Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001305A_C01 KCC001305A_c01
(328 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T21503 hypothetical protein F28D9.1 - Caenorhabditis elegans 34 0.62
pir||H87917 protein F28D9.1 [imported] - Caenorhabditis elegans 34 0.62
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ... 34 0.62
dbj|BAA97382.1| contains similarity to Ta11-like non-LTR retroel... 33 1.1
ref|NP_637055.1| MFS transporter [Xanthomonas campestris pv. cam... 33 1.4
>pir||T21503 hypothetical protein F28D9.1 - Caenorhabditis elegans
Length = 335
Score = 33.9 bits (76), Expect = 0.62
Identities = 21/46 (45%), Positives = 24/46 (51%)
Frame = +1
Query: 190 PRRTSGTSAGNA*SPAPQTGPPRQCSPLR*TRKPQPG*RRRCGSVP 327
P G SAGN P+ G PR+ SP R TR+ P RR GS P
Sbjct: 201 PAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPP---RRRGSPP 243
>pir||H87917 protein F28D9.1 [imported] - Caenorhabditis elegans
Length = 279
Score = 33.9 bits (76), Expect = 0.62
Identities = 21/46 (45%), Positives = 24/46 (51%)
Frame = +1
Query: 190 PRRTSGTSAGNA*SPAPQTGPPRQCSPLR*TRKPQPG*RRRCGSVP 327
P G SAGN P+ G PR+ SP R TR+ P RR GS P
Sbjct: 201 PAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPP---RRRGSPP 243
>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 33.9 bits (76), Expect = 0.62
Identities = 21/46 (45%), Positives = 24/46 (51%)
Frame = +1
Query: 190 PRRTSGTSAGNA*SPAPQTGPPRQCSPLR*TRKPQPG*RRRCGSVP 327
P G SAGN P+ G PR+ SP R TR+ P RR GS P
Sbjct: 201 PAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPP---RRRGSPP 243
>dbj|BAA97382.1| contains similarity to Ta11-like non-LTR retroelement
protein~gene_id:MWD22.14 [Arabidopsis thaliana]
Length = 267
Score = 33.1 bits (74), Expect = 1.1
Identities = 20/68 (29%), Positives = 28/68 (40%)
Frame = +1
Query: 67 HSAWHSPLPLQIPCPFARARNQSLRQTTNANLPSRMASHCLPRRTSGTSAGNA*SPAPQT 246
H H P + +P P R Q + + T A L + C S + + PAP T
Sbjct: 82 HQRNHCPYMVPLPAPRNDGRGQDMAERTRAALHEEL---CRSDMNSQSQLSDDSFPAPIT 138
Query: 247 GPPRQCSP 270
PPR +P
Sbjct: 139 PPPRTATP 146
>ref|NP_637055.1| MFS transporter [Xanthomonas campestris pv. campestris str. ATCC
33913] gi|21112775|gb|AAM40979.1| MFS transporter
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 468
Score = 32.7 bits (73), Expect = 1.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 206 PLVRRGRQWLAMRDGRFALVVWRSDWLRARAKGQGIWSGSGECQAECRGAWPRMRA 39
PL G +W+ + G FAL +W WLR+R W + AE ++ A
Sbjct: 192 PLGVSGWRWVVLLSGVFALAIW---WLRSRLPESARWLAAQGRHAEAEAVMAQLEA 244
