KCC001295A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001295A_C01 KCC001295A_c01
gtaactgcatTATCAACGCGACATCAACGCAGCCCGCTTGTCAGCTTGGGACAACTTCTG
GACTTCTGACAAAGTTACGAGTTTTTCAGTCCGCGCGGAAGGCCAAAGCGTAAAATGCCT
CCACGACCGGAGCTGCCTGTTAGTTCCGCAAATCCGGGGCCGGGGCCGCACTTGGAGCTG
ACGCTACAAGAAATCGCGGACCTCAAAGAGGTGTTCGACCTCATGGACAAGGACAAGGGC
GGGACACTGAGCATTGACGAGGTCAAAGGACTCATGGAACTGCTGGGCATGAAGGTCCGG
CAGGAGGAGCTGGAGGCCATGATTGCGGAGATCGACAACTCGGGCGACGGCAACATCGAT
TTCAATGAGTTCCTGCAGGTGATGGCCAAGCCTCAGGACCTGCCGTACAAGAAGGCGGAC
GTGATGCGCGCCTTCCGCCTGTTTGCGGACAGGGACGCGCCGCAAGGCTGCATATCGCCA
GAGGCGCTGGAGCGGGCGCTGGTCCAGTACTGCAGCGGGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001295A_C01 KCC001295A_c01
         (521 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH54948.1| Unknown (protein for MGC:64243) [Xenopus laevis]        87  2e-16
gb|AAA79194.1| centrin                                                 87  2e-16
dbj|BAB24213.1| unnamed protein product [Mus musculus]                 85  6e-16
ref|NP_031619.1| centrin 1 [Mus musculus] gi|729053|sp|P41209|CE...    84  8e-16
dbj|BAB24798.1| unnamed protein product [Mus musculus]                 84  8e-16

>gb|AAH54948.1| Unknown (protein for MGC:64243) [Xenopus laevis]
          Length = 172

 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 46/124 (37%), Positives = 74/124 (59%)
 Frame = +1

Query: 124 RPELPVSSANPGPGPHLELTLQEIADLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQ 303
           +P L V++    P P  ELT ++  +++E FDL D D  GT+ + E+K  M  LG + ++
Sbjct: 7   KPSLGVTTQRKKPVPKTELTEEQKQEIREAFDLFDTDGTGTIDVKELKVAMRALGFEPKK 66

Query: 304 EELEAMIAEIDNSGDGNIDFNEFLQVMAKPQDLPYKKADVMRAFRLFADRDAPQGCISPE 483
           EE++ MIA+ID  G G I F++F+  M +       K ++M+AF+LF D +   G IS +
Sbjct: 67  EEIKKMIADIDKEGTGKIAFSDFMSAMTQKMAEKDSKEEIMKAFKLFDDDET--GKISFK 124

Query: 484 ALER 495
            L+R
Sbjct: 125 NLKR 128

 Score = 51.6 bits (122), Expect = 6e-06
 Identities = 24/64 (37%), Positives = 38/64 (58%)
 Frame = +1

Query: 199 DLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNSGDGNIDFNEFLQ 378
           ++ + F L D D+ G +S   +K + + LG  +  EEL+ MI E D  GDG ++  EFL+
Sbjct: 105 EIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLR 164

Query: 379 VMAK 390
           +M K
Sbjct: 165 IMKK 168

>gb|AAA79194.1| centrin
          Length = 172

 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 47/124 (37%), Positives = 74/124 (58%)
 Frame = +1

Query: 124 RPELPVSSANPGPGPHLELTLQEIADLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQ 303
           +P L V++    P P  ELT ++  +++E FDL D D  GT+ + E+K  M  LG + ++
Sbjct: 7   KPSLGVTTQRKKPVPKTELTEEQKQEIREAFDLFDTDGTGTIDVKELKVAMRALGFEPKK 66

Query: 304 EELEAMIAEIDNSGDGNIDFNEFLQVMAKPQDLPYKKADVMRAFRLFADRDAPQGCISPE 483
           EE++ MIA+ID  G G I F++F+  M +       K ++M+AFRLF D +   G IS +
Sbjct: 67  EEIKKMIADIDKEGTGKIAFSDFMCAMTQKMAEKDSKEEIMKAFRLFDDDET--GKISFK 124

Query: 484 ALER 495
            L+R
Sbjct: 125 NLKR 128

 Score = 51.2 bits (121), Expect = 8e-06
 Identities = 24/64 (37%), Positives = 38/64 (58%)
 Frame = +1

Query: 199 DLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNSGDGNIDFNEFLQ 378
           ++ + F L D D+ G +S   +K + + LG  +  EEL+ MI E D  GDG ++  EFL+
Sbjct: 105 EIMKAFRLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLR 164

Query: 379 VMAK 390
           +M K
Sbjct: 165 IMKK 168

>dbj|BAB24213.1| unnamed protein product [Mus musculus]
          Length = 172

 Score = 84.7 bits (208), Expect = 6e-16
 Identities = 45/111 (40%), Positives = 67/111 (59%)
 Frame = +1

Query: 163 GPHLELTLQEIADLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNS 342
           GP  ELT  +  +++E FDL D D  GT+ + E+K  M  LG + R+EE++ MI+E+D  
Sbjct: 20  GPKPELTEDQKQEVREAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKE 79

Query: 343 GDGNIDFNEFLQVMAKPQDLPYKKADVMRAFRLFADRDAPQGCISPEALER 495
             G I FN+FL VM +       K ++++AFRLF D +   G IS + L+R
Sbjct: 80  ATGKISFNDFLAVMTRKMAEKDTKEEILKAFRLFDDDET--GKISFKNLKR 128

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = +1

Query: 199 DLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNSGDGNIDFNEFLQ 378
           ++ + F L D D+ G +S   +K +   LG  +  EEL+ MI E D  GDG ++  EFL+
Sbjct: 105 EILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLK 164

Query: 379 VMAK 390
           +M K
Sbjct: 165 IMKK 168

>ref|NP_031619.1| centrin 1 [Mus musculus] gi|729053|sp|P41209|CET1_MOUSE Centrin 1
           (Caltractin) gi|481364|pir||S38531 caltractin - mouse
           gi|565281|dbj|BAA03806.1| caltractin [Mus musculus]
           gi|5669591|gb|AAD46390.1|AF080591_1 centrin [Mus
           musculus] gi|12838478|dbj|BAB24217.1| unnamed protein
           product [Mus musculus] gi|12838620|dbj|BAB24266.1|
           unnamed protein product [Mus musculus]
           gi|12854289|dbj|BAB29985.1| unnamed protein product [Mus
           musculus] gi|26345798|dbj|BAC36550.1| unnamed protein
           product [Mus musculus]
          Length = 172

 Score = 84.3 bits (207), Expect = 8e-16
 Identities = 45/111 (40%), Positives = 67/111 (59%)
 Frame = +1

Query: 163 GPHLELTLQEIADLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNS 342
           GP  ELT  +  +++E FDL D D  GT+ + E+K  M  LG + R+EE++ MI+E+D  
Sbjct: 20  GPKPELTEDQKQEVREAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKE 79

Query: 343 GDGNIDFNEFLQVMAKPQDLPYKKADVMRAFRLFADRDAPQGCISPEALER 495
             G I FN+FL VM +       K ++++AFRLF D +   G IS + L+R
Sbjct: 80  ATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDET--GKISFKNLKR 128

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = +1

Query: 199 DLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNSGDGNIDFNEFLQ 378
           ++ + F L D D+ G +S   +K +   LG  +  EEL+ MI E D  GDG ++  EFL+
Sbjct: 105 EILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLK 164

Query: 379 VMAK 390
           +M K
Sbjct: 165 IMKK 168

>dbj|BAB24798.1| unnamed protein product [Mus musculus]
          Length = 172

 Score = 84.3 bits (207), Expect = 8e-16
 Identities = 45/111 (40%), Positives = 67/111 (59%)
 Frame = +1

Query: 163 GPHLELTLQEIADLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNS 342
           GP  ELT  +  +++E FDL D D  GT+ + E+K  M  LG + R+EE++ MI+E+D  
Sbjct: 20  GPKPELTEDQKQEVREAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKE 79

Query: 343 GDGNIDFNEFLQVMAKPQDLPYKKADVMRAFRLFADRDAPQGCISPEALER 495
             G I FN+FL VM +       K ++++AFRLF D +   G IS + L+R
Sbjct: 80  ATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDET--GKISFKNLKR 128

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 23/64 (35%), Positives = 36/64 (55%)
 Frame = +1

Query: 199 DLKEVFDLMDKDKGGTLSIDEVKGLMELLGMKVRQEELEAMIAEIDNSGDGNIDFNEFLQ 378
           ++ + F L D D+ G +S   +K +   LG  +  EEL+  I E D  GDG ++  EFL+
Sbjct: 105 EILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEKIDEADRDGDGEVNEEEFLK 164

Query: 379 VMAK 390
           +M K
Sbjct: 165 IMKK 168



EST assemble image


clone accession position
1 CM035c05_r AV388694 1 487
2 LC037g08_r AV621557 11 521




Chlamydomonas reinhardtii
Kazusa DNA Research Institute