KCC001275A_c03
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001275A_C03 KCC001275A_c03
ccaatccccggcagtacgggtgtgtgtcccatgtccgaagttaccccatgccctgtggta
gcggaacccggcgaggagcgAACACAAGTCAAACGCCTCTGCAGAGACAATGCTCTTTCC
TCCTAGCCCTCAGTGCAACCGCTTCTTCTCAAATTCAACATAGCGCTATAGCTTTGTAGG
TGGAGGCTTCCCCTGCCATTTGCGCCTAAGCCTCTCCCTCAGCCGTCTGGAAGCCCTGCA
CGAATGGAGGCACTATCGGCAGCAATCATGGGTGGTTTCATGGTCGCTGGATGTCTGATA
CTCAAGTCCGGGATGGAACGAGTGGGGCTCCAGACCGTCGACCATATGCGGGAGCGTGGG
CCCCACTTCGTTTGGCCCGCCAAGCCCGTCCCCCCGCCCGCCCGGAGCCGCGCGTCCAAT
TAAGGGGCTACCATGTCGGACATGCGCGCGGCCTCAGGCACCTGGGACTACCACGGGCGT
GTGAGCACCACTCACGCCAAGGATGGGAGCCGGAGGCAGGGCGGTCGCATCAAGACTTTG
ACCGTGGTAAAGATCTGTAGTCTGCCTTCTGTTAGTCCGCCAGTGGCGTGCTGATGGGTT
CGCGTCGTTGTGTGAGTATAGGAATCAGCTGCGGCTCGACGAAGATGAGTTTGGGGAGGG
TGTGAAGATGCGGCACTACTGCTCGGGGGTTTATTTGGAGCGAGAGCCACGTATGGCGGC
TGTGGTGAGCTGGGTGTCGAGCATGTGGACCCTAACCCCAAGCCTAACCCCCAAACACGG
GCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001275A_C03 KCC001275A_c03
         (783 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF80491.1|AF164027_1 surface antigen P2 [Leishmania tropica]       39  0.072
gb|AAM97540.1| PI 3-kinase enhancer long isoform [Homo sapiens]        30  0.075
gb|AAM97539.1| PI 3-kinase enhancer long isoform [Rattus norvegi...    30  0.075
ref|NP_075415.1| nuclear GTPase PIKE [Rattus norvegicus] gi|9716...    30  0.077
ref|NP_572325.1| CG3950-PA [Drosophila melanogaster] gi|22831824...    37  0.46

>gb|AAF80491.1|AF164027_1 surface antigen P2 [Leishmania tropica]
          Length = 626

 Score = 39.3 bits (90), Expect = 0.072
 Identities = 22/83 (26%), Positives = 35/83 (41%)
 Frame = -2

Query: 749 STCSTPSSPQPPYVALAPNKPPSSSAASSHPPQTHLRRAAADSYTHTTTRTHQHATGGLT 570
           +T +T ++ +PP       KPP+++  ++ PP T          T TTT T   AT   T
Sbjct: 469 TTTTTTTTTKPPTTTTTTTKPPTTTTTTTKPPTTTTTTTTKPPTTTTTTTTEPPATTTTT 528

Query: 569 EGRLQIFTTVKVLMRPPCLRLPS 501
             +    TT +    P     P+
Sbjct: 529 TTKPPTTTTTEAPAEPTTTATPT 551

>gb|AAM97540.1| PI 3-kinase enhancer long isoform [Homo sapiens]
          Length = 1192

 Score = 30.0 bits (66), Expect(2) = 0.075
 Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 3/64 (4%)
 Frame = +2

Query: 353 SVGPTSFGPPSPSPRPPGAARPIKGLPCRTC---ARPQAPGTTTGV*APLTPRMGAGGRA 523
           S G     PP+ SP P   ARP+   P R     A P  P  + G    L+P    GG  
Sbjct: 82  SAGAGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGG----LSPDSKPGGAP 137

Query: 524 VASR 535
            +SR
Sbjct: 138 SSSR 141

 Score = 28.1 bits (61), Expect(2) = 0.075
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 652 WGGCEDAALLLGGLFGARATYGGCGELGVEHVDPNPKPNP 771
           WGG E      GG+ G+ + + G G   ++   P P P P
Sbjct: 150 WGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKP 189

>gb|AAM97539.1| PI 3-kinase enhancer long isoform [Rattus norvegicus]
          Length = 1186

 Score = 30.0 bits (66), Expect(2) = 0.075
 Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 3/64 (4%)
 Frame = +2

Query: 353 SVGPTSFGPPSPSPRPPGAARPIKGLPCRTC---ARPQAPGTTTGV*APLTPRMGAGGRA 523
           S G     PP+ SP P   ARP+   P R     A P  P  + G    L+P    GG  
Sbjct: 82  SAGAGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGG----LSPDSKPGGAP 137

Query: 524 VASR 535
            +SR
Sbjct: 138 SSSR 141

 Score = 28.1 bits (61), Expect(2) = 0.075
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 652 WGGCEDAALLLGGLFGARATYGGCGELGVEHVDPNPKPNP 771
           WGG E      GG+ G+ + + G G   ++   P P P P
Sbjct: 150 WGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKP 189

>ref|NP_075415.1| nuclear GTPase PIKE [Rattus norvegicus] gi|9716661|gb|AAF97595.1|
           nuclear GTPase PIKE [Rattus norvegicus]
          Length = 753

 Score = 30.0 bits (66), Expect(2) = 0.077
 Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 3/64 (4%)
 Frame = +2

Query: 353 SVGPTSFGPPSPSPRPPGAARPIKGLPCRTC---ARPQAPGTTTGV*APLTPRMGAGGRA 523
           S G     PP+ SP P   ARP+   P R     A P  P  + G    L+P    GG  
Sbjct: 82  SAGAGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGG----LSPDSKPGGAP 137

Query: 524 VASR 535
            +SR
Sbjct: 138 SSSR 141

 Score = 28.1 bits (61), Expect(2) = 0.077
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 652 WGGCEDAALLLGGLFGARATYGGCGELGVEHVDPNPKPNP 771
           WGG E      GG+ G+ + + G G   ++   P P P P
Sbjct: 150 WGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKP 189

>ref|NP_572325.1| CG3950-PA [Drosophila melanogaster] gi|22831824|gb|AAF46171.2|
            CG3950-PA [Drosophila melanogaster]
          Length = 3166

 Score = 36.6 bits (83), Expect = 0.46
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -2

Query: 749  STCSTPSSPQPPYVALAPNKPPSSSAASSHPPQTHLRRAAADSYTHTTTR 600
            +T +T SSP P   +     PP+S+ ASS PP   L       YT+TTT+
Sbjct: 871  TTITTKSSPSPAPASPTTAAPPTSAPASSAPPDNKL-----SQYTYTTTK 915



EST assemble image


clone accession position
1 LC080d05_r AV624625 1 510
2 CM043h12_r AV389503 97 410
3 HC022h07_r AV633608 97 581
4 LC023a03_r AV620502 99 641
5 LC061g10_r AV623302 102 631
6 LC063f06_r AV623429 102 632
7 LC037d07_r AV621535 103 621
8 LC003d05_r AV619072 103 647
9 LC022d06_r AV620455 104 626
10 CM055a07_r AV390178 106 709
11 LC066d07_r AV623620 106 631
12 LC006c03_r AV619293 106 615
13 LC022h07_r AV620494 106 629
14 MXL018g01_r BP094144 108 412
15 LC027a12_r AV620804 111 527
16 CM081a09_r AV391917 111 654
17 HC089h07_r AV638720 119 518
18 CM032h10_r AV388522 119 595
19 LC015h08_r AV619988 119 627
20 LC100g06_r AV625989 119 528
21 LC062b08_r AV623328 120 637
22 HC055e12_r AV636133 129 642
23 MX236h05_r BP091319 130 528
24 CM086f11_r AV392497 151 716
25 LC052a06_r AV622619 287 793




Chlamydomonas reinhardtii
Kazusa DNA Research Institute