Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001334A_C01 KCC001334A_c01
(176 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO32617.1| CR027 protein [Chlamydomonas reinhardtii] 51 6e-06
ref|NP_199117.1| CHP-rich zinc finger protein, putative [Arabido... 31 4.9
>gb|AAO32617.1| CR027 protein [Chlamydomonas reinhardtii]
Length = 297
Score = 50.8 bits (120), Expect = 6e-06
Identities = 24/26 (92%), Positives = 25/26 (95%)
Frame = +2
Query: 98 MASFSLRFKASPSAGMSAVGPVHPRK 175
MAS SLRFKASPSAGMSAVGPVHPR+
Sbjct: 1 MASSSLRFKASPSAGMSAVGPVHPRR 26
>ref|NP_199117.1| CHP-rich zinc finger protein, putative [Arabidopsis thaliana]
gi|9757829|dbj|BAB08266.1| CHP-rich zinc finger
protein-like [Arabidopsis thaliana]
Length = 564
Score = 31.2 bits (69), Expect = 4.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 110 RKTPFCCFSCFWSLYGFGYVISSQEDDG 27
RK PF CF C GF YV S+ DG
Sbjct: 329 RKGPFICFVCNQRCSGFAYVEDSERRDG 356
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.312 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,430,220
Number of Sequences: 1537769
Number of extensions: 3255437
Number of successful extensions: 6853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6850
length of database: 498,525,298
effective HSP length: 34
effective length of database: 446,241,152
effective search space used: 10709787648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
