KCC001269A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001269A_C01 KCC001269A_c01
cgacgcgaacaggataaggccgcggcgatgcgtcgctggctgaatgcagtgggcacttcg
tgtttctttcggcgtgttgaGAGGCGTGGTAAGGAAGCGACACAAACCTGCGGCCGAACA
CCAAACAAATTCTTTGTTCCTGTGCAGTCGGCTGGTCGACTGGGCCCTTCCCTTAAACAA
TTTTTGGTATGTGCGCTCGTGAATTACTGGCCAGTTGGACCAGGCCGCGCGCCCAGGTGT
TTGGGGGCGCGTTGGGCACGAGCGCGTGTTTGTGGTTTGTCCGTCGCGCCACGCGTTAAC
GTCTGCTGGTGTGTGCACGAGTGACACGCGTGCGGTGTGTGTGTCATAGTCTTGTGTTTT
TCTTACCCCCATTTTAAGGAAATGCAGTGCAACTGGAGTGCGCGGTTCGGCCGATTGTGG
TGTCACTGATGGTGTAGAGGCCGGTCGCGCGTTGAAAGCATGCGGTTGGGCGCCCCGGGG
TGGGTAAGTTTTTGGCTGCCACGCGGGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001269A_C01 KCC001269A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_650642.1| CG14322-PA [Drosophila melanogaster] gi|2317156...    37  0.14
ref|NP_859461.1| hypothetical protein Chr3_0290 [Leishmania majo...    35  0.42
ref|ZP_00050430.1| COG1694: Predicted pyrophosphatase [Magnetosp...    35  0.42
sp|P79745|ZP23_BRARE POU domain protein ZP-23 gi|1730453|emb|CAA...    35  0.55
ref|NP_571177.1| POU domain gene 1 [Danio rerio] gi|400833|sp|P3...    35  0.55

>ref|NP_650642.1| CG14322-PA [Drosophila melanogaster] gi|23171568|gb|AAF55448.2|
            CG14322-PA [Drosophila melanogaster]
          Length = 1534

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
 Frame = -1

Query: 483  PPRGAQPHAFNARPASTPSVTPQSAEPRTPVALHFLKMGVRKTQDYDTHTARVSLVHTPA 304
            PP         +     PS  P    P +  A     M ++KTQ      +  S+   P 
Sbjct: 852  PPTAQDSSPVTSPCQKPPSSPPSQQSPSSATAQQSSPMALQKTQSCPARQSSTSIQENPM 911

Query: 303  DVNA-WRDGQTTNTRSCPTRPQTP 235
            D +  WR   +  T+S P R  TP
Sbjct: 912  DSSGQWRGSASHKTQSSPARQTTP 935

>ref|NP_859461.1| hypothetical protein Chr3_0290 [Leishmania major]
            gi|21629325|gb|AAM69002.1|AC125735_32 hypothetical
            protein Chr3_0290 [Leishmania major]
          Length = 1660

 Score = 35.4 bits (80), Expect = 0.42
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
 Frame = -1

Query: 438  STPSVTPQSAEPRTPVALHFLKMGVRKTQDYDTHTARVSLVHTPADVNAWRDGQTTNTRS 259
            +TP+  P  A P   ++LH        ++  D+      +   P +  A   G +T++  
Sbjct: 1071 TTPAAPP--ARPPRAISLH--------SRSGDSSHPLEHIEEAPEEALAVERGFSTSSIL 1120

Query: 258  CPTRPQTPGRAAWSN---WPVIHERTYQKLFKGRAQSTSRLHRNKEFVWCSAAGLCRFLT 88
             PT P+TPGRA+ S+     V HER +         S +     K+    +AA  CR   
Sbjct: 1121 APTPPRTPGRASSSSATATTVTHERHFW------VSSLASFSHGKQSAAAAAAPSCR--- 1171

Query: 87   TPLNTPKETRSAHCIQP 37
             P      TRS   + P
Sbjct: 1172 APPTAYTPTRSPFSVAP 1188

>ref|ZP_00050430.1| COG1694: Predicted pyrophosphatase [Magnetospirillum
           magnetotacticum]
          Length = 146

 Score = 35.4 bits (80), Expect = 0.42
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = -1

Query: 291 WRDGQTTNTRSCPTRPQTPGRAAWSNWP 208
           W+ G+     S P RP+ P RA W  WP
Sbjct: 114 WKPGRKPRPASAPPRPKAPSRAFWMGWP 141

>sp|P79745|ZP23_BRARE POU domain protein ZP-23 gi|1730453|emb|CAA69215.1| POU domain
           protein [Danio rerio]
          Length = 443

 Score = 35.0 bits (79), Expect = 0.55
 Identities = 23/83 (27%), Positives = 28/83 (33%)
 Frame = -2

Query: 506 PRGSQKLTHPGAPNRMLSTRDRPLHHQ*HHNRPNRALQLHCISLKWG*EKHKTMTHTPHA 327
           P GSQ L HPG         D   HH  HH++     Q H          H   +H PH+
Sbjct: 187 PPGSQSLVHPGLVRGDTPELDHSSHHHHHHHQHQHHQQAH----------HGVNSHDPHS 236

Query: 326 CHSCTHQQTLTRGATDKPQTRAR 258
                    L   A    Q R +
Sbjct: 237 DEDTPTSDDLEHFAKQFKQRRIK 259

>ref|NP_571177.1| POU domain gene 1 [Danio rerio] gi|400833|sp|P31366|POU1_BRARE POU
           domain protein 1 (ZFPOU1) gi|103818|pir||JH0710
           transcription factor Brn-1 - zebra fish
           gi|222976|dbj|BAA02377.1| POU domain protein [Danio
           rerio]
          Length = 425

 Score = 35.0 bits (79), Expect = 0.55
 Identities = 23/83 (27%), Positives = 28/83 (33%)
 Frame = -2

Query: 506 PRGSQKLTHPGAPNRMLSTRDRPLHHQ*HHNRPNRALQLHCISLKWG*EKHKTMTHTPHA 327
           P GSQ L HPG         D   HH  HH++     Q H          H   +H PH+
Sbjct: 187 PPGSQSLVHPGLVRGDTPELDHSSHHHHHHHQHQHHQQAH----------HGVNSHDPHS 236

Query: 326 CHSCTHQQTLTRGATDKPQTRAR 258
                    L   A    Q R +
Sbjct: 237 DEDTPTSDDLEHFAKQFKQRRIK 259



EST assemble image


clone accession position
1 CM032a07_r AV388457 1 510
2 MXL018e01_r BP094123 150 471




Chlamydomonas reinhardtii
Kazusa DNA Research Institute