KCC001322A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001322A_C01 KCC001322A_c01
cacagcCACAAAGCCCCACGCCTACATAGCTACTTCATTAGTTCCTTTGACAAGTCGACA
GTGTTAGTGTGTTCTGCAAGTATGTCCGACGCTCTGAAGAATGCCTTCATCGCCTTTGCC
TCCTACGGCAAGGGGCAAATGATGAAGCAAGACATGGATAACAAGAATTTTTCGAAATGC
ATCAAGGACTCTGGCATCCTGGACAAGGTCATCACTTCGACTGAGGTGGACATCACTTTC
ATGAAGGTCAAGGCCAAGACTGACCGCACCATCAACTTCGCCCAGTTCTGCACGGCGCTG
GAGCACTTCGCGGCCAAGCGGGGCGTGTCGGTGGACAGCCTGCACGCCAAGGTGGAGGCG
GCCTCGCCCACCTCCAACGCCACGCAGGCGGAGGCGGTCAAGTTCCATGATGACAAGAAC
CTGTACACGGGCGTGTATAAGAACGGCGGCCCCACCAACATCGACAAGCAGGCGGCGGGC
GGCCTGGCTGGGCACCTGGACAGGAGCCCGGCGGACGTGCGCGGTGTTAAGTTCTGAAGC
GGCAGTCCTGAGCAGGGTGTGCTGCTGGGATCAGGCGTGGACGGTGGCCGCCGGATACAG
ACCGGCACTGTGGTAGGAGCTGAGGTCGTAGGGCACGGGCATTGTGCTGACCTAGGTTCA
AATAGCCGTGGCGGCAGGTGTGCTGTGAATGGTACATGTTGTGTGTTCGTGTGTTCGGGC
TAGAGTCCCTCCTGTACATGCATGTGTATTACCTTGGACCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001322A_C01 KCC001322A_c01
         (762 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL79509.1| Igr3p [Tetrahymena thermophila]                        129  4e-29
gb|EAA17578.1| Tetrahymena thermophila Igr3p [Plasmodium yoelii ...    99  6e-20
ref|NP_701716.1| hypothetical protein [Plasmodium falciparum 3D7...    90  3e-17
ref|NP_776245.1| chromosome 14 open reading frame 8; p25 beta [H...    84  2e-15
ref|XP_341747.1| similar to 25 kDa brain-specific protein (p25-a...    74  3e-12

>gb|AAL79509.1| Igr3p [Tetrahymena thermophila]
          Length = 149

 Score =  129 bits (325), Expect = 4e-29
 Identities = 69/133 (51%), Positives = 91/133 (67%), Gaps = 4/133 (3%)
 Frame = +1

Query: 145 KQDMDNKNFSKCIKDSGILDKVITSTEVDITFMKVKAKTD-RTINFAQFCTALEHFAAKR 321
           K DMD K F+K  KD G+LDK +T+T++D+ F KVK  +  RTI FAQF   L+  A K+
Sbjct: 16  KADMDGKTFAKFAKDCGLLDKKLTATDIDLIFAKVKTSSAVRTITFAQFEKGLDQMATKK 75

Query: 322 GVSVDSLHAKVEAAS-PTSNATQAEAVKFHDDKNLYTGVYKNGGPTNID--KQAAGGLAG 492
           G+S+D+L  KV +A  PT   T+A+AVKFHDDK+LYTGVY NGGP+ +D        ++ 
Sbjct: 76  GISLDALKEKVTSAGGPTFTGTKADAVKFHDDKSLYTGVYANGGPSTVDIGNGKISDISQ 135

Query: 493 HLDRSPADVRGVK 531
             DR+ ADVRGVK
Sbjct: 136 LCDRTGADVRGVK 148

>gb|EAA17578.1| Tetrahymena thermophila Igr3p [Plasmodium yoelii yoelii]
          Length = 141

 Score = 99.4 bits (246), Expect = 6e-20
 Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 5/131 (3%)
 Frame = +1

Query: 151 DMDNKNFSKCIKDSGILDKVITSTEVDITFMKVKAKTDRTINFAQFCTALEHFAAKRGVS 330
           DMD++ F K +KDS +L+K IT+ + DITF +VK +  + I + QF  A+++   K  + 
Sbjct: 3   DMDSRTFVKILKDSKLLNKKITAVDADITFARVKTQGSKRIKYDQFVEAIKYITEKNKLD 62

Query: 331 VDSLHAKV--EAAS-PTSNATQAEAVKFHDDKNLYTGVYKNGGPTNIDKQAA--GGLAGH 495
            D    ++  EA++ P    T+AEA +FHDDK+ YTGV+K GGPT IDK       ++  
Sbjct: 63  YDQFVEQLCNEASNGPILYGTKAEATRFHDDKSTYTGVHKLGGPTTIDKNKTHFSNISEI 122

Query: 496 LDRSPADVRGV 528
            DRS  ++RGV
Sbjct: 123 TDRSECNIRGV 133

>ref|NP_701716.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23496888|gb|AAN36440.1|AE014850_5 hypothetical
           protein PFL1770c [Plasmodium falciparum 3D7]
          Length = 152

 Score = 90.1 bits (222), Expect = 3e-17
 Identities = 52/132 (39%), Positives = 78/132 (58%), Gaps = 5/132 (3%)
 Frame = +1

Query: 151 DMDNKNFSKCIKDSGILDKVITSTEVDITFMKVKAKTDRTINFAQFCTALEHFAAKRGVS 330
           DMD++ F K +KD+ +L+K  T+ + D+ F KVK+K  + IN+ QF  A++    K  ++
Sbjct: 14  DMDSRTFVKILKDAKLLNKKFTTVDADLIFAKVKSKGAKRINYDQFLEAVKCIVEKNKLN 73

Query: 331 VDS-LHAKVEAAS--PTSNATQAEAVKFHDDKNLYTGVYKNGGPTNIDKQAA--GGLAGH 495
            D  +    + AS  P    T+ E V+F DDK+ +TGV+K GGP+ IDK       L+  
Sbjct: 74  YDKFVETLCQEASKGPILYGTKTENVRFFDDKSTFTGVHKQGGPSIIDKNKTQFSDLSEI 133

Query: 496 LDRSPADVRGVK 531
            DRS  D+RGVK
Sbjct: 134 TDRSEYDIRGVK 145

>ref|NP_776245.1| chromosome 14 open reading frame 8; p25 beta [Homo sapiens]
           gi|28380098|sp|P59282|P25B_HUMAN Protein p25-beta
           gi|24658704|gb|AAH38970.1| Chromosome 14 open reading
           frame 8 [Homo sapiens] gi|27461094|gb|AAL62338.1| p25
           beta [Homo sapiens]
          Length = 170

 Score = 84.0 bits (206), Expect = 2e-15
 Identities = 55/131 (41%), Positives = 75/131 (56%), Gaps = 11/131 (8%)
 Frame = +1

Query: 82  MSDALKNAFIAFASYGKGQMMKQDMDNKNFSKCIKDSGILD-KVITSTEVDITFMKVKAK 258
           M+   +  F  FA++G+      +M+NKNFSK  KD GI+D K +TST+VDI F KVKAK
Sbjct: 1   MASEAEKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAK 60

Query: 259 TDRTINFAQFCTALEHFAAKR--GVSVD----SLHAKVEAASP-TSNATQAEAVKFHD-- 411
             RTI F QF  A++    KR  G S D    +++  +E   P T+ AT+A  V   D  
Sbjct: 61  NARTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRL 120

Query: 412 -DKNLYTGVYK 441
            D + YTG +K
Sbjct: 121 TDTSKYTGTHK 131

>ref|XP_341747.1| similar to 25 kDa brain-specific protein (p25-alpha) [Rattus
           norvegicus]
          Length = 284

 Score = 73.6 bits (179), Expect = 3e-12
 Identities = 53/149 (35%), Positives = 76/149 (50%), Gaps = 12/149 (8%)
 Frame = +1

Query: 91  ALKNAFIAFASYGKGQMMKQDMDNKNFSKCIKDSGILD-KVITSTEVDITFMKVKAKTDR 267
           AL+ AF  FA +G  +   ++M  KN+SK  KD  ++D K +T T+VDI F K+K K+ R
Sbjct: 115 ALEEAFRRFAVHGDTRATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCR 174

Query: 268 TINFAQFCTALEHFAAKR------GVSVDSLHAKVEAASP----TSNATQAEAVKFHDDK 417
           TI F QF  ALE  A KR        +V  +H  +E  +P     + A  +  V    D 
Sbjct: 175 TITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDT 234

Query: 418 NLYTGVYKNGGPTNIDKQAAG-GLAGHLD 501
           + +TG +K       D+   G G AG +D
Sbjct: 235 SKFTGSHKE----RFDQSGKGKGKAGRVD 259



EST assemble image


clone accession position
1 MX054g05_r BP088229 1 342
2 HC049c04_r AV635662 7 519
3 HC047b05_r AV635502 21 542
4 MXL027f08_r BP094699 33 144
5 CM037h04_r AV388887 202 762




Chlamydomonas reinhardtii
Kazusa DNA Research Institute