Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001258A_C01 KCC001258A_c01
(548 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO19365.1| unknown protein [Oryza sativa (japonica cultivar-... 51 9e-06
ref|ZP_00088609.1| COG3455: Uncharacterized protein conserved in... 50 2e-05
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 49 3e-05
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 49 3e-05
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 48 1e-04
>gb|AAO19365.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 51.2 bits (121), Expect = 9e-06
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Frame = +3
Query: 189 SAARAFKPCDSASAGPAAVCASRPAHSGRRGQSIQTEAVARPS-VYFFGF-----GGDDE 350
SAA + P S GPA G G S + + +Y GF GG
Sbjct: 158 SAAPFYSPSPFVSVGPAVGI-------GFGGSSFFFVLMGFAAFLYLAGFLSDSSGGSVL 210
Query: 351 DYEENYTVMKVQVGMFGDVKKWQKDLERLSEQFDTEDEEGLHYILQDTVTKLLRN 515
+ TV+K+QVG+ G + +QK+L++++E+ DT GL Y+L +T LLR+
Sbjct: 211 TETDKTTVLKLQVGLLGMARSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRH 265
>ref|ZP_00088609.1| COG3455: Uncharacterized protein conserved in bacteria [Azotobacter
vinelandii]
Length = 464
Score = 50.1 bits (118), Expect = 2e-05
Identities = 45/126 (35%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Frame = -3
Query: 510 GAAWSPCP-AGCSAAPPRPPCRTA------RTGAPGPSATSSRRRTCPPAPS*PCSSPHS 352
G AW P P AG AA P P R A R G PG + S RR C S
Sbjct: 82 GPAWLPYPPAGSGAARPAPGDRPAHAGRDRRAGGPGLAGASHRRFRGA------CRDSGS 135
Query: 351 PRHHRQSRRSTPKAEQRPRSGWTGRGDRCGQGGKRRPQRGPRRQSRTA*RRGRRNARSQP 172
P H R S A G G D QGG+R + P R RRGRR A +
Sbjct: 136 PAHGRAFLASHAPAGTGRLRGRRGHADLRAQGGRRVVRSEPGAAHRALRRRGRRPALADR 195
Query: 171 AWTARR 154
A RR
Sbjct: 196 AVRRRR 201
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 49.3 bits (116), Expect = 3e-05
Identities = 52/177 (29%), Positives = 71/177 (39%), Gaps = 16/177 (9%)
Frame = -3
Query: 510 GAAWSPCPAGCSAAPPRPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQS 331
G + S PA + R P R R+ + P+ SR RT P+ S +P +S
Sbjct: 461 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT----PARRRSRSRTPARRGRS 516
Query: 330 RRSTP-------KAEQRPRSGWTGRGDRCGQGGKRRP-QRGPRRQSRTA*RRGR------ 193
R TP ++ R RS + R G+ R P +R R +SRT RRGR
Sbjct: 517 RSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTP 576
Query: 192 --RNARSQPAWTARRAXXXXXTPFFWASIIFQRWIRQCERRAKSEMCVRQSERASST 28
R+ARS+ ARR TP RR++S VR+ S T
Sbjct: 577 ARRSARSRSRTPARRGRSRSRTP--------------ARRRSRSRSLVRRGRSHSRT 619
Score = 37.0 bits (84), Expect = 0.18
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = -3
Query: 450 RTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQSRRSTPK-AEQRPRSGWTGRG 274
R R+ P S SR RT P AP S SP HR+SR TP + +R RS
Sbjct: 1698 RRGRSRTPLTSRKRSRSRTSP-APWKRSRSRASPATHRRSRSITPLISRRRSRS------ 1750
Query: 273 DRCGQGGKRRPQRGPRRQSRT-A*RRGRRNARSQ-PAWTARRAXXXXXT 133
R +RR + RR+SR+ A RR +RS+ P T RR+ T
Sbjct: 1751 -RTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPT 1798
Score = 37.0 bits (84), Expect = 0.18
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 10/149 (6%)
Frame = -3
Query: 537 PRTRCTPCCGAAWSPCPAGCSAAPPRPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSP 358
PR R +P SP P S R R +P TS R R+ P P S
Sbjct: 1582 PRRRRSPSVS---SPEPTEKS----RSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSR 1634
Query: 357 HSPRHHRQ----------SRRSTPKAEQRPRSGWTGRGDRCGQGGKRRPQRGPRRQSRTA 208
R + S +ST + QR RS R R +GG R P RQ +
Sbjct: 1635 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRS--RSRVTRRRRGGSGYHSRSPTRQESSR 1692
Query: 207 *RRGRRNARSQPAWTARRAXXXXXTPFFW 121
RR RS+ T+R+ +P W
Sbjct: 1693 TSSRRRRGRSRTPLTSRKRSRSRTSPAPW 1721
Score = 36.6 bits (83), Expect = 0.23
Identities = 51/173 (29%), Positives = 65/173 (37%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 RRRRTLTLPHTHLRLCSPLTLSNPSLEDDAGPEERRXXXXXXPPCCPRRL*ARVPPPAPL 207
RR R+ T P + R S ++ A P RR PP RR +R P
Sbjct: 1746 RRSRSRTSPVSRRRSRS---VNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRT-PTRRR 1801
Query: 208 SRATLPPRAPLRSALPALPTAVAAASPSRPRPLLGLRCTSSALAVMTRTMR-RTTRS*RC 384
SR+ PP RS P S SR P+ R S V R R RT+ R
Sbjct: 1802 SRSRTPPVTRRRSR-SRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR 1860
Query: 385 RWACSAT*RSGRRTWSACPSSSTRRTRRGCTTSCRTR*PSCSATWSTSRTRPR 543
R + + RR+ S P + RR+R R R S S R+R R
Sbjct: 1861 RSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSR 1913
Score = 34.7 bits (78), Expect = 0.87
Identities = 50/183 (27%), Positives = 63/183 (34%), Gaps = 40/183 (21%)
Frame = -3
Query: 459 PPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQSRRS----------TPKA 310
P R R+ +P SR RT P HS Q RRS +P+
Sbjct: 379 PSHRAGRSRSPATKRGRSRSRT-------PTKRGHSRSRSPQWRRSRSAQRWGKSRSPQR 431
Query: 309 EQRPRS----GWT----------GRGDRCGQGGKRRPQRGPRRQSRTA*RRGRRNA---- 184
R RS GW+ R R G+ R P R +SRT RRGR +
Sbjct: 432 RGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPA 491
Query: 183 ------------RSQPAWTARRAXXXXXTPFFWASIIFQRWIRQCERRAKSEMCVRQSER 40
RS+ ARR TP S R RR++S R+S R
Sbjct: 492 RRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRS----RTRSPVRRRSRSRSQARRSGR 547
Query: 39 ASS 31
+ S
Sbjct: 548 SRS 550
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 49.3 bits (116), Expect = 3e-05
Identities = 52/177 (29%), Positives = 71/177 (39%), Gaps = 16/177 (9%)
Frame = -3
Query: 510 GAAWSPCPAGCSAAPPRPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQS 331
G + S PA + R P R R+ + P+ SR RT P+ S +P +S
Sbjct: 461 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT----PARRRSRSRTPARRGRS 516
Query: 330 RRSTP-------KAEQRPRSGWTGRGDRCGQGGKRRP-QRGPRRQSRTA*RRGR------ 193
R TP ++ R RS + R G+ R P +R R +SRT RRGR
Sbjct: 517 RSRTPARRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTP 576
Query: 192 --RNARSQPAWTARRAXXXXXTPFFWASIIFQRWIRQCERRAKSEMCVRQSERASST 28
R+ARS+ ARR TP RR++S VR+ S T
Sbjct: 577 ARRSARSRSRTPARRGRSRSRTP--------------ARRRSRSRSLVRRGRSHSRT 619
Score = 37.4 bits (85), Expect = 0.13
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = -3
Query: 450 RTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQSRRSTPK-AEQRPRSGWTGRG 274
R R+ P S SR RT P AP S SP HR+SR TP + +R RS
Sbjct: 1698 RRGRSRTPLTSRKRSRSRTSP-APWKRSRSRASPATHRRSRSRTPLISRRRSRS------ 1750
Query: 273 DRCGQGGKRRPQRGPRRQSRT-A*RRGRRNARSQ-PAWTARRAXXXXXT 133
R +RR + RR+SR+ A RR +RS+ P T RR+ T
Sbjct: 1751 -RTSPVSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPT 1798
Score = 37.0 bits (84), Expect = 0.18
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 10/149 (6%)
Frame = -3
Query: 537 PRTRCTPCCGAAWSPCPAGCSAAPPRPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSP 358
PR R +P SP P S R R +P TS R R+ P P S
Sbjct: 1582 PRRRRSPSVS---SPEPTEKS----RSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSR 1634
Query: 357 HSPRHHRQ----------SRRSTPKAEQRPRSGWTGRGDRCGQGGKRRPQRGPRRQSRTA 208
R + S +ST + QR RS R R +GG R P RQ +
Sbjct: 1635 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRS--RSRVTRRRRGGSGYHSRSPTRQESSR 1692
Query: 207 *RRGRRNARSQPAWTARRAXXXXXTPFFW 121
RR RS+ T+R+ +P W
Sbjct: 1693 TSSRRRRGRSRTPLTSRKRSRSRTSPAPW 1721
Score = 36.6 bits (83), Expect = 0.23
Identities = 51/173 (29%), Positives = 65/173 (37%), Gaps = 1/173 (0%)
Frame = +1
Query: 28 RRRRTLTLPHTHLRLCSPLTLSNPSLEDDAGPEERRXXXXXXPPCCPRRL*ARVPPPAPL 207
RR R+ T P + R S ++ A P RR PP RR +R P
Sbjct: 1746 RRSRSRTSPVSRRRSRS---VNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRT-PTRRR 1801
Query: 208 SRATLPPRAPLRSALPALPTAVAAASPSRPRPLLGLRCTSSALAVMTRTMR-RTTRS*RC 384
SR+ PP RS P S SR P+ R S V R R RT+ R
Sbjct: 1802 SRSRTPPVTRRRSR-SRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR 1860
Query: 385 RWACSAT*RSGRRTWSACPSSSTRRTRRGCTTSCRTR*PSCSATWSTSRTRPR 543
R + + RR+ S P + RR+R R R S S R+R R
Sbjct: 1861 RSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSR 1913
Score = 35.0 bits (79), Expect = 0.67
Identities = 48/174 (27%), Positives = 63/174 (35%), Gaps = 29/174 (16%)
Frame = -3
Query: 459 PPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQSRRS----------TPKA 310
P R R+ +P SR RT P HS Q RRS +P+
Sbjct: 379 PSHRAGRSRSPATKRGRSRSRT-------PTKRGHSRSRSPQWRRSRSAQRWGKSRSPQR 431
Query: 309 EQRPRS----GWT----------GRGDRCGQGGKRRPQRGPRRQSRTA*RRGRRNARS-- 178
R RS GW+ R R G+ R P R +SRT RRGR +R+
Sbjct: 432 RGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPA 491
Query: 177 ---QPAWTARRAXXXXXTPFFWASIIFQRWIRQCERRAKSEMCVRQSERASSTA 25
+ T R TP A R RR+++ VR+ R+ S A
Sbjct: 492 RRRSRSRTPARRRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSQA 542
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 47.8 bits (112), Expect = 1e-04
Identities = 44/142 (30%), Positives = 58/142 (39%), Gaps = 15/142 (10%)
Frame = -3
Query: 510 GAAWSPCPAGCSAAPPRPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQS 331
G + S PA + R P R R+ + P+ SR RT P+ S +P +S
Sbjct: 525 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRT----PTRRRSRSRTPARRGRS 580
Query: 330 RRSTP-------KAEQRPRSGWTGRGDRCGQGGKRRPQRGPRRQSRTA*RRG-------- 196
R TP ++ R RS R G+ R P R R +SRT RRG
Sbjct: 581 RSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPA 640
Query: 195 RRNARSQPAWTARRAXXXXXTP 130
RR+ RS+ ARR TP
Sbjct: 641 RRSGRSRSRTPARRGRSRSRTP 662
Score = 40.4 bits (93), Expect = 0.016
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 6/150 (4%)
Frame = -3
Query: 462 RPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQSRRSTPKAEQRPRSGWT 283
R P R + A R R+ PA S R +SR TP R RS
Sbjct: 603 RSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRS--- 659
Query: 282 GRGDRCGQGGKRRPQRGPRRQSRTA*RRGRRNA---RSQPAWTARRAXXXXXTPFFWASI 112
R R G+ R R R SRT RRGR + R + T++R +P S
Sbjct: 660 -RTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSR 718
Query: 111 IFQRWIRQC---ERRAKSEMCVRQSERASS 31
I R R +AKS + +R+S SS
Sbjct: 719 ISSRRSRSLSSPRSKAKSRLSLRRSLSGSS 748
Score = 34.3 bits (77), Expect = 1.1
Identities = 45/177 (25%), Positives = 64/177 (35%), Gaps = 15/177 (8%)
Frame = -3
Query: 510 GAAWSPCPAGCSAAPPRPPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQS 331
G + SP A + R P + + + P SR S+ R
Sbjct: 447 GRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSR------------SAQRWGRSRSPQ 494
Query: 330 RRSTPKAEQRPRSGWT----------GRGDRCGQGGKRRPQRGPRRQSRTA*RRGRRNAR 181
RR ++ QRP GW+ R R G+ R P R +SRT RRGR +R
Sbjct: 495 RRGRSRSPQRP--GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR 552
Query: 180 S-----QPAWTARRAXXXXXTPFFWASIIFQRWIRQCERRAKSEMCVRQSERASSTA 25
+ + T R TP A R RR+++ VR+ R+ S A
Sbjct: 553 TPARRRSRSRTPTRRRSRSRTP---ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPA 606
Score = 32.3 bits (72), Expect = 4.3
Identities = 25/76 (32%), Positives = 31/76 (39%), Gaps = 6/76 (7%)
Frame = -3
Query: 498 SPCPAGCSAAPPRPPCRTARTGAPGPSATS------SRRRTCPPAPS*PCSSPHSPRHHR 337
SPCP S PP R +R+G+ P A S SR + PP P +P H
Sbjct: 748 SPCPKQKSQTPP----RRSRSGSSQPKAKSRTPPRRSRSSSSPP-PKQKSKTPSRQSHSS 802
Query: 336 QSRRSTPKAEQRPRSG 289
S K+ PR G
Sbjct: 803 SSPHPKVKSGTPPRQG 818
Score = 31.6 bits (70), Expect = 7.4
Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 4/149 (2%)
Frame = -3
Query: 459 PPCRTARTGAPGPSATSSRRRTCPPAPS*PCSSPHSPRHHRQSRRSTPKAEQRPRSGWTG 280
P R R+ +P AT+ R R+ P+ HS Q RRS R W
Sbjct: 442 PSRRMGRSRSP---ATAKRGRSRSRTPT---KRGHSRSRSPQWRRS------RSAQRWGR 489
Query: 279 RGDRCGQGGKRRPQRGPRRQSRTA*RRGR----RNARSQPAWTARRAXXXXXTPFFWASI 112
+G R PQR +SR RRGR R RS A R TP A
Sbjct: 490 SRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTP---ARR 546
Query: 111 IFQRWIRQCERRAKSEMCVRQSERASSTA 25
R RR++S R+ R+ + A
Sbjct: 547 GRSRSRTPARRRSRSRTPTRRRSRSRTPA 575
