KCC001317A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001317A_C01 KCC001317A_c01
cttGTTGGCCTACTGCAGCCAAGCTTTCCTAGCCTAGTTGCTGTGTTTGTAGCACAACTC
GCAGCAAGATGGACCACTACCGCTCTCTGCTTCAGGAGACCGCGGCGTCCAACCAGGACA
CCGCGCCGTTCTTCGGCTTTATCGGCGCTGCCGCTGCCCTGGTCTTCTCTTGCATGGGCG
CCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTG
AGCTGGTCATGAAGAGCATTGTGCCCGTGGTCATGGCTGGTGTGCTCGGTATCTACGGCC
TGATTATTGCTGTGATCATCTCCACCGGCGTTAACCCCGCCACCTACAAGCTCTACGATG
GCTTTGCTCACCTGGCCTCGGGCCTGGCTTGCGGTCTCGCCGGTCTGGCTGCGGGTATGG
CGATTGGCATCGTTGGCGACGCCGGTGTGCGCGCTAACGCCCAGCAACCCAAGCTGTTCG
TCGGTATGATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGTGG
GTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCGCCGCCCTCTAAG
CAGCGGACAGCATTATGCAAGGCTAAATCGTGCTTCACATGTCGGGGGCGGGGTCTCGGA
ACTTTCGTGTGCTAGGTTCGTCCGCGGGGCGTCACTTGGGAGGCTGGGCCACGGGGGCTA
AGGGTTTAGGCTGTCGGTCGCCAATTGCGGCGGCTAGCGGTAGGTCAGACCAGGGGGGCA
TCGCGAGGTCTGTGGTGCGGTGTGCGTGCGACGGGGTGTACAATAGGGACTAACTGAGAG
CGAAGCGTGCGGGCCACATCACAAGTTATGACTCACATCCGACCAGTGGTGCGTCCCTGG
TTCTTCCAACGCCTGAAAGGCACTGACAGCGTGGTACCCGAGTTTTGTAACGCTTTCTTG
TG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001317A_C01 KCC001317A_c01
         (962 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA75516.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|...   273  4e-72
sp|Q40585|VATL_TOBAC Vacuolar ATP synthase 16 kDa proteolipid su...   273  4e-72
dbj|BAA75515.1| vacuolar H+-ATPase c subunit [Citrus unshiu] gi|...   272  5e-72
gb|AAA82977.1| vacuolar H+-ATPase proteolipid (16 kDa) subunit        272  5e-72
gb|AAL08022.1|AF416606_1 vacuolar H+-ATPase 16 kDa proteolipid s...   272  7e-72

>dbj|BAA75516.1| vacuolar H+-ATPase c subunit [Citrus unshiu]
           gi|6721531|dbj|BAA89596.1| vacuolar H+-ATPase c subunit
           [Citrus unshiu]
          Length = 166

 Score =  273 bits (697), Expect = 4e-72
 Identities = 142/165 (86%), Positives = 153/165 (92%), Gaps = 2/165 (1%)
 Frame = +3

Query: 90  LQETAASNQDTAPFFGFIGAAAALVFSCMGAAYGTAKSGVGIASMGVMRPELVMKSIVPV 269
           +  T  S  +TAPFFGF+GAAAALVFSCMGAAYGTAKSGVG+ASMGVMRPELVMKSIVPV
Sbjct: 1   MSSTLFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPV 60

Query: 270 VMAGVLGIYGLIIAVIISTGVNP--ATYKLYDGFAHLASGLACGLAGLAAGMAIGIVGDA 443
           VMAGVLGIYGLIIAVIISTG+NP   +Y L+DG+AHL+SGLACGLAGL+AGMAIGIVGDA
Sbjct: 61  VMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDA 120

Query: 444 GVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSKAGASAA 578
           GVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSS+AG S A
Sbjct: 121 GVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA 165

>sp|Q40585|VATL_TOBAC Vacuolar ATP synthase 16 kDa proteolipid subunit
           gi|1200118|emb|CAA65062.1| c subunit of V-type ATPase
           [Nicotiana tabacum]
          Length = 165

 Score =  273 bits (697), Expect = 4e-72
 Identities = 142/159 (89%), Positives = 151/159 (94%), Gaps = 2/159 (1%)
 Frame = +3

Query: 108 SNQDTAPFFGFIGAAAALVFSCMGAAYGTAKSGVGIASMGVMRPELVMKSIVPVVMAGVL 287
           S  +TAPFFGF+GAAAALVFSCMGAAYGTAKSGVG+ASMGVMRPELVMKSIVPVVMAGVL
Sbjct: 6   SGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVL 65

Query: 288 GIYGLIIAVIISTGVNPAT--YKLYDGFAHLASGLACGLAGLAAGMAIGIVGDAGVRANA 461
           GIYGLIIAVIISTG+NP T  Y L+DG+AHL+SGLACGLAGL+AGMAIGIVGDAGVRANA
Sbjct: 66  GIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANA 125

Query: 462 QQPKLFVGMILILIFAEALALYGLIVGIILSSKAGASAA 578
           QQPKLFVGMILILIFAEALALYGLIVGIILSS+AG S A
Sbjct: 126 QQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA 164

>dbj|BAA75515.1| vacuolar H+-ATPase c subunit [Citrus unshiu]
           gi|6721527|dbj|BAA89594.1| vacuolar H+-ATPase c subunit
           [Citrus unshiu]
          Length = 165

 Score =  272 bits (696), Expect = 5e-72
 Identities = 142/162 (87%), Positives = 153/162 (93%), Gaps = 2/162 (1%)
 Frame = +3

Query: 99  TAASNQDTAPFFGFIGAAAALVFSCMGAAYGTAKSGVGIASMGVMRPELVMKSIVPVVMA 278
           +A S  +TAPFFGF+GAAAALVFSCMGAAYGTAKSGVG+ASMGVMRPELVMKSIVPVVMA
Sbjct: 3   SAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62

Query: 279 GVLGIYGLIIAVIISTGVNP--ATYKLYDGFAHLASGLACGLAGLAAGMAIGIVGDAGVR 452
           GVLGIYGLIIAVIISTG+NP   +Y L+DG+AHL+SGLACGLAGL+AGMAIGIVGDAGVR
Sbjct: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122

Query: 453 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSKAGASAA 578
           ANAQQPKLFVGMILILIFAEALALYGLIVGIILSS+AG S A
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA 164

>gb|AAA82977.1| vacuolar H+-ATPase proteolipid (16 kDa) subunit
          Length = 165

 Score =  272 bits (696), Expect = 5e-72
 Identities = 142/162 (87%), Positives = 152/162 (93%), Gaps = 2/162 (1%)
 Frame = +3

Query: 99  TAASNQDTAPFFGFIGAAAALVFSCMGAAYGTAKSGVGIASMGVMRPELVMKSIVPVVMA 278
           T  S  +TAPFFGF+GAAAALVFSCMGAAYGTAKSGVG+ASMGVMRPELVMKSIVPVVMA
Sbjct: 3   TTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 62

Query: 279 GVLGIYGLIIAVIISTGVNP--ATYKLYDGFAHLASGLACGLAGLAAGMAIGIVGDAGVR 452
           GVLGIYGLIIAVIISTG+NP   +Y L+DG+AHL+SGLACGLAGL+AGMAIGIVGDAGVR
Sbjct: 63  GVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122

Query: 453 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSKAGASAA 578
           ANAQQPKLFVGMILILIFAEALALYGLIVGIILSS+AG S A
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA 164

>gb|AAL08022.1|AF416606_1 vacuolar H+-ATPase 16 kDa proteolipid subunit c [Pennisetum
           glaucum]
          Length = 165

 Score =  272 bits (695), Expect = 7e-72
 Identities = 142/159 (89%), Positives = 150/159 (94%), Gaps = 2/159 (1%)
 Frame = +3

Query: 108 SNQDTAPFFGFIGAAAALVFSCMGAAYGTAKSGVGIASMGVMRPELVMKSIVPVVMAGVL 287
           S  +TAPFFGF+GAAAALVFSCMGAAYGTAKSGVG+ASMGVMRPELVMKSIVPVVMAGVL
Sbjct: 6   SGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVL 65

Query: 288 GIYGLIIAVIISTGVNPAT--YKLYDGFAHLASGLACGLAGLAAGMAIGIVGDAGVRANA 461
           GIYGLIIAVIISTG+NP    Y L+DG+AHL+SGLACGLAGLAAGMAIGIVGDAGVRANA
Sbjct: 66  GIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANA 125

Query: 462 QQPKLFVGMILILIFAEALALYGLIVGIILSSKAGASAA 578
           QQPKLFVGMILILIFAEALALYGLIVGIILSS+AG S A
Sbjct: 126 QQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA 164



EST assemble image


clone accession position
1 MX033g06_r BP087401 1 445
2 LC036g03_r AV621480 4 527
3 LC064b01_r AV623459 4 523
4 LC010g04_r AV619610 4 528
5 LC072f09_r AV624079 4 504
6 MX024a03_r BP087053 6 433
7 MX022e04_r BP086997 8 396
8 LC039f04_r AV621684 10 456
9 CM037e06_r AV388847 11 565
10 CM078a03_r AV391837 12 490
11 MXL018e11_r BP094131 13 554
12 MX221h04_r BP090309 13 426
13 LC089c01_r AV625202 16 438
14 CM079c04_r AV391991 388 969
15 LC079e05_r AV624569 561 1046




Chlamydomonas reinhardtii
Kazusa DNA Research Institute