KCC001311A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001311A_C01 KCC001311A_c01
ctgcaccttagttgcttgtaaacagCCAGACCGCGCCTGCATACGCTGCCCCCACTGAAG
GATGCCCGTCTTCTCCCGCTACTACAACACCGGCCTGCTGTGCGGCGTGGCTGTTGCTAG
CGGCATTTCTATTTGGTGGTATAACCGTGAGAGCATCTACGTGCGCGTGAAGTCCGACCT
CGAGAAGGAGGGCAAGACCGCTGCTAAGCACTAAATTGCCCTAGATTAAGAACAAGATGC
CAAAGCGAAAGCAGGAGAACGCCGGCCCCGCCCCTCGGCCTCAGCGGACGCCCGCAAAGG
CTCCGCAAGCTGGCGATGCAGCAGGAGACACAGCGCTGACAGCGTCCGATAAGCCCAACC
GCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAGCTCTGCAAGTGCATTCCTAAGGGAA
AGGTCAGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001311A_C01 KCC001311A_c01
         (430 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva...    39  0.017
emb|CAD21241.1| hypothetical protein [Neurospora crassa]               37  0.048
ref|XP_327966.1| predicted protein [Neurospora crassa] gi|289180...    37  0.048
gb|AAC47557.1| insect intestinal mucin IIM22 [Trichoplusia ni]         37  0.082
pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    36  0.11

>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
          Length = 508

 Score = 38.9 bits (89), Expect = 0.017
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = +3

Query: 24  SQTAPAYAAPTEGCPSSPATTTPACCAAWLLLAAFLFGGITVRASTCA*SPTSR--RRAR 197
           S   PA  AP++  P +PAT   A                   +S+   +P +   R  +
Sbjct: 49  SSATPAARAPSQRTPPTPATPAKAASPP------------ATNSSSSPRTPAAPAPRPPQ 96

Query: 198 PLLSTKLP*IKNKMPKRKQENAGPAPRPQRTPAKAPQAGDAAGDTALTASDKPNRPPTA 374
           P  +T     K   P   +  + PAP P  TP+  P    ++   A T + KP+ PP++
Sbjct: 97  PPPATSPAPTKPSSPPAPKPPSPPAPSPSTTPSSPPAPKPSSPPPAATPTTKPSPPPSS 155

>emb|CAD21241.1| hypothetical protein [Neurospora crassa]
          Length = 697

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 21/58 (36%), Positives = 29/58 (49%)
 Frame = +3

Query: 150 RASTCA*SPTSRRRARPLLSTKLP*IKNKMPKRKQENAGPAPRPQRTPAKAPQAGDAA 323
           +A T A +P  R   +P   T +P    + PK++Q    P P P  TP K+P  G AA
Sbjct: 360 QAQTEAPTPAPRSPPQPAAPTPIP--VRETPKQEQRPPAPEPAPTPTPVKSPPRGPAA 415

>ref|XP_327966.1| predicted protein [Neurospora crassa] gi|28918058|gb|EAA27740.1|
           predicted protein [Neurospora crassa]
          Length = 763

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 21/58 (36%), Positives = 29/58 (49%)
 Frame = +3

Query: 150 RASTCA*SPTSRRRARPLLSTKLP*IKNKMPKRKQENAGPAPRPQRTPAKAPQAGDAA 323
           +A T A +P  R   +P   T +P    + PK++Q    P P P  TP K+P  G AA
Sbjct: 426 QAQTEAPTPAPRSPPQPAAPTPIP--VRETPKQEQRPPAPEPAPTPTPVKSPPRGPAA 481

>gb|AAC47557.1| insect intestinal mucin IIM22 [Trichoplusia ni]
          Length = 807

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
 Frame = +3

Query: 30  TAPAYAAPTEGCPSSPATTT--PACCAAWLLLAAFLFGGITVRASTCA*SPTSRRRARPL 203
           TA   AAPT   P SP T T  P          A     ITV ++  A +PT+   A P 
Sbjct: 539 TAAPTAAPTTAAPESPTTVTVPPTAAPTAAPTTAVPEIPITVTSAPTA-APTAAPTAAPT 597

Query: 204 LS-----TKLP*IKNKMPKRKQENAGPAPRPQRT--PAKAPQAGDAAGDTALTASDKPNR 362
            +      ++P      P      A PAP    T  P  AP     A +T +TA      
Sbjct: 598 AAPTTAVPEIPTTVTSPPTAAPTTAAPAPNTTVTVPPTAAPTTAAPAPNTTVTA------ 651

Query: 363 PPTA 374
           PPTA
Sbjct: 652 PPTA 655

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 34/114 (29%), Positives = 39/114 (33%), Gaps = 1/114 (0%)
 Frame = +3

Query: 33  APAYAAPTEGCPSSPAT-TTPACCAAWLLLAAFLFGGITVRASTCA*SPTSRRRARPLLS 209
           A A  A T   P++PAT  TPA  A     A          A+T A +PT  R AR    
Sbjct: 399 ARAARAATPATPATPATPATPATAATAATAATAATAATAATAATAATAPTPARAAR---- 454

Query: 210 TKLP*IKNKMPKRKQENAGPAPRPQRTPAKAPQAGDAAGDTALTASDKPNRPPT 371
                                P    TPA AP AG AA       +  P R  T
Sbjct: 455 ------------------AATPATGATPATAPTAGTAATAATAATAATPARAST 490



EST assemble image


clone accession position
1 CM036h08_r AV388830 1 197
2 MX049e06_r BP088017 26 430




Chlamydomonas reinhardtii
Kazusa DNA Research Institute