KCC001290A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001290A_C01 KCC001290A_c01
gcggtagcagcagcacgggcgccacgcccacattgcaggggcctcctgcggcgcggcgag
cgcaggtggcgcggcagcgcCTGCGGGAGGCCGTGGCAGTGCGATCGATGCCCGATGACT
CTAGCGGCGCAGGCAGCAGCAGCGGCGGCGCGGCCGGTGGCGCAGCGGCGGCGCGGGACT
CGTGATTTACCCTAGGCATGAAGATTGCTGACCGCGAGAGGCATCTATCATCAAGGCTGT
CGCTACGGTGTACGCCAAGGGTGGTATGGACCTGCCGCAGGGGCTAGCACATGGCGACAA
TGGGCGTGTGGTGCCGGTGGCGGCAGCGCCGGCGGGCAGCAGCAGCGGCAGCGATGCGGG
CTCGTCGTGAGCGAAACAAAGCTCGTTATACTTTACTTAAGGATGGAGCAATCGCAAGTG
AGGGGCGGTAACATTTCGGTGAAGTGTGTCGCCAAGTGCGCCGTTGGCCTCCAGAGTGGC
TACGTGAGCATAGTGGCGGACGCGTCATCCAAGGGGCGTGGACGACACATTCCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001290A_C01 KCC001290A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN85281.1| major ampullate gland dragline silk protein-2 [Ar...    31  0.003
ref|XP_324453.1| predicted protein [Neurospora crassa] gi|288813...    28  0.007
gb|AAC14589.1| minor ampullate silk protein MiSp1 [Nephila clavi...    31  0.017
emb|CAA67664.1| B-HLH DNA binding protein [Homo sapiens]               33  0.031
ref|NP_496700.1| putative cytoplasmic protein (2M924) [Caenorhab...    26  0.038

>gb|AAN85281.1| major ampullate gland dragline silk protein-2 [Araneus ventricosus]
          Length = 429

 Score = 31.2 bits (69), Expect = 8.9
 Identities = 32/111 (28%), Positives = 39/111 (34%)
 Frame = +2

Query: 35  AGASCGAASAGGAAAPAGGRGSAIDAR*L*RRRQQQRRRGRWRSGGAGLVIYPRHEDC*P 214
           AGA   AA+A GA A AGG G                  G+    GAG            
Sbjct: 204 AGAGAAAAAAAGAGAGAGGAGG----------------YGQGYGAGAG------------ 235

Query: 215 REASIIKAVATVYAKGGMDLPQGLAHGDNGRVVPVAAAPAGSSSGSDAGSS 367
              +   A A+  A G     QG   G        AAA AG+S G   G++
Sbjct: 236 -AGAAAGAGASAGAGGAGGYGQGYGGGAGSSAGSAAAAGAGASGGYGGGAA 285

 Score = 28.9 bits (63), Expect(3) = 0.003
 Identities = 17/38 (44%), Positives = 17/38 (44%)
 Frame = +1

Query: 247 GVRQGWYGPAAGASTWRQWACGAGGGSAGGQQQRQRCG 360
           G  QG YG  AGA        GAG G AGG  Q    G
Sbjct: 103 GYGQG-YGTGAGAGAGASAGAGAGAGGAGGYGQGYGAG 139

 Score = 28.5 bits (62), Expect(3) = 0.003
 Identities = 13/21 (61%), Positives = 14/21 (65%)
 Frame = +2

Query: 35 AGASCGAASAGGAAAPAGGRG 97
          AGA  GA +A GA A AGG G
Sbjct: 30 AGAGAGAGAAAGAGAGAGGAG 50

 Score = 28.1 bits (61), Expect(2) = 7.6
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = +1

Query: 247 GVRQGWYGPAAGASTWRQWACGAGGGSAGGQQQ 345
           G  QG YG   GA      A GAG G AGG  Q
Sbjct: 161 GYGQG-YGAGVGAGAGAAAAAGAGAGGAGGYGQ 192

 Score = 27.7 bits (60), Expect(2) = 1.0
 Identities = 13/21 (61%), Positives = 14/21 (65%)
 Frame = +2

Query: 35  AGASCGAASAGGAAAPAGGRG 97
           AGA   AA+A GA A AGG G
Sbjct: 140 AGAGAAAAAAAGAGAGAGGAG 160

 Score = 25.4 bits (54), Expect(2) = 1.0
 Identities = 11/17 (64%), Positives = 13/17 (75%)
 Frame = +3

Query: 123 SGAGSSSGGAAGGAAAA 173
           SGAG+ +G  AG AAAA
Sbjct: 196 SGAGAGAGAGAGAAAAA 212

 Score = 23.5 bits (49), Expect(3) = 0.003
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 123 SGAGSSSGGAAGGAAAARDS 182
           +GAG+ +  AAG  A AR S
Sbjct: 82  AGAGAGAAAAAGAGAGARGS 101

 Score = 21.9 bits (45), Expect(2) = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 120 SSGAGSSSGGAAG 158
           S+GAG+ +GGA G
Sbjct: 119 SAGAGAGAGGAGG 131

>ref|XP_324453.1| predicted protein [Neurospora crassa] gi|28881381|emb|CAD70422.1|
           conserved hypothetical protein [Neurospora crassa]
           gi|28918167|gb|EAA27846.1| predicted protein [Neurospora
           crassa]
          Length = 429

 Score = 28.1 bits (61), Expect(3) = 0.064
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGGRGSA 103
           G  A   GA+ G A+AGG A+ AGG GSA
Sbjct: 253 GAAAGGGGAAAGGATAGGGASAAGG-GSA 280

 Score = 28.1 bits (61), Expect(2) = 1.3
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGGRGSA 103
           G  A   GA+ G A+AGG A+ AGG GSA
Sbjct: 360 GAAAGGGGAAAGGATAGGGASAAGG-GSA 387

 Score = 27.3 bits (59), Expect(3) = 0.13
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGG 91
           G  A   GAS G AS GGAAA  GG
Sbjct: 236 GGGAAKGGASKGGASKGGAAAGGGG 260

 Score = 27.3 bits (59), Expect(3) = 0.007
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGG 91
           G  A   GAS G AS GGAAA  GG
Sbjct: 164 GATAGGGGASKGGASKGGAAAGGGG 188

 Score = 27.3 bits (59), Expect(2) = 2.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGG 91
           G  A   GAS G A+AGG  A AGG
Sbjct: 169 GGGASKGGASKGGAAAGGGGAAAGG 193

 Score = 26.9 bits (58), Expect(3) = 0.007
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 GVRQGWYGPAAGASTWRQWACGAGGGSAGG 336
           G   G  G AAG +T    A  AGGGSA G
Sbjct: 253 GAAAGGGGAAAGGATAGGGASAAGGGSAKG 282

 Score = 26.9 bits (58), Expect(3) = 0.064
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 GVRQGWYGPAAGASTWRQWACGAGGGSAGG 336
           G   G  G AAG +T    A  AGGGSA G
Sbjct: 360 GAAAGGGGAAAGGATAGGGASAAGGGSAKG 389

 Score = 26.9 bits (58), Expect(3) = 0.082
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +2

Query: 38  GASCGAASAGGAAAPAGG 91
           GAS G AS GGAAA  GG
Sbjct: 142 GASKGGASKGGAAAGGGG 159

 Score = 26.6 bits (57), Expect(3) = 0.58
 Identities = 12/18 (66%), Positives = 13/18 (71%)
 Frame = +2

Query: 38  GASCGAASAGGAAAPAGG 91
           GAS G A+AGG  A AGG
Sbjct: 248 GASKGGAAAGGGGAAAGG 265

 Score = 26.6 bits (57), Expect(3) = 0.13
 Identities = 11/17 (64%), Positives = 14/17 (81%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAA 170
           ++GA S  GGA+GGAAA
Sbjct: 290 AAGAASGKGGASGGAAA 306

 Score = 26.6 bits (57), Expect(2) = 7.6
 Identities = 12/18 (66%), Positives = 13/18 (71%)
 Frame = +2

Query: 38  GASCGAASAGGAAAPAGG 91
           GAS G A+AGG  A AGG
Sbjct: 355 GASKGGAAAGGGGAAAGG 372

 Score = 26.6 bits (57), Expect(3) = 2.0
 Identities = 12/18 (66%), Positives = 13/18 (71%)
 Frame = +2

Query: 38  GASCGAASAGGAAAPAGG 91
           GAS G A+AGG  A AGG
Sbjct: 147 GASKGGAAAGGGGAAAGG 164

 Score = 25.0 bits (53), Expect(3) = 0.007
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAAAR 176
           ++G G+++GGAA G  AA+
Sbjct: 223 TAGGGAAAGGAAAGGGAAK 241

 Score = 24.6 bits (52), Expect(2) = 1.3
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAA 167
           S G  +S GGAAGG+A
Sbjct: 392 SKGGAASGGGAAGGSA 407

 Score = 24.6 bits (52), Expect(3) = 0.58
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAAA 173
           ++G GS+ GGA+ G AAA
Sbjct: 274 AAGGGSAKGGASKGGAAA 291

 Score = 24.6 bits (52), Expect(2) = 2.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAAA 173
           S G  S  G AAGG AAA
Sbjct: 202 SKGGASKGGAAAGGGAAA 219

 Score = 24.3 bits (51), Expect(3) = 0.082
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAAA 173
           + G G+S GGA+ G AAA
Sbjct: 167 AGGGGASKGGASKGGAAA 184

 Score = 24.3 bits (51), Expect(3) = 0.082
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 247 GVRQGWYGPAAGASTWRQWACGAGGGSAGG 336
           G   G  G AAG +T    A   GG S GG
Sbjct: 181 GAAAGGGGAAAGGATAGGGAASKGGASKGG 210

 Score = 23.5 bits (49), Expect(2) = 7.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAAA 173
           ++G GS+ GGA+ G AA+
Sbjct: 381 AAGGGSAKGGASKGGAAS 398

 Score = 22.7 bits (47), Expect(3) = 2.0
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 120 SSGAGSSSGGA-AGGAAAAR 176
           + G G+++GGA AGG AA++
Sbjct: 184 AGGGGAAAGGATAGGGAASK 203

 Score = 21.2 bits (43), Expect(3) = 0.58
 Identities = 10/31 (32%), Positives = 14/31 (44%)
 Frame = +1

Query: 268 GPAAGASTWRQWACGAGGGSAGGQQQRQRCG 360
           G AAGA++ +  A G      GG     + G
Sbjct: 288 GAAAGAASGKGGASGGAAAGGGGGDSSAKGG 318

 Score = 21.2 bits (43), Expect(3) = 2.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 268 GPAAGASTWRQWACGAGGGSAGG 336
           G AAG       A   GG +AGG
Sbjct: 210 GAAAGGGAAAGGATAGGGAAAGG 232

 Score = 20.8 bits (42), Expect(3) = 0.064
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 126 GAGSSSGGAAGGAAAA 173
           G  S+ GGA+ G AAA
Sbjct: 311 GDSSAKGGASKGGAAA 326

 Score = 20.8 bits (42), Expect(3) = 0.13
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 268 GPAAGASTWRQWACGAGGGSAGG 336
           G AAG +T        GG S GG
Sbjct: 323 GAAAGGATAGGGGAAKGGASKGG 345

>gb|AAC14589.1| minor ampullate silk protein MiSp1 [Nephila clavipes]
          Length = 988

 Score = 31.2 bits (69), Expect = 8.9
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGGRGSAIDA 112
           G+  + AGA  GAA+A GA A AGG G    A
Sbjct: 397 GQGGYGAGAGAGAAAAAGAGAGAGGYGRGAGA 428

 Score = 29.6 bits (65), Expect(2) = 0.27
 Identities = 29/71 (40%), Positives = 29/71 (40%)
 Frame = +1

Query: 124 AAQAAAAAARPVAQRRRGTRDLP*A*RLLTARGIYHQGCRYGVRQGWYGPAAGASTWRQW 303
           AA AA A A   A   RG R          A G       YG  QG YG  AGA      
Sbjct: 719 AAAAAGAGAGGAAGYSRGGRAGAAGAGAGAAAGAGAGAGGYG-GQGGYGAGAGAGAAA-- 775

Query: 304 ACGAGGGSAGG 336
           A GAG G AGG
Sbjct: 776 AAGAGSGGAGG 786

 Score = 28.9 bits (63), Expect(2) = 0.077
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +2

Query: 14  HGRHAHIAGASCGAASAGGAAAPAGGRG 97
           +GR A  AGA+ GA +A GA A AGG G
Sbjct: 787 YGRGAG-AGAAAGAGAAAGAGAGAGGYG 813

 Score = 28.1 bits (61), Expect(2) = 0.077
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 217  RGIYHQGCRYGVRQGWYGPAAGASTWRQWACGAGGGSAGGQQQR--QRCGLVVSET 378
            RG Y +G   G   G  G  AGA      A GAG G  G ++     RC   V+ T
Sbjct: 834  RGGYGRGAGAGGYGGQGGYGAGAGAGAAAAAGAGAGGYGDKEIACWSRCRYTVAST 889

 Score = 28.1 bits (61), Expect(3) = 0.017
 Identities = 16/35 (45%), Positives = 17/35 (47%)
 Frame = +1

Query: 256 QGWYGPAAGASTWRQWACGAGGGSAGGQQQRQRCG 360
           QG YG  AGA      A GAG G A G  +  R G
Sbjct: 708 QGGYGAGAGAGAAA--AAGAGAGGAAGYSRGGRAG 740

 Score = 27.3 bits (59), Expect(3) = 0.017
 Identities = 14/32 (43%), Positives = 17/32 (52%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGGRGSAIDA 112
           G+  + AGA  GAA+A GA A   G G    A
Sbjct: 651 GQGGYGAGAGAGAAAAAGAGAGGAGYGRGAGA 682

 Score = 26.6 bits (57), Expect(3) = 1.1
 Identities = 17/33 (51%), Positives = 17/33 (51%)
 Frame = +1

Query: 235 GCRYGVRQGWYGPAAGASTWRQWACGAGGGSAG 333
           G  YG  QG YG  AGA      A GAG G AG
Sbjct: 646 GAGYG-GQGGYGAGAGAGA--AAAAGAGAGGAG 675

 Score = 25.4 bits (54), Expect(2) = 0.27
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 35  AGASCGAASAGGAAAPAGGRGSA 103
           AGA  GAA+  GA A AG    A
Sbjct: 680 AGAGAGAAAGAGAGAAAGAGAGA 702

 Score = 25.0 bits (53), Expect(3) = 3.6
 Identities = 13/31 (41%), Positives = 14/31 (44%)
 Frame = +1

Query: 247 GVRQGWYGPAAGASTWRQWACGAGGGSAGGQ 339
           G  +G    AAGA        GAG G  GGQ
Sbjct: 732 GYSRGGRAGAAGAGAGAAAGAGAGAGGYGGQ 762

 Score = 23.9 bits (50), Expect(3) = 1.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 17  GRHAHIAGASCGAASAGGAAAPAGGRG 97
           G+  + AGA  GAA+A  AA  AGG G
Sbjct: 600 GQGGYGAGAGAGAAAA--AATGAGGAG 624

 Score = 23.5 bits (49), Expect(3) = 3.6
 Identities = 11/26 (42%), Positives = 13/26 (49%)
 Frame = +2

Query: 35  AGASCGAASAGGAAAPAGGRGSAIDA 112
           AGA   AA+  GA     GRG+   A
Sbjct: 659 AGAGAAAAAGAGAGGAGYGRGAGAGA 684

 Score = 22.3 bits (46), Expect(3) = 0.017
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 126 GAGSSSGGAAGGAAAA 173
           GAG+ +G AAG  A A
Sbjct: 679 GAGAGAGAAAGAGAGA 694

 Score = 20.8 bits (42), Expect(3) = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 120 SSGAGSSSGGAAGGAAAAR 176
           ++ AG+ +GGAAG +   R
Sbjct: 720 AAAAGAGAGGAAGYSRGGR 738

 Score = 20.8 bits (42), Expect(3) = 1.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 126 GAGSSSGGAAGGAA 167
           GAG+ +G AAG  A
Sbjct: 629 GAGAGAGAAAGAGA 642

>emb|CAA67664.1| B-HLH DNA binding protein [Homo sapiens]
          Length = 206

 Score = 33.1 bits (74), Expect(2) = 0.031
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 9   SSTGATPTLQGPPAARRAQVARQRLREAVAVRSMPDDSSGAGSSSGGAAGGAAAARD 179
           S++   P  Q PP+A+R    R+  R           S+G G+  GGAAGGA    D
Sbjct: 18  SNSEEEPDRQQPPSAKRGARKRRSSRR----------SAGGGAGPGGAAGGAVGGGD 64

 Score = 25.4 bits (54), Expect(2) = 0.031
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 271 PAAGASTWRQWACGAGGGSAGG 336
           PA G    +   CG GGG+ GG
Sbjct: 69  PAQGKRGKKSAGCGGGGGAGGG 90

>ref|NP_496700.1| putative cytoplasmic protein (2M924) [Caenorhabditis elegans]
           gi|7509615|pir||T26667 hypothetical protein Y38E10A.q -
           Caenorhabditis elegans gi|5824740|emb|CAB54408.1|
           Hypothetical protein Y38E10A.17 [Caenorhabditis elegans]
          Length = 586

 Score = 25.8 bits (55), Expect(3) = 0.038
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 274 AAGASTWRQWACGAGGGSAGG 336
           +AG+S  +    GAGGG AGG
Sbjct: 529 SAGSSARKSGESGAGGGGAGG 549

 Score = 25.4 bits (54), Expect(3) = 0.038
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 310 GAGGGSAGGQQQRQRCGLVVSETKLV 387
           GAGGG AGG +     G   +E K V
Sbjct: 546 GAGGGKAGGAKNSASYGSSANEVKSV 571

 Score = 25.4 bits (54), Expect(3) = 0.038
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 123 SGAGSSSGGAAGGAAAARDS 182
           +G G S G  AGGA  AR+S
Sbjct: 470 AGGGGSGGYGAGGAGGARNS 489



EST assemble image


clone accession position
1 HC055f07_r AV636139 1 436
2 CM034f05_r AV388653 163 535




Chlamydomonas reinhardtii
Kazusa DNA Research Institute