KCC001296A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001296A_C01 KCC001296A_c01
CTTTTACACGTCATTCATCATACCGGCTCGGCAACGAGCTTGGTCTTCGGTATCTGGCAT
AAACTGAAAGCGTTCGCGCGCCAGCACTTCTTGCCTTTGACGAACCACTTCATATTAGCT
TGACGGCACGCCTACAATGGCGTCCTATTACGACGAAGAGGCGGGGCTGCTTGGAGGGGG
CAAGGAGTCCTACTCCTACGAGTTTGCGGAGCGTACCGTGCGCCAGGGCTTCGTGCGCAA
GGTTTTTGGCATCCTGGGCCTGCAGCTGCTGGTGACCGCCGCCGTGACCGCCGGCTTCAT
GTTCAGCGCGCCGCTGCGCACCTACGTCTACACGGCCCAGTGGCCCTTCTGGCTGGCCTT
CGGCCTGTCCATCAGTCTTATGGTCGCTATAAGCTGCTCCGAGTCGCTCCGCCGCAGCCA
CCCCTACAACATGATAACGCTGGCGGCCTTCACGCTCTGCGAAGCATTCCTGGTGGGCAC
CGTCAGCGCCGCCTACAACACGCAGCTGGTGCTGCTGGCGGTGGGCATTACAACAGTGGT
GGTGCTGGGCTGCGCGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001296A_C01 KCC001296A_c01
         (559 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_315528.1| ENSANGP00000025350 [Anopheles gambiae] gi|30175...   105  4e-22
ref|NP_725236.1| CG3814-PB [Drosophila melanogaster] gi|18447052...    98  9e-20
ref|NP_036438.2| neuromembrane protein 35; lifeguard [Homo sapie...    96  2e-19
dbj|BAA76794.1| KIAA0950 protein [Homo sapiens]                        96  2e-19
ref|NP_610824.1| CG3814-PA [Drosophila melanogaster] gi|7303389|...    96  4e-19

>ref|XP_315528.1| ENSANGP00000025350 [Anopheles gambiae] gi|30175683|gb|EAA44040.1|
           ENSANGP00000025350 [Anopheles gambiae str. PEST]
          Length = 201

 Score =  105 bits (262), Expect = 4e-22
 Identities = 59/142 (41%), Positives = 82/142 (57%)
 Frame = +2

Query: 125 GTPTMASYYDEEAGLLGGGKESYSYEFAERTVRQGFVRKVFGILGLQLLVTAAVTAGFMF 304
           G+P   S YD E+  + G      ++F ++T+R+GF++KV+ IL LQL +T    A  M 
Sbjct: 47  GSPDGYSPYDAESATVKG------FDFNDQTIRRGFIKKVYSILTLQLSITFVFVAFVMN 100

Query: 305 SAPLRTYVYTAQWPFWLAFGLSISLMVAISCSESLRRSHPYNMITLAAFTLCEAFLVGTV 484
             P + ++      FW+AF + I  M+AISC   LRR  P N I L  FT  E+FLV  V
Sbjct: 101 HEPTQLFIRRNPSLFWIAFLVMIGTMIAISCCGELRRKAPANFIFLGLFTFAESFLVSMV 160

Query: 485 SAAYNTQLVLLAVGITTVVVLG 550
           +A Y ++ VLLA GIT  V LG
Sbjct: 161 AATYKSEEVLLAFGITAAVCLG 182

>ref|NP_725236.1| CG3814-PB [Drosophila melanogaster] gi|18447052|gb|AAL68117.1|
           AT21555p [Drosophila melanogaster]
           gi|21627287|gb|AAM68611.1| CG3814-PB [Drosophila
           melanogaster]
          Length = 244

 Score = 97.8 bits (242), Expect = 9e-20
 Identities = 51/132 (38%), Positives = 77/132 (57%)
 Frame = +2

Query: 155 EEAGLLGGGKESYSYEFAERTVRQGFVRKVFGILGLQLLVTAAVTAGFMFSAPLRTYVYT 334
           +E G     +   S+ F ++++R+GF+RKV+ IL  QLL+T    + F FS   + +V  
Sbjct: 8   DETGAYTDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVFTFSKASQEWVQK 67

Query: 335 AQWPFWLAFGLSISLMVAISCSESLRRSHPYNMITLAAFTLCEAFLVGTVSAAYNTQLVL 514
               FW+A  + I  M+ ++C ES+RR  P N I L  FT+ E+FL+G V+  +    VL
Sbjct: 68  NPALFWIALAVLIVTMICMACCESVRRKTPLNFIFLFLFTVAESFLLGMVAGQFEADEVL 127

Query: 515 LAVGITTVVVLG 550
           +AVGIT  V LG
Sbjct: 128 MAVGITAAVALG 139

>ref|NP_036438.2| neuromembrane protein 35; lifeguard [Homo sapiens]
           gi|13111703|gb|AAH00051.1| Neuromembrane protein 35
           [Homo sapiens]
          Length = 316

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
 Frame = +2

Query: 131 PTMASYYDEEAGLLGGGKESYS-YEFAERTVRQGFVRKVFGILGLQLLVTAAVTAGFMFS 307
           P+ +S YD   G   G  E ++ + + ++ VR+ FVRKV+ IL +QLLVT AV A F F 
Sbjct: 70  PSSSSSYDN--GFPTGDHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTLAVVALFTFC 127

Query: 308 APLRTYVYTAQWPFWLAFGLSISLMVAISCSESLRRSHPYNMITLAAFTLCEAFLVGTVS 487
            P++ YV      +W ++ +  +  + ++C    RR  P+N+I L  FTL  A+L G +S
Sbjct: 128 DPVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLSMAYLTGMLS 187

Query: 488 AAYNTQLVLLAVGITTVVVL 547
           + YNT  VLL +GIT +V L
Sbjct: 188 SYYNTTSVLLCLGITALVCL 207

>dbj|BAA76794.1| KIAA0950 protein [Homo sapiens]
          Length = 343

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
 Frame = +2

Query: 131 PTMASYYDEEAGLLGGGKESYS-YEFAERTVRQGFVRKVFGILGLQLLVTAAVTAGFMFS 307
           P+ +S YD   G   G  E ++ + + ++ VR+ FVRKV+ IL +QLLVT AV A F F 
Sbjct: 97  PSSSSSYDN--GFPTGDHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTLAVVALFTFC 154

Query: 308 APLRTYVYTAQWPFWLAFGLSISLMVAISCSESLRRSHPYNMITLAAFTLCEAFLVGTVS 487
            P++ YV      +W ++ +  +  + ++C    RR  P+N+I L  FTL  A+L G +S
Sbjct: 155 DPVKDYVQANPGWYWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLSMAYLTGMLS 214

Query: 488 AAYNTQLVLLAVGITTVVVL 547
           + YNT  VLL +GIT +V L
Sbjct: 215 SYYNTTSVLLCLGITALVCL 234

>ref|NP_610824.1| CG3814-PA [Drosophila melanogaster] gi|7303389|gb|AAF58447.1|
           CG3814-PA [Drosophila melanogaster]
          Length = 239

 Score = 95.5 bits (236), Expect = 4e-19
 Identities = 49/119 (41%), Positives = 73/119 (61%)
 Frame = +2

Query: 194 SYEFAERTVRQGFVRKVFGILGLQLLVTAAVTAGFMFSAPLRTYVYTAQWPFWLAFGLSI 373
           S+ F ++++R+GF+RKV+ IL  QLL+T    + F FS   + +V      FW+A  + I
Sbjct: 16  SFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVFTFSKASQEWVQKNPALFWIALAVLI 75

Query: 374 SLMVAISCSESLRRSHPYNMITLAAFTLCEAFLVGTVSAAYNTQLVLLAVGITTVVVLG 550
             M+ ++C ES+RR  P N I L  FT+ E+FL+G V+  +    VL+AVGIT  V LG
Sbjct: 76  VTMICMACCESVRRKTPLNFIFLFLFTVAESFLLGMVAGQFEADEVLMAVGITAAVALG 134



EST assemble image


clone accession position
1 MX211e10_r BP089657 1 427
2 LC088e06_r AV625150 78 556
3 LC005a08_r AV619198 87 538
4 CM035c07_r AV388700 98 651




Chlamydomonas reinhardtii
Kazusa DNA Research Institute