KCC001319A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001319A_C01 KCC001319A_c01
cctaccttcactttcgctacttGCACAAACATACGTTACCATGGCCGCCCTTCAGAGCCG
TGTTGGTCGGTGCGTGGGCGCTTCCGCTCGGCGCCAGCACTCGCTGGTTGCGAGCCGTGT
TGCTGTGCCGCGCCCTAGCGTCAGCGTTGTGCCTCAGGTGCAGCAGGAGGCTCACCATGT
GCAGGGCGTCGCCCAAATCCCCTCGAGCCGTGCCTCTTGCATTGCTCGGGCCACTTACCA
TGGCTCTGTTATGGCGGAGCCTGGCAGCAAGTACGCGGTGGTGGTCGCTCGCTTCAACAG
CCTGATCACCAAGGGCCTGCTGGAGGGTGCTATGGAGACCTTTGAGGCGCATGGCGTGCC
CAAGGAGAACGTGGACGTCGCTTGGGTGCCGGGCAGCTTCGAGATGCCCGTCATCGCCAA
GTCCATGGCAAAATCGGGAAAGTACGCAGGCGTGGTGTGCATCGGCGCTGTGATTCGTGG
CGCTACCACCCACTACGACGCCGTCGTGAGCGCGGCCACCAGCGGCGTGCTCAACTGCAG
CGTTGACACCGGCGTGCCCGTCGTGTTCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001319A_C01 KCC001319A_c01
         (570 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD44809.1|AF148648_1 6,7-dimethyl-8-ribityllumazine synthase...   137  1e-31
ref|NP_181933.1| 6,7-dimethyl-8-ribityllumazine synthase precurs...   136  2e-31
ref|NP_561485.1| riboflavin synthase beta subunit [Clostridium p...   134  9e-31
emb|CAD41245.1| OSJNBa0067K08.20 [Oryza sativa (japonica cultiva...   126  2e-28
sp|Q9XH32|RISB_SPIOL 6,7-dimethyl-8-ribityllumazine synthase, ch...   124  9e-28

>gb|AAD44809.1|AF148648_1 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana
           tabacum]
          Length = 225

 Score =  137 bits (345), Expect = 1e-31
 Identities = 64/109 (58%), Positives = 87/109 (79%)
 Frame = +2

Query: 242 GSVMAEPGSKYAVVVARFNSLITKGLLEGAMETFEAHGVPKENVDVAWVPGSFEMPVIAK 421
           GSV +  G ++AVVVARFN LITK LLEGA++TF+ + V +E++DV WVPG FE+ V+A+
Sbjct: 74  GSVTSAKGHRFAVVVARFNDLITKKLLEGALDTFKNYSVREEDIDVVWVPGCFEIGVVAQ 133

Query: 422 SMAKSGKYAGVVCIGAVIRGATTHYDAVVSAATSGVLNCSVDTGVPVVF 568
            + KS KY  ++CIGAVIRG T+HYDAVV+AATSGVL+  +++G P +F
Sbjct: 134 QLGKSQKYQAILCIGAVIRGDTSHYDAVVNAATSGVLSAGLNSGTPCIF 182

>ref|NP_181933.1| 6,7-dimethyl-8-ribityllumazine synthase precursor [Arabidopsis
           thaliana] gi|20139375|sp|O80575|RISB_ARATH
           6,7-dimethyl-8-ribityllumazine synthase, chloroplast
           precursor (DMRL synthase) (Lumazine synthase)
           gi|7488301|pir||T00685 riboflavin synthase homolog
           At2g44050 - Arabidopsis thaliana
           gi|3212862|gb|AAC23413.1| 6,7-dimethyl-8-ribityllumazine
           synthase precursor [Arabidopsis thaliana]
           gi|5532610|gb|AAD44810.1|AF148649_1
           6,7-dimethyl-8-ribityllumazine synthase precursor
           [Arabidopsis thaliana] gi|15292959|gb|AAK93590.1|
           putative 6,7-dimethyl-8-ribityllumazine synthase
           precursor [Arabidopsis thaliana]
           gi|20259133|gb|AAM14282.1| putative
           6,7-dimethyl-8-ribityllumazine synthase precursor
           [Arabidopsis thaliana]
          Length = 227

 Score =  136 bits (343), Expect = 2e-31
 Identities = 62/109 (56%), Positives = 90/109 (81%)
 Frame = +2

Query: 242 GSVMAEPGSKYAVVVARFNSLITKGLLEGAMETFEAHGVPKENVDVAWVPGSFEMPVIAK 421
           GS++   G ++A+VVARFN ++TK LLEGA+ETF+ + V +E+++V WVPGSFE+ V+A+
Sbjct: 77  GSLIRGEGLRFAIVVARFNEVVTKLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQ 136

Query: 422 SMAKSGKYAGVVCIGAVIRGATTHYDAVVSAATSGVLNCSVDTGVPVVF 568
           ++ KSGK+  V+CIGAVIRG TTHYDAV ++A SGVL+ S+++GVP +F
Sbjct: 137 NLGKSGKFHAVLCIGAVIRGDTTHYDAVANSAASGVLSASINSGVPCIF 185

>ref|NP_561485.1| riboflavin synthase beta subunit [Clostridium perfringens]
           gi|18144228|dbj|BAB80275.1| riboflavin synthase beta
           subunit [Clostridium perfringens str. 13]
          Length = 153

 Score =  134 bits (337), Expect = 9e-31
 Identities = 59/100 (59%), Positives = 78/100 (78%)
 Frame = +2

Query: 269 KYAVVVARFNSLITKGLLEGAMETFEAHGVPKENVDVAWVPGSFEMPVIAKSMAKSGKYA 448
           K+A+V  RFN  I   L+ GA++ F+ HGV +EN+D+AWVPG+FE+P+IAK +AKSGKYA
Sbjct: 14  KFAIVAGRFNEFIVSKLIGGALDAFKRHGVEEENIDLAWVPGAFEIPLIAKKLAKSGKYA 73

Query: 449 GVVCIGAVIRGATTHYDAVVSAATSGVLNCSVDTGVPVVF 568
           GVVC+G VIRGAT+HYD V    + G+ N S+DT VPV+F
Sbjct: 74  GVVCLGTVIRGATSHYDYVCGEVSKGIANVSLDTEVPVIF 113

>emb|CAD41245.1| OSJNBa0067K08.20 [Oryza sativa (japonica cultivar-group)]
          Length = 221

 Score =  126 bits (316), Expect = 2e-28
 Identities = 59/109 (54%), Positives = 80/109 (73%)
 Frame = +2

Query: 242 GSVMAEPGSKYAVVVARFNSLITKGLLEGAMETFEAHGVPKENVDVAWVPGSFEMPVIAK 421
           GS+    G ++ VVVARFN ++T  LL+GA+ETFE + V KEN+ V  VPGSFE+PV A+
Sbjct: 71  GSLTNTQGLRFGVVVARFNEIVTNLLLQGALETFERYSVKKENITVVSVPGSFEIPVAAQ 130

Query: 422 SMAKSGKYAGVVCIGAVIRGATTHYDAVVSAATSGVLNCSVDTGVPVVF 568
            + KSGK+  ++CIGAVIRG TTHYDAV ++A SGVL+  +   +P +F
Sbjct: 131 KLGKSGKFDAILCIGAVIRGDTTHYDAVANSAASGVLSAGLSAEIPCIF 179

>sp|Q9XH32|RISB_SPIOL 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor
           (DMRL synthase) (Lumazine synthase)
           gi|5532606|gb|AAD44808.1|AF147203_1
           6,7-dimethyl-8-ribityllumazine synthase precursor
           [Spinacia oleracea]
          Length = 222

 Score =  124 bits (311), Expect = 9e-28
 Identities = 61/130 (46%), Positives = 93/130 (70%), Gaps = 3/130 (2%)
 Frame = +2

Query: 188 VAQIPSSRASCI---ARATYHGSVMAEPGSKYAVVVARFNSLITKGLLEGAMETFEAHGV 358
           VA    +RAS +   A     G V      ++A+VVARFN  +T+ L+EGA++TF+ + V
Sbjct: 51  VASNKKNRASFVVTNAVRELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSV 110

Query: 359 PKENVDVAWVPGSFEMPVIAKSMAKSGKYAGVVCIGAVIRGATTHYDAVVSAATSGVLNC 538
             E++DV WVPG++E+ V A+++ KSGKY  +VC+GAV++G T+HYDAVV++A+SGVL+ 
Sbjct: 111 -NEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSA 169

Query: 539 SVDTGVPVVF 568
            +++GVP VF
Sbjct: 170 GLNSGVPCVF 179



EST assemble image


clone accession position
1 HC034d05_r AV634513 1 485
2 HCL044c05_r AV642033 23 337
3 HC035h09_r AV634641 24 432
4 HC045e12_r AV635375 24 534
5 HC027d02_r AV633953 24 537
6 HC021b11_r AV633470 24 514
7 HC005f05_r AV632236 24 570
8 HC011b09_r AV632674 26 526
9 HC083a09_r AV638189 26 459
10 CM037f02_r AV388842 28 567
11 HC089a12_r AV638654 34 498
12 HC009d12_r AV632538 36 513
13 HC033b12_r AV634425 40 565




Chlamydomonas reinhardtii
Kazusa DNA Research Institute