KCC001286A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001286A_C01 KCC001286A_c01
aattgaagaaGCGAAACAAGCTCCATTACATATTATATAGCTATAGCCCCGCCGCGGTAG
CTCTTATCTTTCTCAGAAATGCTCGCGCACGCCGTGCAGCGCTCTTTGGGCAGGCTGCAG
CGCCACTCCACTCGTATCGCTCCCTTCAGGACAGGGCGACCATCGTCCTCGAGGATGGCG
GCACGCGCTTCAAGTGCGGACCGGGTTGTGCACGTCGCACACATTCTTTTACCGCTGGAC
CAGGAGCCAAAAGCCAAGGAGCTGGAGGAAAAGTTGGCGGGTGGTGCGGCTTTTGAGGAG
CTGGCGCGCGAGCACTCAACCTGTGGCTCCGCCAAGAAGGGCGGCGAGCTGGGCTGGCTG
TCTCGCGGGACGTTCTTCCCTCAGTTTGAGGCGGCGGCATTTGCGGCGCCGGTGGGCGGC
ATCACCCGCGCCACCACCGGACGCGGCCTGCATGTGATCAAGGTGCTAGCGGAGAAGTCC
AGGCCACATCCAGCAGATGAACCCCGAGGAGCTGTACGAGATGATCCACAACCCTGCGCT
GCTGGAGGACGTGCAGCTTGTGGACGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001286A_C01 KCC001286A_c01
         (567 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM63512.1| peptidyl-prolyl cis-trans isomerase-like protein ...    84  1e-16
ref|NP_568372.1| peptidyl-prolyl cis-trans isomerase - like prot...    82  3e-16
pir||T52622 probable peptidylprolyl isomerase (EC 5.2.1.8) [impo...    76  2e-14
ref|NP_830947.1| Peptidyl-prolyl cis-trans isomerase [Bacillus c...    72  7e-12
ref|NP_698920.1| peptidyl-prolyl cis-trans isomerase [Brucella s...    71  1e-11

>gb|AAM63512.1| peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis
           thaliana]
          Length = 299

 Score = 84.0 bits (206), Expect(2) = 1e-16
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
 Frame = +1

Query: 22  SITYYIAIAPPR*LLSFSEMLAHAVQRSLGRLQRHSTRIAPFR-TGRPSSSRMAA----- 183
           SIT  +AIA P  L  FS+     +   +  L+       P R +G P+    A+     
Sbjct: 28  SITPTLAIASPPHLRWFSKFSRQFLGGRISSLRPRIPSPCPIRLSGFPALKMRASFSSGS 87

Query: 184 RASSADRVVHVAHILLPLDQEPKAKELEEKLAGGAAFEELAREHSTCGSAKKGGELGWLS 363
             SSA R + V H+L+  D      EL++K   G    +LA E+S C S K GG LGW+ 
Sbjct: 88  SGSSASREILVQHLLVKNDDVELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVK 147

Query: 364 RGTFFPQFEAAAFAAPVGGITRATTGRGLHVIKVLAEK 477
            G   P+FE AAF A +  + R  T  GLH+++VL+E+
Sbjct: 148 LGQMVPEFEEAAFKAELDQVVRCRTQFGLHLLQVLSER 185

 Score = 24.3 bits (51), Expect(2) = 1e-16
 Identities = 7/26 (26%), Positives = 17/26 (64%)
 Frame = +2

Query: 488 IQQMNPEELYEMIHNPALLEDVQLVD 565
           ++ +  EEL+  + +P  +++ QL+D
Sbjct: 188 VKDIQVEELHSKMQDPVFMDEAQLID 213

>ref|NP_568372.1| peptidyl-prolyl cis-trans isomerase - like protein [Arabidopsis
           thaliana] gi|13877805|gb|AAK43980.1|AF370165_1 putative
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana] gi|16323478|gb|AAL15233.1| putative
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana]
          Length = 299

 Score = 82.4 bits (202), Expect(2) = 3e-16
 Identities = 55/158 (34%), Positives = 80/158 (49%), Gaps = 6/158 (3%)
 Frame = +1

Query: 22  SITYYIAIAPPR*LLSFSEMLAHAVQRSLGRLQRHSTRIAPFR-TGRPSSSRMAA----- 183
           SIT  +AIA P  L  FS+     +   +  L+       P R +G P+    A+     
Sbjct: 28  SITPTLAIASPPHLRWFSKFSRQFLGGRISSLRPRIPSPCPIRLSGFPALKMRASFSSGS 87

Query: 184 RASSADRVVHVAHILLPLDQEPKAKELEEKLAGGAAFEELAREHSTCGSAKKGGELGWLS 363
             SSA R + V H+L+  +      EL++K   G    +LA E+S C S K GG LGW+ 
Sbjct: 88  SGSSASREILVQHLLVKNNDVELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVK 147

Query: 364 RGTFFPQFEAAAFAAPVGGITRATTGRGLHVIKVLAEK 477
            G   P+FE AAF A +  + R  T  GLH+++VL+E+
Sbjct: 148 LGQMVPEFEEAAFKAELNQVVRCRTQFGLHLLQVLSER 185

 Score = 24.3 bits (51), Expect(2) = 3e-16
 Identities = 7/26 (26%), Positives = 17/26 (64%)
 Frame = +2

Query: 488 IQQMNPEELYEMIHNPALLEDVQLVD 565
           ++ +  EEL+  + +P  +++ QL+D
Sbjct: 188 VKDIQVEELHSKMQDPVFMDEAQLID 213

>pir||T52622 probable peptidylprolyl isomerase (EC 5.2.1.8) [imported] -
           Arabidopsis thaliana gi|2246380|emb|CAB06699.1|
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana]
          Length = 221

 Score = 76.3 bits (186), Expect(2) = 2e-14
 Identities = 39/96 (40%), Positives = 56/96 (57%)
 Frame = +1

Query: 190 SSADRVVHVAHILLPLDQEPKAKELEEKLAGGAAFEELAREHSTCGSAKKGGELGWLSRG 369
           SSA R + V H+L+  +      EL++K   G    +LA E+S C S K GG LGW+  G
Sbjct: 12  SSASREILVQHLLVKNNDVELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVKLG 71

Query: 370 TFFPQFEAAAFAAPVGGITRATTGRGLHVIKVLAEK 477
              P+FE AAF A +  + R  T  GLH+++VL+E+
Sbjct: 72  QMVPEFEEAAFKAELNQVVRCRTQFGLHLLQVLSER 107

 Score = 24.3 bits (51), Expect(2) = 2e-14
 Identities = 7/26 (26%), Positives = 17/26 (64%)
 Frame = +2

Query: 488 IQQMNPEELYEMIHNPALLEDVQLVD 565
           ++ +  EEL+  + +P  +++ QL+D
Sbjct: 110 VKDIQVEELHSKMQDPVFMDEAQLID 135

>ref|NP_830947.1| Peptidyl-prolyl cis-trans isomerase [Bacillus cereus ATCC 14579]
           gi|29894859|gb|AAP08148.1| Peptidyl-prolyl cis-trans
           isomerase [Bacillus cereus ATCC 14579]
          Length = 285

 Score = 71.6 bits (174), Expect = 7e-12
 Identities = 44/106 (41%), Positives = 65/106 (60%), Gaps = 2/106 (1%)
 Frame = +1

Query: 208 VHVAHILLPLDQEPKAKELEEKLAGGAAFEELAREHSTCGSAK-KGGELGWLSRGTFFPQ 384
           +  +HIL+    E +AKE++ KL  GA+FEELA++ S    +K KGG+LG+ + GT  P+
Sbjct: 137 IKASHILV--SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPE 194

Query: 385 FEAAAFAAPVGGITR-ATTGRGLHVIKVLAEKSRPHPADEPRGAVR 519
           FE AA+   VG I+    +  G HVIK L +K    P DE + ++R
Sbjct: 195 FETAAYKLNVGQISNPVKSSNGYHVIK-LTDKKALKPYDEVKDSIR 239

>ref|NP_698920.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
           gi|23348814|gb|AAN30835.1|AE014483_14 peptidyl-prolyl
           cis-trans isomerase [Brucella suis 1330]
          Length = 331

 Score = 70.9 bits (172), Expect = 1e-11
 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
 Frame = +1

Query: 208 VHVAHILLPLDQEPKAKELEEKLAGGAAFEELAREHSTCGSAKKGGELGWLSRGTFFPQF 387
           V   HIL+   +E +A  + +KL GGA FE+LA+  ST G+A  GG+LG+ S G   P+F
Sbjct: 172 VRARHILVKTKEEAEA--IIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEF 229

Query: 388 EAAAFAAPVGGITR--ATTGRGLHVIKVLAEKSRPHPA-DEPRGAVR 519
           E AAFA   G  T+    T  G HVI++   +++  PA D+ +  +R
Sbjct: 230 EKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIR 276



EST assemble image


clone accession position
1 LC030c01_r AV621033 1 500
2 LC030e01_r AV621051 11 528
3 CM034d05_r AV388651 50 569




Chlamydomonas reinhardtii
Kazusa DNA Research Institute