KCC001333A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001333A_C01 KCC001333A_c01
cgacGGCACACGTTTACTCAAATGTGGGCAACTCTGCAATTGTTATGCGTGCATGAACTG
TTATCTGTTGTGTTGTGTGTGCGTGCGTGTGTTGTGTGGGACCTGAGCGGTCTCCTGCGT
GTATGATGGCAGTGTGCAGTCCGTAGCTGTGCATGCGTGTATGTCTTCAAAATGCACTGT
GTGTTTCTCAATTTCTTGCGGACTACGGACACAGAATTGCGGCTTTGTGGAGGCGGGTTA
CACGTGAATTTGCGGCTTTGTCTTCTTGCGTGCTTCGGGGCGTGGCGTGGCGATAATCGC
AACCCGGTGGCACGCAAGTGTGTGCCCACGCCTTTTTGGCCTGCTTGATCCCTGCTGATC
CTTGGGTGAAATCTTGGGGCAGCGGAGTCATGAGCCGTGCATGGGCGGTTTGGTTTTGAC
GGAACAGCACTCCACGCTTGGGACACACTAATCCTCTGCTCTTTGCCGGAATCAAGGCGG
AGAGCAAAGGGAGGGCGTGTGCTGCTCAAACCGTCACTCCCTAGGGCTGGAGGTGCGGCG
GGAGTCGGGGCGGCTTGCTTGCCTGCGTTGCTCTGGGCGTTTTGCCGCTGTGTCCGCGCG
TGTGTGCCTCGCATTAGCCACTGCTGCCGCGCACTGACAAAACAGAGGATAGCTTTGACC
TCAAGTGCATAAATGTTGGCGGATGTTTACGGATGATGGGTGATTGGTGCTTGCTGGTTG
GGGAGGTGGGCAATGGGCAGGGCGCCTGCGTGGGCGCCAGCGGCTCTGGGGGAATGTGGC
CGGTCGTGGAGGCTGAGTGCGAAATGACGCCTTCCCTCTGCTTTTGGGAGCGGCCTTGCT
GCTATGACCGGGGTGTGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001333A_C01 KCC001333A_c01
         (889 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00025308.1| COG1012: NAD-dependent aldehyde dehydrogenase...    37  0.001
ref|XP_286444.1| hypothetical protein XP_286444 [Mus musculus]         44  0.004
ref|NP_787118.1| hypothetical protein MGC35308 [Homo sapiens] gi...    42  0.014
ref|NP_079362.1| hypothetical protein FLJ22596 [Homo sapiens] gi...    42  0.014
emb|CAB98161.1| hypothetical protein L1375.07 [Leishmania major]       42  0.014

>ref|ZP_00025308.1| COG1012: NAD-dependent aldehyde dehydrogenases [Ralstonia
           metallidurans]
          Length = 626

 Score = 37.0 bits (84), Expect(2) = 0.001
 Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
 Frame = -2

Query: 885 HAHAHAHAHTHPGHSSKAAPKSRGKASFRT-----QPPRPATFPQSRWRPRRRPAH---- 733
           H   H H     GH   AA + R   S        QP RPA    S     R  A     
Sbjct: 68  HGGGHLHGARPCGHGRAAAGRVRAAGSHAARPVPGQPLRPALLASSATGDARMKAQEIAA 127

Query: 732 ------CPPP-QPASTNHPSSVNIRQHLCT*GQSYPLFCQCAAAVANARHTRADTA 586
                  PPP  PA    P  + +R  +   G+ +     C AA+ANAR  RA  A
Sbjct: 128 CWQAMDLPPPWTPAEGAAPGVLAVRSPID--GEVFGQLAMCDAALANARIARAHAA 181

 Score = 27.7 bits (60), Expect(2) = 0.001
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 502 AHALPLLSALIPAKSRGLVCPKRGVLFRQNQTAHARLMT 386
           AHA     AL PA +RG V  + G   R N+ A  RL++
Sbjct: 178 AHAAQTTWALTPAPARGEVVRRFGEALRANKDALGRLVS 216

>ref|XP_286444.1| hypothetical protein XP_286444 [Mus musculus]
          Length = 95

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 24/54 (44%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
 Frame = -3

Query: 887 HTHTHTHTHTHTPVIAARPLPKAEGRRHFALSLHDRP-HSPRAAGAHAGALPIA 729
           HTHTHTHTHTH+PV A       +      +  HD P HS     AH   LP A
Sbjct: 23  HTHTHTHTHTHSPVSAIIAFQSPKSSPLCKMRSHDLPAHSSPLNPAHFYMLPAA 76

>ref|NP_787118.1| hypothetical protein MGC35308 [Homo sapiens]
           gi|21961551|gb|AAH34775.1| Hypothetical protein MGC35308
           [Homo sapiens]
          Length = 295

 Score = 42.0 bits (97), Expect = 0.014
 Identities = 22/52 (42%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
 Frame = -2

Query: 852 PGHSSKAAPKSRGKASFRTQPPRP-ATFPQSRWRPRRRPAHCPPPQPASTNH 700
           P  + K  P  RG    RTQPP P    PQ+     R PA C PP+PA + H
Sbjct: 49  PSATLKRPPARRGPGLDRTQPPAPPGVSPQALPSRARAPATCAPPRPAGSGH 100

>ref|NP_079362.1| hypothetical protein FLJ22596 [Homo sapiens]
           gi|10439043|dbj|BAB15412.1| unnamed protein product
           [Homo sapiens]
          Length = 160

 Score = 42.0 bits (97), Expect = 0.014
 Identities = 17/24 (70%), Positives = 18/24 (74%)
 Frame = +1

Query: 817 SAFGSGLAAMTGVCVCVCVCVCVC 888
           S  G GL  + GVCVCVCVCVCVC
Sbjct: 23  SPLGPGLDWVCGVCVCVCVCVCVC 46

>emb|CAB98161.1| hypothetical protein L1375.07 [Leishmania major]
          Length = 1092

 Score = 42.0 bits (97), Expect = 0.014
 Identities = 43/171 (25%), Positives = 62/171 (36%), Gaps = 8/171 (4%)
 Frame = -3

Query: 803 FALSLHDRPHSPRAAGAHAGALPIAHLPNQQAPITHHP--------*TSANIYALEVKAI 648
           FA S   RP     AG  +G+ P  H+P+  +P  H P         +S    +  V  +
Sbjct: 85  FASSPEVRPSFSTRAGGPSGSNPAPHMPSVSSPHGHRPHDGGVSSASSSGQPVSSSVDRL 144

Query: 647 LCFVSARQQWLMRGTHARTQRQNAQSNAGKQAAPTPAAPPALGSDGLSSTRPPFALRLDS 468
                  Q    R +HA   R+     + +   PTPA   A          P   +RL  
Sbjct: 145 AALYQQFQMSQRRDSHA--PRRGTAGRSREAVIPTPARQEA----------PAAPVRLSR 192

Query: 467 GKEQRISVSQAWSAVPSKPNRPCTAHDSAAPRFHPRISRDQAGQKGVGTHL 315
              +  +   + +    KPNR      S+AP   PR     A  KG G H+
Sbjct: 193 QTSRGAASGDSGATDKEKPNRIAPGGGSSAPARVPR-----AASKGGGAHV 238



EST assemble image


clone accession position
1 CM038f08_r AV389053 1 379
2 LCL008f06_r AV626408 5 493
3 HC010g05_r AV632642 227 707
4 LC042h04_r AV621938 315 889
5 HC092b07_r AV638891 328 739




Chlamydomonas reinhardtii
Kazusa DNA Research Institute