKQAARANALSKEQGFGDKLQFQVGDALAQPFEAGAF 336
           GIGGSSRY++ KFG    GITLSP QA RAN L+  Q    K  FQV DAL +PFE G F
Sbjct: 136 GIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLSHKASFQVADALDKPFEDGKF 195

Query: 337 DLVWSMESGEHMPDKKKFVSELARVCAPGGTVIVVTWCHRVLGPGEAGLREDEKALLDRI 516
           DLVWSMESGEHMPDK KFV EL RV APGG +I+VTWCHR L  GE  L+  E+ +LD+I
Sbjct: 196 DLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEEALQPWEQNILDKI 255

Query: 517 NEAYYLPDWCSVAD 558
            + +YLP WCS  D
Sbjct: 256 CKTFYLPAWCSTDD 269



EST assemble image


clone accession position
1 CM039e08_r AV388992 1 559
2 MX203d02_r BP089231 6 360




Chlamydomonas reinhardtii
Kazusa DNA Research Institute