Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001323A_C01 KCC001323A_c01
(347 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00059112.1| COG4987: ABC-type transport system involved i... 33 0.79
gb|AAB81991.2| polyprotein precursor [Foot-and-mouth disease vir... 32 1.8
ref|NP_822869.1| putative WhiB-family transcriptional regulator ... 32 3.0
ref|ZP_00121799.1| COG0395: ABC-type sugar transport system, per... 31 3.9
ref|NP_696791.1| permease of ABC transporter for sugars [Bifidob... 31 3.9
>ref|ZP_00059112.1| COG4987: ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Thermobifida fusca]
Length = 982
Score = 33.5 bits (75), Expect = 0.79
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 334 GGKDRAPTWRWVMSPRVHLPVQRP 263
GG+DRAP WR SP ++LP +P
Sbjct: 374 GGRDRAPCWRSDRSPTMNLPAPKP 397
>gb|AAB81991.2| polyprotein precursor [Foot-and-mouth disease virus O]
Length = 2320
Score = 32.3 bits (72), Expect = 1.8
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = -2
Query: 310 WRWVMSPRVHLPVQRPERLYVKLLAS-SCVASFDVRVFDGVIVA-----TGHLMACELLD 149
WRWV + R L +P +KLL+ SC+A+ R D V+VA TG E+LD
Sbjct: 996 WRWVKAIRTGLDEAKPWYKLIKLLSRLSCMAAVAARSKDPVLVAIMLGDTG----LEILD 1051
Query: 148 CPHTSMRIR*SFSRTPLVAA 89
+I S S VAA
Sbjct: 1052 STFVVKKISDSLSSLFHVAA 1071
>ref|NP_822869.1| putative WhiB-family transcriptional regulator [Streptomyces
avermitilis MA-4680] gi|29605337|dbj|BAC69404.1|
putative WhiB-family transcriptional regulator
[Streptomyces avermitilis MA-4680]
Length = 81
Score = 31.6 bits (70), Expect = 3.0
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = -1
Query: 317 PDLALGDESACAFTG-----PETGASLRETARI-QLCSV 219
PD+A +E+ CA TG PE G+S+RE RI LC +
Sbjct: 9 PDIAWQEEALCAQTGADFFFPEPGSSVREAKRICGLCEI 47
>ref|ZP_00121799.1| COG0395: ABC-type sugar transport system, permease component
[Bifidobacterium longum DJO10A]
Length = 316
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 331 GKDRAPTWRWVMSPRVHLPVQRPERLYVKLLASSCVASFDVRVFDGVIVATGHLMACELL 152
G R WRWV++ ++ V V ++A A F+ F G A G +MAC L+
Sbjct: 100 GWTRGNFWRWVLNSLIYSGVSALIGTIVSVMAGYATAKFN---FRGKNAAIGIIMACMLM 156
>ref|NP_696791.1| permease of ABC transporter for sugars [Bifidobacterium longum
NCC2705] gi|23326929|gb|AAN25427.1|AE014798_4 permease
of ABC transporter for sugars [Bifidobacterium longum
NCC2705]
Length = 316
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 331 GKDRAPTWRWVMSPRVHLPVQRPERLYVKLLASSCVASFDVRVFDGVIVATGHLMACELL 152
G R WRWV++ ++ V V ++A A F+ F G A G +MAC L+
Sbjct: 100 GWTRGNFWRWVLNSLIYSGVSALIGTIVSVMAGYATAKFN---FRGKNAAIGIIMACMLM 156
