KCC001328A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001328A_C01 KCC001328A_c01
agcaCTAAGACAACGTATCAACCGCCGGAACCGCAACGCCTTCACTAAACAGACACGACC
TCCTGCCGTTTCACAGAAGCAGAATGTCGACTTCCGGTCTGCTTTTTCAGCGCCGCAGCG
TGACGGCTGCTACCTACAAGCGCTCATCTAATCGCCAGACTCGGCTCAACGTGGTGGCCT
TTGGCGGCCAGCAGGGGGCAGCCCCCGAGCATGCCGCCCGCGCTCGGACGACGCCGCAAG
CCTCGATGGCTGCTTCGACCATGCCCGGGCCCCAGGGGGCTGAGCTGGGCAACTGGCTGC
GTCAACTTGACCTGTTCTTCAGCAAGTCGCGCGACACACGGTCGCTGTCTGAGATTAGTG
ACTTCAACATGAGCGATGAGGATCATGATGACGACCACGCCAGCCACATGTATGTATCTC
ACCTGGCCGCTCGTATGGCTATGGAGCCGCTCCCTGGCCGCGAGTAGAACGTGGTCAATC
CAGCAGGATACCACGCGCGGGACCACGTGCTTACGACTGGTGGCGAGCTGAACGCGGCTG
ACCACCAAGGGCACATGTCTTCTTTCGTGGCGGCCCATGCGGGGAGCAGACTCCTGGGAC
GTGGGACCGCCTTGTACCGTATGGCTATCATTTGGCGCTTTGCCGTGCGCTACGTCTCCC
AATTTATGACGTTGAGGATAGGCCGGACCCCCCCTGGAGACAGGGGCAGTAGTCAGTAGG
GGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001328A_C01 KCC001328A_c01
         (724 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD38626.1| hypothetical protein [Homo sapiens]                    36  0.53
ref|XP_316196.1| ENSANGP00000005931 [Anopheles gambiae] gi|30175...    35  0.90
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    35  0.90
ref|ZP_00071800.1| COG0465: ATP-dependent Zn proteases [Trichode...    35  1.2
ref|NP_859505.1| hypothetical protein Chr3_0720 [Leishmania majo...    34  2.0

>emb|CAD38626.1| hypothetical protein [Homo sapiens]
          Length = 217

 Score = 36.2 bits (82), Expect = 0.53
 Identities = 23/52 (44%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
 Frame = +1

Query: 196 GQPPSMPPALGRRRKPR--WLLRPCPGPRGLSW------ATGCVNLTCSSAS 327
           G PPS  PA  R R     W L  CPG R  SW        G V  TCSS S
Sbjct: 35  GAPPSPAPAPARPRPALCIWPLGSCPGRRPASWGRAMSHGAGLVRTTCSSGS 86

>ref|XP_316196.1| ENSANGP00000005931 [Anopheles gambiae] gi|30175949|gb|EAA10839.2|
            ENSANGP00000005931 [Anopheles gambiae str. PEST]
          Length = 2680

 Score = 35.4 bits (80), Expect = 0.90
 Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 273  GARAWSKQPSRLAASSERG-RHARGLPPAGRQRPPR*AESGD*MSACR*QPSRCGAEKAD 97
            GA A +K+P+  AAS++RG +HA     +G  R      +G          S+ GA+K +
Sbjct: 2399 GANAATKEPTGAAASAKRGQKHATPAAKSGNARSSGGRGAGQ---------SKRGAKKNN 2449

Query: 96   RKSTFCFCET 67
            +  T C C+T
Sbjct: 2450 KAQTHCICQT 2459

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 35.4 bits (80), Expect = 0.90
 Identities = 48/170 (28%), Positives = 56/170 (32%), Gaps = 22/170 (12%)
 Frame = -2

Query: 612 RRSHVPGVCSP----------HGPPRKKTCALGGQPRSARHQS*ARGPARGILLD*PRST 463
           RR   P  C P          H PPR + CA       AR    A GP R        ST
Sbjct: 93  RRPRSPPFCFPPPAAAPARRAHRPPRCR-CAPAAPSPPAR----AFGPWRS-------ST 140

Query: 462 RGQGAAP*PYERPGEIHTCGWRGRHHDPHRSC*SH*SQT------ATVCRATC*RTGQVD 301
           R    +P       +  T GWR     P R C +  S T       T CR T   T    
Sbjct: 141 RSSARSP-------QSPTAGWRSFAPTPRRPCTAADSGTRRTAASGTRCRGTPSGTRCSA 193

Query: 300 AASCPAQPPGARAWSKQPSRLAASSERGRHARGLPPAGRQR------PPR 169
            A C A P  AR+    P    ++S     +   P     R      PPR
Sbjct: 194 PAPCAASPASARSPPVSPRTARSASRPSSRSASAPSRASPRTCSCRPPPR 243

>ref|ZP_00071800.1| COG0465: ATP-dependent Zn proteases [Trichodesmium erythraeum
           IMS101]
          Length = 667

 Score = 35.0 bits (79), Expect = 1.2
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 150 NRQTRLNVVAFGGQQGAAPEHAARARTTPQASMAASTM--PGPQGAELGNWLRQLDLFFS 323
           +RQ  +++ A+ G+ G    HA   + TP+ S+ A     PG  GA+L N L +  +  +
Sbjct: 365 DRQVTVDLPAYKGRLGILEVHARNKKLTPEISLEAIARKTPGFSGADLANMLNEAAILTA 424

Query: 324 KSR 332
           + R
Sbjct: 425 RRR 427

>ref|NP_859505.1| hypothetical protein Chr3_0720 [Leishmania major]
           gi|21629369|gb|AAM69046.1|AC125735_76 hypothetical
           protein Chr3_0720 [Leishmania major]
          Length = 1078

 Score = 34.3 bits (77), Expect = 2.0
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = -3

Query: 326 LAEEQVKLTQPVAQLSPLGPGHGRSSHRGLRRRPSAGGMLGGCPLLAAKGHHVEPSLAIR 147
           L E Q  L      +SP GPG G S +  L R  S GG + G  +  A G H +    ++
Sbjct: 741 LGEAQYTLPPATMLMSPRGPGGGASRYHPLHRN-SEGGNVAGSAVTDAPGRHRQQQYWLQ 799

Query: 146 *ALVGSSRHAAALKKQTGS 90
                   H A  ++  G+
Sbjct: 800 GGFALHGDHPAVAQRGGGA 818



EST assemble image


clone accession position
1 LC031h06_r AV621148 1 541
2 LC100c09_r AV625955 3 427
3 LC075c03_r AV624261 5 498
4 MX234f12_r BP091159 8 293
5 LC018a12_r AV620137 11 540
6 MX257c01_r BP092645 22 511
7 MX236f11_r BP091305 135 514
8 CM038d04_r AV389043 406 734
9 MX218b06_r BP090058 414 703




Chlamydomonas reinhardtii
Kazusa DNA Research Institute