KCC001337A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001337A_C01 KCC001337A_c01
cgcaggtcattcaagggtagatctttgagctgtcgagccggaaggtggaggcacgcagcg
cgttacaaggaggcttctttGTGGCGAAGAGATTGAGATGCTCAACAAACATTCACGTCT
ACTTAGTCTGTATGCATGCGTAGAAGTTCTTGTTTGACGGGCGGTTTTTGTGAGGCGCTG
GTCACCCGTTCTGACACCTTGGTCGACCGTTGTTGGCTGTGGTGGACAACTCGGTGTGCA
CCGGGTGCTGCTATGTGCTCCACGGACACGTACTCGCGCGCGTTCGCCATTGACTGCGCG
ACATAGAGTTCTACGGCATTGGCACTTGGGCTTACAATGTCACTGGCATCACGTGTCAAT
AAAATGAATAATGGCAGGCACCTGTTGCAGCACTGTTGGCGCGATTGCAACGCGTGCGAA
AGGCAATGCCTGCAACAACAAGCAGTGCTGTGAGTAGGGAGCGCCACTGAGTCTGTGCAG
GCGTTTGGCTAGATGTGTGTCAGAGCTAACCATGTCGGCCGGTCGCCAAGTCTGGCGACC
CGCTCCAGCTGCTCATTGTTAGGAAGCCACGATAAGAGGCTCGCATGGTCATATAGCGGT
TTCGCGGTTTGAAGCGGCAAGGAAGTGGCGCGGTATGTCCTAATGGAGCGTGAAGTTTCA
CCGCACTGAACGTGAGTACGGCAATGAACGGCGGCTGAGAATGATAACGCTGCCGGAGAA
ATAAAGGTGCACATAACAGCACCGCCGCAAAAAGATACGGGGCTGGCGGCCGTGTGCTGG
CGTTCTCCCTCCACGCGGCGCTGCATTGGGCGCACATGGAGGGGGAAGCCGCCGGCCACG
CGCCACTCATGTCCTGnGTTCGCTTACTACTGCAATTTTCGCTCATTGATCGAAGGAAGG
TAGGGGTGGCTTGATGGCAATTGCCTGTGCCTTGCCTTTCGGTCTCTGCTACTCTGTCCC
AGGCTCTGGTTTTGTTAGCTTTCCTTAAACCCTGACCTGGCGTATAGCATGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001337A_C01 KCC001337A_c01
         (1013 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S57795 probable deoxyribodipyrimidine photo-lyase (EC 4.1.9...    67  4e-10
dbj|BAA78564.1| amyR [Emericella nidulans] gi|6561865|gb|AAF1710...    36  1.2
ref|NP_726183.1| defective proventriculus CG5799-PC [Drosophila ...    35  2.7
pir||T00117 dve protein - fruit fly (Drosophila melanogaster) gi...    35  2.7
emb|CAA09729.1| Dve protein [Drosophila melanogaster]                  35  2.7

>pir||S57795 probable deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) -
           Chlamydomonas reinhardtii
          Length = 867

 Score = 67.4 bits (163), Expect = 4e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 48  EARSALQGGFFVAKRLRCSTNIHVYLVCMHA 140
           EARSALQGGFFVAKRLRCSTNIHVYLVCMHA
Sbjct: 837 EARSALQGGFFVAKRLRCSTNIHVYLVCMHA 867

>dbj|BAA78564.1| amyR [Emericella nidulans] gi|6561865|gb|AAF17101.1|AF208225_1
           amylase cluster transcriptional regulator AmyR
           [Emericella nidulans]
          Length = 662

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 31/104 (29%), Positives = 41/104 (38%), Gaps = 16/104 (15%)
 Frame = -2

Query: 916 HQATPTFLRSMSENCSSKRTQDMSGAWPAA-------SPSMCAQCSAAW---------RE 785
           HQ  P  L S S +  +  T D+SG WPAA       S       S AW         + 
Sbjct: 562 HQINPPLLNSASSSSIASETLDISGPWPAADDNTMDSSTGSRTTNSCAWEITSGDTNDQN 621

Query: 784 NASTRPPAPYLFAAVLLCAPLFLRQRYHSQPPFIAVLTFSAVKL 653
             S +PP+    ++V L        R HS     A L+F A +L
Sbjct: 622 QTSDQPPSLSGSSSVPLSV-----SRMHSSTSMAAELSFQAGRL 660

>ref|NP_726183.1| defective proventriculus CG5799-PC [Drosophila melanogaster]
           gi|21626548|gb|AAM68215.1| CG5799-PC [Drosophila
           melanogaster]
          Length = 1039

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 720 NKGAHNSTAAKRYGAG--GRVLAFSLHAALHWAHMEGEAAGHAP 845
           N+ AH++ A +  G G  G +L   +HA++H  H  G   GH P
Sbjct: 522 NEAAHHAGAGQAPGPGHHGSMLVHPMHASMHHHHHHGGGGGHGP 565

>pir||T00117 dve protein - fruit fly (Drosophila melanogaster)
           gi|3523073|dbj|BAA32660.1| Dve [Drosophila melanogaster]
          Length = 1019

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 720 NKGAHNSTAAKRYGAG--GRVLAFSLHAALHWAHMEGEAAGHAP 845
           N+ AH++ A +  G G  G +L   +HA++H  H  G   GH P
Sbjct: 502 NEAAHHAGAGQAPGPGHHGSMLVHPMHASMHHHHHHGGGGGHGP 545

>emb|CAA09729.1| Dve protein [Drosophila melanogaster]
          Length = 1021

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 720 NKGAHNSTAAKRYGAG--GRVLAFSLHAALHWAHMEGEAAGHAP 845
           N+ AH++ A +  G G  G +L   +HA++H  H  G   GH P
Sbjct: 504 NEAAHHAGAGQAPGPGHHGSMLVHPMHASMHHHHHHGGGGGHGP 547



EST assemble image


clone accession position
1 CM087d08_r AV392450 1 528
2 LC002g02_r AV619023 324 797
3 CM039a05_r AV388958 416 734
4 HCL043c11_r AV641974 472 1013




Chlamydomonas reinhardtii
Kazusa DNA Research Institute