KCC001274A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001274A_C01 KCC001274A_c01
CCAAGTGGCCGCTGGGCTGGCCCAAGGGCGGCTACCCCGCCCCCCAGGGCCCCTACTACT
GCTCGGCCGGCGCCGGCGTGGCCATCGGCCGCGACGTGGCGGAGGTGCACTACCGCCTGT
GCCTGGCCGCGGGCGTTAACATCAGCGGCGTGAACGCCGAGGTGCTGCCCAGCCAGTGGG
AGTACCAGGTGGGCCCGTGCGAGGGCATCACCATGGGCGACCACATGTGGATGAGCCGCT
ATATCATGTACCGCGTGTGCGAGATGTTCAACGTGGAGGTCTCGTTCGACCCCAAGCCCA
TCCCCGGCGACTGGAACGGCTCCGGCGGCCACACCAACTACTCCACTAAGGCCACCCGCA
CCGCGCCCGACGGCTGGAAGGTCATCCAGGAGCACTGCGCCAAGCTGGAGGCGCGCCACG
CCGTGCACATCGCCGCCTACGGCGAGGGCAACGAGCGCCGCCTGACCGGCAAGCACGAGA
CCAGCAGCATGAGCGACTTCAGCTGGGGCGTGGCCAACCGCGGCTGCTCCATCCGCGTGG
GCCGCATGGTGCCGGTGGAGAAGTCGGGCTACTATGAGGACCGCCGGCCTGCCTCCAACC
TGGACGCCTACGTCGTCACCCGCCTCATCGTGGAGACCACCATCCTTCTGTAAGCGCAGG
AGCAGCGGCACGCAGGAGCAGCAGTGGGCGATGGTGGTGGTGGCGTTTGTGCTGGCCTGA
GCGAGGGGGGGGCCACGGAAGGGCGATCGTGGCCAAGGCGGAGGGAAGCGGCGGTCGAGC
CGCGTGGTGATCAAGGTGAGGCGTGGTGCGCGTGTTTGCATTGACATGCGGGCTCGTTTG
GCGCCGTGGCTTGAAGCTGGAGCAATTCCAACTGCATTTGGTTTGCCGGGACGTGTAGCG
GTTCAGGAAAGATGGGGTGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001274A_C01 KCC001274A_c01
         (922 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q42688|GLN1_CHLRE Glutamine synthetase, cytosolic isozyme (Gl...   462  e-129
sp|P11600|GLNA_DUNSA GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LI...   363  2e-99
gb|AAK18848.1|AC082645_18 putative glutamine synthetase [Oryza s...   308  8e-83
sp|P08281|GLN2_PEA Glutamine synthetase leaf isozyme, chloroplas...   306  2e-82
emb|CAA29057.1| gluthamine synthetase [Pisum sativum]                 306  2e-82

>sp|Q42688|GLN1_CHLRE Glutamine synthetase, cytosolic isozyme (Glutamate--ammonia ligase)
           (GS1) gi|7437922|pir||T08088 glutamate-ammonia ligase
           (EC 6.3.1.2), cytosolic - Chlamydomonas reinhardtii
           gi|1353876|gb|AAB01817.1| glutamine synthetase
           [Chlamydomonas reinhardtii]
          Length = 382

 Score =  462 bits (1189), Expect = e-129
 Identities = 216/216 (100%), Positives = 216/216 (100%)
 Frame = +3

Query: 3   KWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWE 182
           KWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWE
Sbjct: 167 KWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWE 226

Query: 183 YQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRT 362
           YQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRT
Sbjct: 227 YQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRT 286

Query: 363 APDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVG 542
           APDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVG
Sbjct: 287 APDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVG 346

Query: 543 RMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTILL 650
           RMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTILL
Sbjct: 347 RMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTILL 382

>sp|P11600|GLNA_DUNSA GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LIGASE)
           gi|68600|pir||AJDHQ glutamate-ammonia ligase (EC
           6.3.1.2) - green alga  (Dunaliella salina) (fragment)
           gi|1360726|emb|CAA33353.1| unnamed protein product
           [Dunaliella salina]
          Length = 234

 Score =  363 bits (933), Expect = 2e-99
 Identities = 169/215 (78%), Positives = 183/215 (84%)
 Frame = +3

Query: 3   KWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWE 182
           KWPLGWPKGGYPA QGPYYCS GAG +IGRD+ EVHYR CL AG+ ISGVN EVLPSQWE
Sbjct: 21  KWPLGWPKGGYPAGQGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLPSQWE 80

Query: 183 YQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRT 362
           YQVGP EGI MGD MWMSRY+MYRV E+FNVEV+FDPKPIPGDWNGSGGH N+S +   +
Sbjct: 81  YQVGPVEGIAMGDQMWMSRYLMYRVAELFNVEVTFDPKPIPGDWNGSGGHVNFSNRQPES 140

Query: 363 APDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVG 542
            P G K  +    KL  RH  HIAAYGEGNERRLTGKHETSSM+DFSWGVANRGCSIRVG
Sbjct: 141 PPAG-KQSRSSAKKLGKRHRWHIAAYGEGNERRLTGKHETSSMNDFSWGVANRGCSIRVG 199

Query: 543 RMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 647
           RMVPVEK GYYEDRRP+SNLD YVVTRL+VETT+L
Sbjct: 200 RMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234

>gb|AAK18848.1|AC082645_18 putative glutamine synthetase [Oryza sativa]
          Length = 370

 Score =  308 bits (789), Expect = 8e-83
 Identities = 135/214 (63%), Positives = 172/214 (80%)
 Frame = +3

Query: 6   WPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEY 185
           WPLGWP GGYP PQGPYYC+AGA  + GRD+ + HY+ CL AG+NISG+NAEV+P QWE+
Sbjct: 143 WPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEF 202

Query: 186 QVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRTA 365
           Q+GP  G++ GDH+W++RYI+ R+ E+  V VSFDPKPIPGDWNG+G HTNYSTK+ R +
Sbjct: 203 QIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMR-S 261

Query: 366 PDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVGR 545
             G++VI++   KL  RH  HIAAYG+GNERRLTG+HET+ +++F WGVANRG S+RVGR
Sbjct: 262 NGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINNFVWGVANRGASVRVGR 321

Query: 546 MVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 647
               +  GY+EDRRPASN+D Y+VT +I ETTIL
Sbjct: 322 DTEKDGKGYFEDRRPASNMDPYLVTAMIAETTIL 355

>sp|P08281|GLN2_PEA Glutamine synthetase leaf isozyme, chloroplast precursor
           (Glutamate--ammonia ligase) (Chloroplast GS2)
           gi|68597|pir||AJPMQ2 glutamate-ammonia ligase (EC
           6.3.1.2) delta precursor, chloroplast - garden pea
           gi|169059|gb|AAA33653.1| glutamine synthetase
           (chloroplast GS2) (EC 6.3.1.2)
          Length = 430

 Score =  306 bits (785), Expect = 2e-82
 Identities = 138/215 (64%), Positives = 166/215 (77%)
 Frame = +3

Query: 3   KWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWE 182
           KWPLGWP GGYP PQGPYYC+AGA  + GRD+++ HY+ C+ AG+NISG N EV+P QWE
Sbjct: 198 KWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWE 257

Query: 183 YQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRT 362
           YQVGP  GI  GDH+W SRYI+ R+ E   V ++ DPKPI GDWNG+G HTNYSTK+ R 
Sbjct: 258 YQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMR- 316

Query: 363 APDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVG 542
              G++VI++    L  RH +HI AYGEGNERRLTGKHET+S++DFSWGVANRGCSIRVG
Sbjct: 317 EDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVG 376

Query: 543 RMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 647
           R       GY EDRRPASN+D YVVT L+ E+T+L
Sbjct: 377 RDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLL 411

>emb|CAA29057.1| gluthamine synthetase [Pisum sativum]
          Length = 373

 Score =  306 bits (785), Expect = 2e-82
 Identities = 138/215 (64%), Positives = 166/215 (77%)
 Frame = +3

Query: 3   KWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWE 182
           KWPLGWP GGYP PQGPYYC+AGA  + GRD+++ HY+ C+ AG+NISG N EV+P QWE
Sbjct: 141 KWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWE 200

Query: 183 YQVGPCEGITMGDHMWMSRYIMYRVCEMFNVEVSFDPKPIPGDWNGSGGHTNYSTKATRT 362
           YQVGP  GI  GDH+W SRYI+ R+ E   V ++ DPKPI GDWNG+G HTNYSTK+ R 
Sbjct: 201 YQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMR- 259

Query: 363 APDGWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVG 542
              G++VI++    L  RH +HI AYGEGNERRLTGKHET+S++DFSWGVANRGCSIRVG
Sbjct: 260 EDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVG 319

Query: 543 RMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 647
           R       GY EDRRPASN+D YVVT L+ E+T+L
Sbjct: 320 RDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLL 354



EST assemble image


clone accession position
1 HC040a12_r AV634955 1 506
2 CM069e01_r AV391215 223 833
3 CM032h06_r AV388490 287 841
4 LC051e02_r AV622576 375 865
5 LC091e12_r AV625369 375 798
6 LCL098b01_r AV631679 665 1037




Chlamydomonas reinhardtii
Kazusa DNA Research Institute