KCC001321A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001321A_C01 KCC001321A_c01
AGAAGCCGTCTCATAGCGCAGCGGCAACCATGCTGTCCACGCGTGACTCGCCAGGCCCTC
GCGGCCAAGCCTTTTGGCACCGTGCAGCCCCGTGTTGCTCCCCGGCCTTTCCAAGTGCCA
GATGGCGCGCAAGGATAGCTACATGGCTTGAGGTTGAGGTGGCTGAGGATGAGCCCGAGG
ATGTGGCTGTGCGCCGCTACATGAAGCTGGTCATGCAGAGCCGTGTGGTGGAGAAGCTCC
GCGCTCGCCGCACCAAGGAGACTAAGATTGAGGAGTACAAGCGCCGCTTCCGTGAGCGCG
TTGAGATGCGCAAGGCGGGCATTGTGGACCCCACCTATGACGAGCTCTACTCGGCGGAGC
TGGACCCCAAGCCCTTTGAGGACTTCTTCCAGCTGCGTGACGACGAGGACCCCGAGGGCG
CCTACGATGGCGCGGGCGCTGGCTCGGACGACATCTTCGGCAGCTTTGCCGGCGGCACCT
ACACGGACACCACTCGGTGGGGCTCGGGCTACCCCGGTGGCGGCTACATGAACACCTCCA
ACAGCTTCGGTGCTCAGGGTGGCTACATGGGCGGCTACATGCAGTAAACGGCTCAGCGAC
CGCTCGGTGTGGATGGCTGTAATTTGTGGTGGTCGCGCTCGGCCCTGCCGGCGAGCTCGC
TGTGACGGCGAGCTGCGTCAGCTATCAGCTGGATTGCTTTTGGAGCAATTCAGTAGGGCT
CGCGGCTGCTTGGCGGATTTGGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001321A_C01 KCC001321A_c01
         (744 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00051523.1| hypothetical protein [Magnetospirillum magnet...    53  6e-06
ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyc...    52  8e-06
pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    52  8e-06
prf||2119210A mucin                                                    51  2e-05
pir||I53641 mucin 5AC - human (fragment) gi|945219|gb|AAC41774.1...    50  4e-05

>ref|ZP_00051523.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 425

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 41/122 (33%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
 Frame = -1

Query: 603 AVAEPFTACSRPCSHPEHRSCWRCSCSRHRGSPSPTEWCPCRCRRQS-CR------RCRP 445
           A   P   C  PCS P    C+  +CS   G P     C    RR S C+      RCR 
Sbjct: 2   AARTPPATC--PCSIPAAACCFPPTCSSSAGFPLSMAVCSAGSRRSSGCKEWARRGRCRA 59

Query: 444 SQRPRHRRRPRGPRRHA----AGRSPQRAWGPAPPSRARHRWGPQCPPCASQRAHGSGAC 277
           + RPR   RPR P              R W PA  SR      P+C P  SQR       
Sbjct: 60  TARPRSPSRPRSPISRVIFPPCATKRARRWPPASRSR------PRCRPSRSQRRTNGPCS 113

Query: 276 TP 271
           TP
Sbjct: 114 TP 115

>ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680] gi|29605870|dbj|BAC69934.1| putative
           protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680]
          Length = 474

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = +1

Query: 172 SPRMWLCAAT*SWSCRAVWWRSSALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSST 351
           +P  W CA     + R    RSSA   P     R+T+        CARR  W PP  S  
Sbjct: 359 TPTCWCCARRSGGTARR---RSSAGTTPASWTSRATT--------CARRPAW-PPRRSPA 406

Query: 352 RRSWTPSPLRTSSSCVT-------TRTPRAPTMARALARTTSSAALPAAPTRTP 492
                P+  R++ S  T       T +P  P    A  RTT+SA+ PA+P RTP
Sbjct: 407 ASPAGPTACRSTPSATTRAWPASATTSPSCPASPSAARRTTASASRPASPARTP 460

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 56/195 (28%), Positives = 71/195 (35%), Gaps = 27/195 (13%)
 Frame = -1

Query: 654 SPAGPSATTTNYSHPHRAVAEPFTACSRPCSHPEHRSCWRCSCSRH-RGSPSPTEWCPCR 478
           SPA    T T +S P      P  +C  P  HP  R  W  S +R  R SPSPT      
Sbjct: 269 SPAVVCCTPTPWSSP--CPPRPPPSCCAP-RHPPPRPSWPASSTRPWRWSPSPTAAVGPA 325

Query: 477 CRRQSCRRCRPS--QRPRHRRRP---------RGP--------------RRHAAGRSPQR 373
             + +   C PS     RHRR P         R P              RR +AG +P  
Sbjct: 326 SPKAAASSCLPSTGAPSRHRRSPPRSGAGSRTRTPTCWCCARRSGGTARRRSSAGTTPAS 385

Query: 372 AWGPAPPSRARHRWGPQCPPCASQRAHGSGACTPQS*S-PWCGERGASPPHGSA*PASCS 196
               A     R  W P+  P AS     +   TP + +  W      SP    + PAS S
Sbjct: 386 WTSRATTCARRPAWPPRRSPAASPAGPTACRSTPSATTRAWPASATTSP----SCPASPS 441

Query: 195 GAQPHPRAHPQPPQP 151
            A+    +  +P  P
Sbjct: 442 AARRTTASASRPASP 456

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
 Frame = +1

Query: 193 AAT*SWSCRAVWWRSSALAA----PRRLRLRSTSAASVSALRCARRALWTPPMTSST-RR 357
           AAT +   RA    + A AA    P      +T+A + +A   AR A    P T++T   
Sbjct: 290 AATAATPARAATPATPATAATPATPATAATAATAATAATAATPARAARAATPATAATPAT 349

Query: 358 SWTPSPLRTSSSCVTTRTP----RAPTMARALARTTSSAALPAAPTRTPLGGARATPVAA 525
           + T +   T+++  T  TP    RA T A A    T++ A  AA   TP   ARA   A 
Sbjct: 350 AATAATAATAATAATAATPARAARAATPATAATAATAATAATAATAATPARAARAATPAT 409

Query: 526 T*TPPTASVLRVATWAATCSKRLSDRSVWMAVICGGRARPCRRAR 660
             TP T +    A  AAT +   +  +   A        P R AR
Sbjct: 410 PATPATPATPATAATAATAATAATAATAATAATAATAPTPARAAR 454

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 34/114 (29%), Positives = 49/114 (42%)
 Frame = +1

Query: 238 SALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRTPR 417
           S  ++PR  + +   A   +A R A  A    P T++T  +   +    +++   T    
Sbjct: 11  SCTSSPRYEQHQLLVARPAAAARAATPATAATPATAATPATAATAATEATAATAATPATA 70

Query: 418 APTMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAAT 579
           A     A A TT++ A  AA   TP   ARA   A   TP TA+    A  AAT
Sbjct: 71  ATPATAATAATTAATAATAATAATPARAARAATPATAATPATAATAATAATAAT 124

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 38/112 (33%), Positives = 49/112 (42%), Gaps = 1/112 (0%)
 Frame = +1

Query: 247 AAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRTPR-AP 423
           A P      +T+A S +A   AR A    P T++T     P+   T++      TP  A 
Sbjct: 144 ATPATAATAATAATSATAATAARAAT---PATAAT-----PATPATAARAARAATPATAA 195

Query: 424 TMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAAT 579
           T A A    T++ A  AA   TP   ARA   A   TP TA+    A  AAT
Sbjct: 196 TAATAATAATAATAATAATAATPARAARAATPATAPTPATAATPATAATAAT 247

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 31/104 (29%), Positives = 45/104 (42%)
 Frame = +1

Query: 274 STSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRTPRAPTMARALARTT 453
           +T+A   +A   A  A    P T++T  +   +    +++    R  RA T A A    T
Sbjct: 53  ATAATEATAATAATPATAATPATAATAATTAATAATAATAATPARAARAATPATAATPAT 112

Query: 454 SSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAATCS 585
           ++ A  AA   T    ARA   A   TP TA+    A  AAT +
Sbjct: 113 AATAATAATAATAETPARAATPATAATPATAATPATAATAATAA 156

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 52/157 (33%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
 Frame = +1

Query: 193 AAT*SWSCRAVWWRSSALAA-PRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTP 369
           AAT +   RA    + A AA P      +T+A + +A   AR A  TP   ++   + TP
Sbjct: 89  AATAATPARAARAATPATAATPATAATAATAATAATAETPARAA--TPATAATPATAATP 146

Query: 370 SPLRTSSSCVTTRTPRAPTMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTAS 549
           +   T+++  T+ T  A T ARA   T ++AA PA    TP   ARA   A   TP TA+
Sbjct: 147 ATAATAATAATSAT--AATAARAA--TPATAATPA----TPATAARAARAA---TPATAA 195

Query: 550 VLRVATWAATCSKRLSDRSVWMAVICGGRARPCRRAR 660
               A  AAT +          A      A P R AR
Sbjct: 196 TAATAATAATAA---------TAATAATAATPARAAR 223

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 37/108 (34%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
 Frame = +1

Query: 274 STSAASVSALRCARRALWTPPMTSSTR----RSWTPSPLRTSSSCVTTRTPRAPTMARAL 441
           +TSA + +A R A  A    P T +T     R+ TP+   T+++  T  T      A A 
Sbjct: 156 ATSATAATAARAATPATAATPATPATAARAARAATPATAATAATAATAATAATAATA-AT 214

Query: 442 ARTTSSAALPAAPTRTPLGGARATPVAAT*--TPPTASVLRVATWAAT 579
           A T + AA  A P   P     ATP  A    T PTA+    A  AAT
Sbjct: 215 AATPARAARAATPATAPTPATAATPATAATAATAPTAATPARAARAAT 262

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 41/142 (28%), Positives = 54/142 (37%), Gaps = 4/142 (2%)
 Frame = +1

Query: 247 AAPRRLRLRSTSAASVSALRCARRALWTPPMTSST----RRSWTPSPLRTSSSCVTTRTP 414
           A P R    +T A + +    A  A    P T++T      + TP+   T ++  T  TP
Sbjct: 252 ATPARAARAATPATAATLATAATPATPATPATAATDATAATAATPARAATPATPATAATP 311

Query: 415 RAPTMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAATCSKRL 594
             P  A      T++ A  AA   TP   ARA   A   TP TA+    A  AAT +   
Sbjct: 312 ATPATA-----ATAATAATAATAATPARAARAATPATAATPATAATAATAATAATAATA- 365

Query: 595 SDRSVWMAVICGGRARPCRRAR 660
                         A P R AR
Sbjct: 366 --------------ATPARAAR 373

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 36/118 (30%), Positives = 49/118 (41%)
 Frame = +1

Query: 232 RSSALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRT 411
           R++  A P      +T+A + +A   A     TP   +      TP+   T ++  T  T
Sbjct: 370 RAARAATPATAATAATAATAATAATAA-----TPARAARAATPATPATPATPATPATAAT 424

Query: 412 PRAPTMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAATCS 585
             A T A A    T++ A  AA   TP   ARA   A   TP TA     A  AAT +
Sbjct: 425 --AATAATAATAATAATAATAATAPTPARAARAATPATGATPATAPTAGTAATAATAA 480

 Score = 41.6 bits (96), Expect = 0.013
 Identities = 43/131 (32%), Positives = 58/131 (43%)
 Frame = +1

Query: 193 AAT*SWSCRAVWWRSSALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPS 372
           AAT + + RA    ++A AA       +T+A + +  R AR A    P T +T    TP+
Sbjct: 365 AATPARAARAATPATAATAATAATA--ATAATAATPARAARAATPATPATPATPA--TPA 420

Query: 373 PLRTSSSCVTTRTPRAPTMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASV 552
              T+++  T  T  A T A A    T+     AA   TP  GA  TP  A    PTA  
Sbjct: 421 TAATAATAATAAT--AATAATAATAATAPTPARAARAATPATGA--TPATA----PTAGT 472

Query: 553 LRVATWAATCS 585
              A  AAT +
Sbjct: 473 AATAATAATAA 483

 Score = 41.2 bits (95), Expect = 0.017
 Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
 Frame = +1

Query: 274 STSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRTPR----------AP 423
           +T A   +A R AR A  TP   ++   + T +   T+++  T  TP           AP
Sbjct: 174 ATPATPATAARAARAA--TPATAATAATAATAATAATAATAATAATPARAARAATPATAP 231

Query: 424 TMARALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAAT 579
           T A A    T++ A  A    TP   ARA       TP TA+ L  A   AT
Sbjct: 232 TPATAATPATAATAATAPTAATPARAARAA------TPATAATLATAATPAT 277

 Score = 40.4 bits (93), Expect = 0.029
 Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
 Frame = +1

Query: 232 RSSALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRT 411
           R++  A P      +T+A + +A   A  A    P  ++  R+ TP+   T ++  T  T
Sbjct: 184 RAARAATPATAATAATAATAATAATAATAATAATPARAA--RAATPATAPTPATAATPAT 241

Query: 412 PR----APTMAR----------ALARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTAS 549
                 APT A           A A T ++AA PA P  TP   A     A   TP  A+
Sbjct: 242 AATAATAPTAATPARAARAATPATAATLATAATPATPA-TPATAATDATAATAATPARAA 300

Query: 550 VLRVATWAATCSKRLSDRSVWMAVICGGRARPCRRAR 660
                  AAT +   +  +   A      A P R AR
Sbjct: 301 TPATPATAATPATPATAATAATAATAATAATPARAAR 337

 Score = 35.4 bits (80), Expect = 0.95
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = +1

Query: 193 AAT*SWSCRAVWWRSSALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPS 372
           AAT +   RA   R++  A P      +T A + +A   A  A      T++T  +  P+
Sbjct: 392 AATAATPARAA--RAATPATPATPATPATPATAATAATAATAATAATAATAATAAT-APT 448

Query: 373 PLRTSSSCV--TTRTPR-APTMARALARTTSSAALPAAPTRTPLGGARATPVAA 525
           P R + +    T  TP  APT   A   T ++AA  A P R       ATPV A
Sbjct: 449 PARAARAATPATGATPATAPTAGTAA--TAATAATAATPARASTPATAATPVTA 500

>prf||2119210A mucin
          Length = 164

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 31/107 (28%), Positives = 54/107 (49%), Gaps = 1/107 (0%)
 Frame = +1

Query: 235 SSALAAPRRLRLRSTSAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRTP 414
           +S+++ P      +++ ++ S        + T   TS+   S T +P  +++S  TT TP
Sbjct: 13  TSSISVPTTSTTSASTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSAPTTSTTSAPTTSTP 72

Query: 415 RAPTMARALARTTSSAALP-AAPTRTPLGGARATPVAAT*TPPTASV 552
            APT +  LA TTS+ + P  + T TP     +TP  +T +  T S+
Sbjct: 73  SAPTTSTTLAPTTSTTSAPTTSTTSTPTSSTTSTPQTSTTSASTTSI 119

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 33/118 (27%), Positives = 52/118 (43%)
 Frame = +1

Query: 280 SAASVSALRCARRALWTPPMTSSTRRSWTPSPLRTSSSCVTTRTPRAPTMARALARTTSS 459
           + +S+S    +  +  T   TS    + +P P  +++S  TT T  APT +   A TTS+
Sbjct: 12  TTSSISVPTTSTTSASTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSAPTTSTTSAPTTST 71

Query: 460 AALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAATCSKRLSDRSVWMAVICGG 633
              P+APT +        P  +T + PT S     T + T + + S  S     I  G
Sbjct: 72  ---PSAPTTS----TTLAPTTSTTSAPTTSTTSTPTSSTTSTPQTSTTSASTTSITSG 122

 Score = 35.8 bits (81), Expect = 0.73
 Identities = 25/73 (34%), Positives = 33/73 (44%), Gaps = 3/73 (4%)
 Frame = +1

Query: 274 STSAASVSALRCARRALWTPPMTSSTRRSWTP---SPLRTSSSCVTTRTPRAPTMARALA 444
           +TSA + S       +  + P TS+T  S T     P  T S   TT T  APT +   A
Sbjct: 87  TTSAPTTSTTSTPTSSTTSTPQTSTTSASTTSITSGPGTTPSPVPTTSTTSAPTTSTTSA 146

Query: 445 RTTSSAALPAAPT 483
            TTS+ + P   T
Sbjct: 147 ATTSTISAPTTST 159

 Score = 32.7 bits (73), Expect = 6.1
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 364 TPSPLRTSSSCVTTRTPRAPTMARALARTTSSAALP-AAPTRTPLGGARATPVAAT*TPP 540
           TPSP+ T+SS         PT +   A TTS+ + P   P+  P     + P  +T + P
Sbjct: 6   TPSPVPTTSSI------SVPTTSTTSASTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSAP 59

Query: 541 TASVLRVAT 567
           T S     T
Sbjct: 60  TTSTTSAPT 68

>pir||I53641 mucin 5AC - human (fragment) gi|945219|gb|AAC41774.1| mucin
          Length = 164

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 34/107 (31%), Positives = 53/107 (48%), Gaps = 4/107 (3%)
 Frame = +1

Query: 274 STSAASVSALRCARRALWTPPMTSSTRR----SWTPSPLRTSSSCVTTRTPRAPTMARAL 441
           ST++AS ++         +P  T+ST      S T +P  +++S  TT TP APT +  L
Sbjct: 22  STTSASTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSAPTTSTTSAPTTSTPSAPTTSTTL 81

Query: 442 ARTTSSAALPAAPTRTPLGGARATPVAAT*TPPTASVLRVATWAATC 582
           A TTS+ + P   T        +TP ++T + P  S    +T + TC
Sbjct: 82  APTTSTTSAPTTST-------TSTPTSSTTSTPQTSTTSASTTSITC 121

 Score = 35.8 bits (81), Expect = 0.73
 Identities = 25/73 (34%), Positives = 33/73 (44%), Gaps = 3/73 (4%)
 Frame = +1

Query: 274 STSAASVSALRCARRALWTPPMTSSTRRSWTP---SPLRTSSSCVTTRTPRAPTMARALA 444
           +TSA + S       +  + P TS+T  S T     P  T S   TT T  APT +   A
Sbjct: 87  TTSAPTTSTTSTPTSSTTSTPQTSTTSASTTSITCGPGTTPSPVPTTSTTSAPTTSTTSA 146

Query: 445 RTTSSAALPAAPT 483
            TTS+ + P   T
Sbjct: 147 ATTSTISAPTTST 159



EST assemble image


clone accession position
1 HC029b02_r AV634089 1 524
2 HC076f11_r AV637724 8 574
3 HC018h02_r AV633276 83 574
4 MX230h05_r BP090910 92 333
5 LC071b10_r AV623969 98 529
6 HC014a11_r AV632896 104 532
7 HC001f10_r AV631917 104 586
8 HC095e01_r AV639140 112 518
9 MX018g12_r BP086860 144 573
10 HC021b12_r AV633471 257 727
11 CM038g04_r AV389048 348 725
12 CM037g07_r AV388903 376 853




Chlamydomonas reinhardtii
Kazusa DNA Research Institute