KCC001263A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001263A_C01 KCC001263A_c01
CACGACTTGTCCCTTCTTTCTAAATCGTAGTATACAAGCCAACATGCTGTGCCGGACTGT
CGCGCCGACCAGGCCTGCGGGCGTTGCCCGCGGTGTCCGCTCCGTTCGCCCTTCTTCAAT
TGCGCGTGTGCCTCCCATGAAGGCCACCGCTTCCACTGCGGAGAAGAAGGCCGAGGCTGC
CGAGGTTGAGGAGGAGTTCGACGGCCCTGAGGTCAACCCCAGCACCCAGGAGGTTGCTGC
CTTCATCAACACTCTGTGCAATGACACCGAGATCGCTGAGATGCACCTGAAGATGGGCAG
CTTCGAGCTGAAGGTCAAGCGCAGCGTGTCCGGCGGTGCCCCCGTCTACGCGCACGCACC
GGTTGCTGCCCCCGCGGCGGCTGCCCCCGCCGCGACTGTGTCCGTGGATGTGCCTGCCCC
CACCGTGGAGGACACCGTGGACGAGTCGCTGGTTTACGTGAACGCGCCCAAGGTCGGCGT
GTTCCGCCGCGGCAAGTACGCGGGCGGCAAGCGCGTGGGCAAGGGCAACCTGATCGAGGT
GGGCGCGCAAGTGAAGAAGGGCCAGTGCATCGGCTACGTGGAGCAGCTGGGCACGTTCGT
GGAGGTCAAGTGCCCCATTGCCGGCGAGCTGGTCAAGGTGCACGTGGAGGACGGCAAGCC
GGTGGAGTACCAGCAGCTGGTGGCGGAGGTGGCGCCCTTCTTCGGCGGCCACATCATCGG
CGACAGCAAGTACGCGTAAGCGCTCTCACCTTACCAATCACATAAGAGCAGTTTTGCGGA
AGCCGCTGCTCAGCTGTCAGATTTGGACAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001263A_C01 KCC001263A_c01
         (810 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_188190.1| acetyl-CoA carboxylase biotin-containing subuni...   105  9e-22
ref|NP_564612.1| expressed protein [Arabidopsis thaliana] gi|175...   100  2e-20
pir||F96567 hypothetical protein F6D8.11 [imported] - Arabidopsi...   100  4e-20
ref|NP_850591.1| acetyl-CoA carboxylase biotin-containing subuni...    93  6e-18
dbj|BAB02300.1| gene_id:MSJ11.9~unknown protein [Arabidopsis tha...    93  6e-18

>ref|NP_188190.1| acetyl-CoA carboxylase biotin-containing subunit -related
           [Arabidopsis thaliana] gi|23306376|gb|AAN17415.1|
           putative acetyl-CoA carboxylase biotin-containing
           subunit [Arabidopsis thaliana]
           gi|24899719|gb|AAN65074.1| putative acetyl-CoA
           carboxylase biotin-containing subunit [Arabidopsis
           thaliana]
          Length = 263

 Score =  105 bits (262), Expect = 9e-22
 Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 9/212 (4%)
 Frame = +2

Query: 101 SVRPSSIARVPPMKATASTAEKKAEAAEVEEEFDGPEVNPSTQEVAAFINTLCNDTEIAE 280
           SV+   ++ VP  + T++T E K ++ E++      ++ P   EV A +  +C+ + IAE
Sbjct: 52  SVKAVQVSTVPTAE-TSATIEVK-DSKEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAE 109

Query: 281 MHLKMGSFELKVKRSVSGGAPVY---------AHAPVAAPAAAAPAATVSVDVPAPTVED 433
             LK+G F L V R+++  + +          ++A   +P +   A++ S+ +  P    
Sbjct: 110 FELKLGGFRLYVARNIADNSSLQPPPTPAVTASNATTESPESNGSASSTSLAISKPA-SS 168

Query: 434 TVDESLVYVNAPKVGVFRRGKYAGGKRVGKGNLIEVGAQVKKGQCIGYVEQLGTFVEVKC 613
             D+ L+ + +PKVG FRR K   GKR+      +   QVK+GQ + Y+EQLG    ++ 
Sbjct: 169 AADQGLMILQSPKVGFFRRSKTIKGKRLPSS--CKEKDQVKEGQILCYIEQLGGQFPIES 226

Query: 614 PIAGELVKVHVEDGKPVEYQQLVAEVAPFFGG 709
            + GE+VK+  EDG+PV Y   +  + P F G
Sbjct: 227 DVTGEVVKILREDGEPVGYNDALISILPSFPG 258

>ref|NP_564612.1| expressed protein [Arabidopsis thaliana] gi|17528958|gb|AAL38689.1|
           unknown protein [Arabidopsis thaliana]
           gi|21593760|gb|AAM65727.1| Is a member of the PF|00364
           Biotin-requiring enzymes family [Arabidopsis thaliana]
           gi|21689683|gb|AAM67463.1| unknown protein [Arabidopsis
           thaliana]
          Length = 274

 Score =  100 bits (250), Expect = 2e-20
 Identities = 72/235 (30%), Positives = 109/235 (45%), Gaps = 19/235 (8%)
 Frame = +2

Query: 62  APTRPAGVARGVRSVRPSSIARVPPMKATASTAEKKAEAAEVEEEFDGPEVNPSTQEVAA 241
           +P +   +   +RSV+   ++ VPP +  A    K ++  E +       + P + EV A
Sbjct: 39  SPMKYLSLRTTLRSVKAIQLSTVPPAETEAIADVKDSD--ETKSTVVNTHLMPKSSEVEA 96

Query: 242 FINTLCNDTEIAEMHLKMGSFELKVKRSV---SGGAPVYAHAPVAAPA------------ 376
            I+ + + + IAE  LK+G F L V R +   S   P      VAA A            
Sbjct: 97  LISEITDSSSIAEFELKLGGFRLYVARKLTDESSPPPQQIQPVVAASATPEGVHTNGSAT 156

Query: 377 ----AAAPAATVSVDVPAPTVEDTVDESLVYVNAPKVGVFRRGKYAGGKRVGKGNLIEVG 544
               A    ++ S D P        D+ LV + +P VG FRR K   GKR     + +  
Sbjct: 157 SSSLAITKTSSSSADRPQTLANKAADQGLVILQSPTVGYFRRSKTIKGKRTP--TICKEK 214

Query: 545 AQVKKGQCIGYVEQLGTFVEVKCPIAGELVKVHVEDGKPVEYQQLVAEVAPFFGG 709
             VK+GQ + Y+EQLG  + V+  ++GE+VK+  EDG+PV Y   +  V P F G
Sbjct: 215 DIVKEGQVLCYIEQLGGQIPVESDVSGEIVKILREDGEPVGYNDALITVLPSFPG 269

>pir||F96567 hypothetical protein F6D8.11 [imported] - Arabidopsis thaliana
           gi|5903039|gb|AAD55598.1|AC008016_8 Is a member of the
           PF|00364 Biotin-requiring enzymes family.  ESTs
           gb|F19971 and gb|F19970 come from this gene.
           [Arabidopsis thaliana]
          Length = 234

 Score =  100 bits (248), Expect = 4e-20
 Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 19/224 (8%)
 Frame = +2

Query: 95  VRSVRPSSIARVPPMKATASTAEKKAEAAEVEEEFDGPEVNPSTQEVAAFINTLCNDTEI 274
           +RSV+   ++ VPP +  A    K ++  E +       + P + EV A I+ + + + I
Sbjct: 10  LRSVKAIQLSTVPPAETEAIADVKDSD--ETKSTVVNTHLMPKSSEVEALISEITDSSSI 67

Query: 275 AEMHLKMGSFELKVKRSV---SGGAPVYAHAPVAAPA----------------AAAPAAT 397
           AE  LK+G F L V R +   S   P      VAA A                A    ++
Sbjct: 68  AEFELKLGGFRLYVARKLTDESSPPPQQIQPVVAASATPEGVHTNGSATSSSLAITKTSS 127

Query: 398 VSVDVPAPTVEDTVDESLVYVNAPKVGVFRRGKYAGGKRVGKGNLIEVGAQVKKGQCIGY 577
            S D P        D+ LV + +P VG FRR K   GKR     + +    VK+GQ + Y
Sbjct: 128 SSADRPQTLANKAADQGLVILQSPTVGYFRRSKTIKGKRTP--TICKEKDIVKEGQVLCY 185

Query: 578 VEQLGTFVEVKCPIAGELVKVHVEDGKPVEYQQLVAEVAPFFGG 709
           +EQLG  + V+  ++GE+VK+  EDG+PV Y   +  V P F G
Sbjct: 186 IEQLGGQIPVESDVSGEIVKILREDGEPVGYNDALITVLPSFPG 229

>ref|NP_850591.1| acetyl-CoA carboxylase biotin-containing subunit -related
           [Arabidopsis thaliana]
          Length = 247

 Score = 92.8 bits (229), Expect = 6e-18
 Identities = 60/194 (30%), Positives = 102/194 (51%), Gaps = 9/194 (4%)
 Frame = +2

Query: 101 SVRPSSIARVPPMKATASTAEKKAEAAEVEEEFDGPEVNPSTQEVAAFINTLCNDTEIAE 280
           SV+   ++ VP  + T++T E K ++ E++      ++ P   EV A +  +C+ + IAE
Sbjct: 52  SVKAVQVSTVPTAE-TSATIEVK-DSKEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAE 109

Query: 281 MHLKMGSFELKVKRSVSGG---------APVYAHAPVAAPAAAAPAATVSVDVPAPTVED 433
             LK+G F L V R+++           A   ++A   +P +   A++ S+ +  P    
Sbjct: 110 FELKLGGFRLYVARNIADNSSLQPPPTPAVTASNATTESPESNGSASSTSLAISKP-ASS 168

Query: 434 TVDESLVYVNAPKVGVFRRGKYAGGKRVGKGNLIEVGAQVKKGQCIGYVEQLGTFVEVKC 613
             D+ L+ + +PKVG FRR K   GKR+      +   QVK+GQ + Y+EQLG    ++ 
Sbjct: 169 AADQGLMILQSPKVGFFRRSKTIKGKRLPSS--CKEKDQVKEGQILCYIEQLGGQFPIES 226

Query: 614 PIAGELVKVHVEDG 655
            + GE+VK+  EDG
Sbjct: 227 DVTGEVVKILREDG 240

>dbj|BAB02300.1| gene_id:MSJ11.9~unknown protein [Arabidopsis thaliana]
          Length = 275

 Score = 92.8 bits (229), Expect = 6e-18
 Identities = 60/194 (30%), Positives = 102/194 (51%), Gaps = 9/194 (4%)
 Frame = +2

Query: 101 SVRPSSIARVPPMKATASTAEKKAEAAEVEEEFDGPEVNPSTQEVAAFINTLCNDTEIAE 280
           SV+   ++ VP  + T++T E K ++ E++      ++ P   EV A +  +C+ + IAE
Sbjct: 52  SVKAVQVSTVPTAE-TSATIEVK-DSKEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAE 109

Query: 281 MHLKMGSFELKVKRSVSGG---------APVYAHAPVAAPAAAAPAATVSVDVPAPTVED 433
             LK+G F L V R+++           A   ++A   +P +   A++ S+ +  P    
Sbjct: 110 FELKLGGFRLYVARNIADNSSLQPPPTPAVTASNATTESPESNGSASSTSLAISKP-ASS 168

Query: 434 TVDESLVYVNAPKVGVFRRGKYAGGKRVGKGNLIEVGAQVKKGQCIGYVEQLGTFVEVKC 613
             D+ L+ + +PKVG FRR K   GKR+      +   QVK+GQ + Y+EQLG    ++ 
Sbjct: 169 AADQGLMILQSPKVGFFRRSKTIKGKRLPSS--CKEKDQVKEGQILCYIEQLGGQFPIES 226

Query: 614 PIAGELVKVHVEDG 655
            + GE+VK+  EDG
Sbjct: 227 DVTGEVVKILREDG 240



EST assemble image


clone accession position
1 MX217a03_r BP089983 1 556
2 MX005c04_r BP086260 6 490
3 CM045c10_r AV389701 77 627
4 MX028b03_r BP087204 77 447
5 MX011f02_r BP086561 78 577
6 CM093b07_r AV393012 83 598
7 HC047g06_r AV635550 90 558
8 HC075a03_r AV637581 90 433
9 HC078b08_r AV637833 90 483
10 MX236a01_r BP091248 91 379
11 MX241f06_r BP091609 92 568
12 MX251g11_r BP092266 92 610
13 CM048e05_r AV389116 92 295
14 LC070d05_r AV623911 94 555
15 MXL046c02_r BP095710 94 554
16 MX004b04_r BP086209 102 328
17 CM031g02_r AV388322 110 628
18 CM068d10_r AV391072 132 659
19 LC068f02_r AV623785 393 902




Chlamydomonas reinhardtii
Kazusa DNA Research Institute