KCC001326A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001326A_C01 KCC001326A_c01
AGAAAGAGACTCCATAGACTAAGGCTCGCTTTCTCTTAGCCACTTGCGATCTTCCTTTCT
CCCGCGTACTTGCTTGACCCCTTATACCCGCACGCTCGGACTCGTAACATCTAGATGGCG
GCGAAGGACCTTTTGGAGCACATTGACTTCTCCGGACTGGAGTGCCTGAACGAGGCGCCC
AACCACGGCGTCGCCAACGTGCTCAAGCAAGGCTACCGGGAACAAGACGAGCTCTATTTG
GAGAGCGACACCGACGAGCAGCTCCTCCTCAACATCCGCTTTCAGCAGCGTGTCCGCGTC
AGCGCCCTCGTCATCAAGGCCATTGACGAGGCCAAGGCGCCCAAGACCATCAAGCTCTAC
GTCAACAGGCCGCACATGGGCTTCTCCGACACGGGCTCTGTGCCGTGCGCCCAGGAGCTG
GTGCTGTCGGGCGCCCAGGCCGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001326A_C01 KCC001326A_c01
         (445 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG51403.1|AC009465_3 unknown protein, 3' partial; 91932-9323...    96  9e-20
ref|NP_566238.1| expressed protein [Arabidopsis thaliana] gi|166...    96  9e-20
gb|AAF04904.1|AC011437_19 unknown protein [Arabidopsis thaliana]       96  9e-20
gb|AAH45322.1| Similar to thioredoxin-like, 32kDa [Danio rerio]        72  2e-12
ref|NP_004777.1| thioredoxin-like, 32kDa; thioredoxin-related 32...    69  2e-11

>gb|AAG51403.1|AC009465_3 unknown protein, 3' partial; 91932-93234 [Arabidopsis thaliana]
          Length = 135

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 46/93 (49%), Positives = 65/93 (69%)
 Frame = +1

Query: 127 DLLEHIDFSGLECLNEAPNHGVANVLKQGYREQDELYLESDTDEQLLLNIRFQQRVRVSA 306
           DLL+ ID+SG+ECLN++ +H + N LKQGYRE + L LESD DEQLL+ I F Q +++ +
Sbjct: 15  DLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHS 74

Query: 307 LVIKAIDEAKAPKTIKLYVNRPHMGFSDTGSVP 405
             IK  +E + PKT+K + N+ HM FS+    P
Sbjct: 75  FAIKGPEE-EGPKTVKFFSNKEHMCFSNVNDFP 106

>ref|NP_566238.1| expressed protein [Arabidopsis thaliana] gi|16648681|gb|AAL25533.1|
           AT3g04780/F7O18_27 [Arabidopsis thaliana]
           gi|20147247|gb|AAM10337.1| AT3g04780/F7O18_27
           [Arabidopsis thaliana] gi|21593799|gb|AAM65766.1|
           unknown [Arabidopsis thaliana]
          Length = 176

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 46/93 (49%), Positives = 65/93 (69%)
 Frame = +1

Query: 127 DLLEHIDFSGLECLNEAPNHGVANVLKQGYREQDELYLESDTDEQLLLNIRFQQRVRVSA 306
           DLL+ ID+SG+ECLN++ +H + N LKQGYRE + L LESD DEQLL+ I F Q +++ +
Sbjct: 15  DLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHS 74

Query: 307 LVIKAIDEAKAPKTIKLYVNRPHMGFSDTGSVP 405
             IK  +E + PKT+K + N+ HM FS+    P
Sbjct: 75  FAIKGPEE-EGPKTVKFFSNKEHMCFSNVNDFP 106

>gb|AAF04904.1|AC011437_19 unknown protein [Arabidopsis thaliana]
          Length = 161

 Score = 96.3 bits (238), Expect = 9e-20
 Identities = 46/93 (49%), Positives = 65/93 (69%)
 Frame = +1

Query: 127 DLLEHIDFSGLECLNEAPNHGVANVLKQGYREQDELYLESDTDEQLLLNIRFQQRVRVSA 306
           DLL+ ID+SG+ECLN++ +H + N LKQGYRE + L LESD DEQLL+ I F Q +++ +
Sbjct: 15  DLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQVIKLHS 74

Query: 307 LVIKAIDEAKAPKTIKLYVNRPHMGFSDTGSVP 405
             IK  +E + PKT+K + N+ HM FS+    P
Sbjct: 75  FAIKGPEE-EGPKTVKFFSNKEHMCFSNVNDFP 106

>gb|AAH45322.1| Similar to thioredoxin-like, 32kDa [Danio rerio]
          Length = 289

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
 Frame = +1

Query: 127 DLLEHIDFSGLECLNEAPNHGVANVLKQGYREQDELYLESDTDEQLLLNIRFQQRVRVSA 306
           DL+  ++ +G ECLNE+ + G  + L +     D  YLESD DEQLL+ + F Q V++ +
Sbjct: 125 DLMPFVNKAGCECLNESDDCGFDSCLIK-----DATYLESDCDEQLLITMAFNQPVKLFS 179

Query: 307 LVIKAIDEAKAPKTIKLYVNRPH-MGFSDTGSVPCAQELVLS 429
           + + + D A+APK++K+++N P  MGF D       Q L LS
Sbjct: 180 MKLLSADFAQAPKSVKIFINLPRSMGFDDAERSEATQSLDLS 221

>ref|NP_004777.1| thioredoxin-like, 32kDa; thioredoxin-related 32 kDa protein;
           thioredoxin-like, 32kD [Homo sapiens]
           gi|18202039|sp|O43396|TXNL_HUMAN Thioredoxin-like
           protein (32 kDa thioredoxin-related protein)
           gi|7513372|pir||JC5938 thioredoxin-like protein - human
           gi|2897942|gb|AAC39599.1| thioredoxin-like protein [Homo
           sapiens] gi|2961254|gb|AAC05830.1| thioredoxin homolog
           [Homo sapiens] gi|2970689|gb|AAC39898.1|
           thioredoxin-related protein [Homo sapiens]
           gi|7672937|gb|AAF66676.1| thioredoxin-like protein [Homo
           sapiens] gi|12654637|gb|AAH01156.1| Thioredoxin-like,
           32kDa [Homo sapiens]
          Length = 289

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = +1

Query: 127 DLLEHIDFSGLECLNEAPNHGVANVLKQGYREQDELYLESDTDEQLLLNIRFQQRVRVSA 306
           DL+  I+ +G ECLNE+  HG  N L++     D  +LESD DEQLL+ + F Q V++ +
Sbjct: 125 DLMPFINKAGCECLNESDEHGFDNCLRK-----DTTFLESDCDEQLLITVAFNQPVKLYS 179

Query: 307 LVIKAIDEAKAPKTIKLYVNRPH-MGFSDTGSVPCAQELVLS 429
           +  +  D  + PK +K+++N P  M F +       Q L L+
Sbjct: 180 MKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELT 221



EST assemble image


clone accession position
1 LC080d06_r AV624626 1 537
2 MX025h10_r BP087121 5 476
3 LCL046h09_r AV628778 76 468
4 HC039e02_r AV634904 92 550
5 CM038c08_r AV389049 124 429




Chlamydomonas reinhardtii
Kazusa DNA Research Institute