Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001266A_C01 KCC001266A_c01
(1433 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190331.3| light-harvesting chlorophyll a/b binding protei... 196 7e-49
pir||S14305 chlorophyll a/b-binding protein (cab-11) - tomato 191 4e-47
pir||S31863 chlorophyll a/b-binding protein type 4, photosystem ... 190 5e-47
ref|NP_084540.1| cDNA sequence BC002118 [Mus musculus] gi|128053... 190 6e-47
pir||S31864 chlorophyll a/b-binding protein type 4, photosystem ... 189 1e-46
>ref|NP_190331.3| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|115385|sp|P27521|CB24_ARATH Chlorophyll A-B
binding protein 4, chloroplast precursor (LHCI type III
CAB-4) (LHCP) gi|11277628|pir||T45707 CHLOROPHYLL A-B
BINDING PROTEIN 4 PRECURSOR homolog - Arabidopsis
thaliana gi|166646|gb|AAA32760.1| light-harvesting
chlorophyll a/b binding protein
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING
PROTEIN 4 PRECURSOR homolog [Arabidopsis thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
Length = 251
Score = 196 bits (499), Expect = 7e-49
Identities = 105/221 (47%), Positives = 139/221 (62%), Gaps = 7/221 (3%)
Frame = +2
Query: 86 STRSSRRAVVVRAAADRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSEL 265
S SS + + A + W PG+ +P+YL G LAGD G+DPLGL DP LKW+ Q+EL
Sbjct: 38 SIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAEL 97
Query: 266 QHARWAMLGVAGVLVQEIVK-------PDVYFYEAGLPQNLPEPFTNINMGGLLAWEFIL 424
+ RWAMLGVAG+L+ E+ P+ +Y+AG Q T L EFIL
Sbjct: 98 VNGRWAMLGVAGMLLPEVFTKIGIINVPE--WYDAGKEQYFASSST------LFVIEFIL 149
Query: 425 MH*VEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKGNLKELQTKEIK 604
H VE+RRWQD KN GSVN+DPIFK +P E+GYPGGIF+P F+ +E + KE+
Sbjct: 150 FHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAP--TQEAKEKELA 207
Query: 605 NGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILK 727
NGRLAM+A++ F++Q TGKGP L HLS+P+ N I++
Sbjct: 208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQ 248
>pir||S14305 chlorophyll a/b-binding protein (cab-11) - tomato
Length = 251
Score = 191 bits (484), Expect = 4e-47
Identities = 104/221 (47%), Positives = 138/221 (62%), Gaps = 5/221 (2%)
Frame = +2
Query: 86 STRSSRRAVVVRAAADRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSEL 265
ST SS + V A + W PG+ +P+YL G L GD G+DPLGL DP LKW+ Q+EL
Sbjct: 39 STSSSYNSFKVEAKKGQ--WLPGLASPDYLDGSLPGDNGFDPLGLVEDPENLKWFIQAEL 96
Query: 266 QHARWAMLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMH 430
+ RWAMLGVAG+L+ E+ + +Y+AG + T L EFIL H
Sbjct: 97 VNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEYFASSST------LFVIEFILFH 150
Query: 431 *VEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKGNLKELQTKEIKNG 610
VE+RRWQD KN GSVN+DPIFK +P + GYPGGIF+P F+ +E + KE+ NG
Sbjct: 151 YVEIRRWQDIKNPGSVNQDPIFKNYSLPPNKCGYPGGIFNPLNFAP--TEEAKEKELANG 208
Query: 611 RLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 733
RLAM+A++ FI+Q TGKGP L HLS+P+ N I++ +
Sbjct: 209 RLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 249
>pir||S31863 chlorophyll a/b-binding protein type 4, photosystem I - Scotch pine
gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of
light-harvesting complex of photosystem I [Pinus
sylvestris]
Length = 251
Score = 190 bits (483), Expect = 5e-47
Identities = 105/237 (44%), Positives = 142/237 (59%), Gaps = 7/237 (2%)
Frame = +2
Query: 44 AALMQKSALSRPACSTRSSRRAVVVRA--AADRKLWAPGVVAPEYLKGDLAGDYGWDPLG 217
+A + S++SR A R R+ + W PG+ +P YL G L GD G+DPLG
Sbjct: 20 SAFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLG 79
Query: 218 LGADPTALKWYRQSELQHARWAMLGVAGVLVQEIVKP-----DVYFYEAGLPQNLPEPFT 382
L DP +LKWY Q+EL + RWAMLGVAG+L+ E++ +Y+AG + T
Sbjct: 80 LAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSST 139
Query: 383 NINMGGLLAWEFILMH*VEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGF 562
L EFIL H VE+RRWQD K GSVN+DP+FK +P E+GYPGGIF+P F
Sbjct: 140 ------LFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNF 193
Query: 563 SKGNLKELQTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 733
S E + KE+ NGRLAM+A++ F++Q TGKGP L HLS+P+ N I++ +
Sbjct: 194 SPS--MEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
>ref|NP_084540.1| cDNA sequence BC002118 [Mus musculus] gi|12805303|gb|AAH02118.1|
CDNA sequence BC002118 [Mus musculus]
gi|33438474|emb|CAE30280.1| chlorophyll a /b binding
protein [Beta vulgaris]
Length = 252
Score = 190 bits (482), Expect = 6e-47
Identities = 104/234 (44%), Positives = 142/234 (60%), Gaps = 5/234 (2%)
Frame = +2
Query: 50 LMQKSALSRPACSTRSSRRAVVVRAAADRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGAD 229
L ++ + P+ S+ +S ++ A + W PG+ +P YL G L GD G+DPL L D
Sbjct: 30 LNKECGVRLPSTSSTNS-----LKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAED 84
Query: 230 PTALKWYRQSELQHARWAMLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINM 394
P LKW+ Q+EL + RWAMLGVAG+L+ E+ + +Y+AG + T
Sbjct: 85 PENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEYFASSST---- 140
Query: 395 GGLLAWEFILMH*VEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKGN 574
L EFIL H VE+RRWQD KN GSVN+DPIFK +P E+GYPGGIF+P F+
Sbjct: 141 --LFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP-- 196
Query: 575 LKELQTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNIG 736
E + KE+ NGRLAM+A++ FI+Q TGKGP L HLS+P+ N I++ G
Sbjct: 197 TAEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTFG 250
>pir||S31864 chlorophyll a/b-binding protein type 4, photosystem I - Scotch pine
(fragment) gi|829287|emb|CAA78901.1| Lhca4 protein,Type
4 protein of light-harvesting complex of photosystem I
[Pinus sylvestris]
Length = 244
Score = 189 bits (480), Expect = 1e-46
Identities = 98/202 (48%), Positives = 129/202 (63%), Gaps = 5/202 (2%)
Frame = +2
Query: 143 WAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV 322
W PG+ +P YL G L GD G+DPLGL DP +LKWY Q+EL + RWAMLGVAG+L+ E++
Sbjct: 48 WLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVL 107
Query: 323 KP-----DVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMH*VEVRRWQDYKNFGSVNED 487
+Y+AG + T L EFIL H VE+RRWQD K GSVN+D
Sbjct: 108 TSIGLINVPKWYDAGKVEYFASSST------LFVIEFILFHYVELRRWQDIKYPGSVNQD 161
Query: 488 PIFKGNKVPNPEMGYPGGIFDPFGFSKGNLKELQTKEIKNGRLAMIAYMAFILQAQATGK 667
P+FK +P E+GYPGGIF+P FS E + KE+ NGRLAM+A++ F++Q TGK
Sbjct: 162 PLFKQYSLPPNEVGYPGGIFNPLNFSPS--MEAKEKELANGRLAMLAFLGFVVQHNVTGK 219
Query: 668 GPLAALSAHLSNPFGNNILKNI 733
GP L HLS+P+ N I++ +
Sbjct: 220 GPFDNLLQHLSDPWHNTIIQTL 241
