KCC001257A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001257A_C01 KCC001257A_c01
aaTTGCAACAATCTGAGCATAAATTGAGACAAAGCCCTCGACCTTGTTGGCCTGGCTCGC
AAAACCCCCGCTAGCAGCAACGTAATCCTCCTTGCTTGTCTCTTTTTCCAACCTACAAGC
TTTGCAAAGCCAGAGCTCAGCGCGCAACCGACAGGGTTACTAGGAAGCGACTCGTGATAA
ATGGCCTCCATTCGCTGCCTCGCCGCGACCAGCGGACGCTGCCCAGTGGTAGCTCCCTCC
AGGGCCTCAATCCGTGCAGTTCGCCCAATTGTGTGCGCCGCCGCAACTGTGCCGGCAGCC
GAGCGGCCACGGGTACAGGGGCAAGCGGGGGCCCCCGCTACCACCACCGCCGAGTACGCA
GTCATTCAGACGACATCAGGACAGCAGCTTGTGGAGGAGGGCAAATGGTTTGTCCTGAGC
TCTGGGTCCATCCAGGCCTCGGTAGACGACGGCCAGCTCCGCTTCCCGTGCCTGTCCGTC
AAGCGCGCTGACGGCGAGTTCGTGCGCGGCAAGGAGGCGGCGCAGTATGTGGTGGAGGCC
AAGCTGCTGGACGAGCAGGCCTTTGAAGTGGCGTCGGGCAAGACCCGCTCTATGGCGCTA
GGCAAGGTGATGGTCACCAAGATCGGGCTGGCGGAGGAGTCGCGGCGGCTGCTGGAGGAG
GCGCTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001257A_C01 KCC001257A_c01
         (667 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_741365.1| prion-like Q/N-rich domain protein PQN-75, Prio...    47  3e-04
ref|NP_741367.1| prion-like Q/N-rich domain protein PQN-75, Prio...    47  3e-04
ref|NP_741366.1| prion-like Q/N-rich domain protein PQN-75, Prio...    47  3e-04
ref|NP_176303.1| proline-rich protein family [Arabidopsis thalia...    47  3e-04
pir||A25494 hydroxyproline-rich glycoprotein - tomato (fragment)...    46  6e-04

>ref|NP_741365.1| prion-like Q/N-rich domain protein PQN-75, Prion-like Q/N-rich
           domain protein (pqn-75) [Caenorhabditis elegans]
           gi|14916375|gb|AAC48255.2|
           Prion-like-(q/n-rich)-domain-bearing protein protein 75,
           isoform a [Caenorhabditis elegans]
          Length = 524

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPP----HTAPPPCRARTR 494
           PPP A  +PPP R+  P P   P  GS PT    P +    PPP       PPP + R  
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPP-RGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 345

Query: 493 RQRA*RTG---TGSGAGRRLPRPGWTQSSGQT 407
            +R+  TG   TGS    R PR G  +SS ++
Sbjct: 346 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEES 377

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 32/95 (33%), Positives = 38/95 (39%), Gaps = 5/95 (5%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPL--QRPARPAAWPPPHTA---PPPCRART 497
           PPP    +PP A S  P P   P +GS P P     P  P   PPP  A   PPP RA +
Sbjct: 245 PPPPPKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302

Query: 496 RRQRA*RTGTGSGAGRRLPRPGWTQSSGQTICPPP 392
                   G+        P+ G +     T  PPP
Sbjct: 303 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337

 Score = 32.7 bits (73), Expect = 5.0
 Identities = 26/84 (30%), Positives = 33/84 (38%), Gaps = 1/84 (1%)
 Frame = -1

Query: 664 APPPAAA-ATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPPHTAPPPCRARTRRQ 488
           +PPPA   + PPP R    +P  +P +GS PT       P    PP   P      +   
Sbjct: 326 SPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT-----GSPPTGRPPRGGPGKSSEESSES 380

Query: 487 RA*RTGTGSGAGRRLPRPGWTQSS 416
           R    G   G  R  PR    +SS
Sbjct: 381 REGPRGGPRGGPRGGPRKSSEESS 404

>ref|NP_741367.1| prion-like Q/N-rich domain protein PQN-75, Prion-like Q/N-rich
           domain protein (50.4 kD) (pqn-75) [Caenorhabditis
           elegans] gi|22532805|gb|AAM97960.1|
           Prion-like-(q/n-rich)-domain-bearing protein protein 75,
           isoform b [Caenorhabditis elegans]
          Length = 518

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPP----HTAPPPCRARTR 494
           PPP A  +PPP R+  P P   P  GS PT    P +    PPP       PPP + R  
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPP-RGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 339

Query: 493 RQRA*RTG---TGSGAGRRLPRPGWTQSSGQT 407
            +R+  TG   TGS    R PR G  +SS ++
Sbjct: 340 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEES 371

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 32/95 (33%), Positives = 38/95 (39%), Gaps = 5/95 (5%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPL--QRPARPAAWPPPHTA---PPPCRART 497
           PPP    +PP A S  P P   P +GS P P     P  P   PPP  A   PPP RA +
Sbjct: 239 PPPPPKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296

Query: 496 RRQRA*RTGTGSGAGRRLPRPGWTQSSGQTICPPP 392
                   G+        P+ G +     T  PPP
Sbjct: 297 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331

 Score = 32.7 bits (73), Expect = 5.0
 Identities = 26/84 (30%), Positives = 33/84 (38%), Gaps = 1/84 (1%)
 Frame = -1

Query: 664 APPPAAA-ATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPPHTAPPPCRARTRRQ 488
           +PPPA   + PPP R    +P  +P +GS PT       P    PP   P      +   
Sbjct: 320 SPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT-----GSPPTGRPPRGGPGKSSEESSES 374

Query: 487 RA*RTGTGSGAGRRLPRPGWTQSS 416
           R    G   G  R  PR    +SS
Sbjct: 375 REGPRGGPRGGPRGGPRKSSEESS 398

>ref|NP_741366.1| prion-like Q/N-rich domain protein PQN-75, Prion-like Q/N-rich
           domain protein (pqn-75) [Caenorhabditis elegans]
           gi|7508879|pir||T28770 hypothetical protein W03D2.1 -
           Caenorhabditis elegans gi|22532806|gb|AAM97961.1|
           Prion-like-(q/n-rich)-domain-bearing protein protein 75,
           isoform c [Caenorhabditis elegans]
          Length = 539

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPP----HTAPPPCRARTR 494
           PPP A  +PPP R+  P P   P  GS PT    P +    PPP       PPP + R  
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPP-RGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 360

Query: 493 RQRA*RTG---TGSGAGRRLPRPGWTQSSGQT 407
            +R+  TG   TGS    R PR G  +SS ++
Sbjct: 361 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEES 392

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 32/95 (33%), Positives = 38/95 (39%), Gaps = 5/95 (5%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPL--QRPARPAAWPPPHTA---PPPCRART 497
           PPP    +PP A S  P P   P +GS P P     P  P   PPP  A   PPP RA +
Sbjct: 260 PPPPPKGSPPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317

Query: 496 RRQRA*RTGTGSGAGRRLPRPGWTQSSGQTICPPP 392
                   G+        P+ G +     T  PPP
Sbjct: 318 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352

 Score = 32.7 bits (73), Expect = 5.0
 Identities = 26/84 (30%), Positives = 33/84 (38%), Gaps = 1/84 (1%)
 Frame = -1

Query: 664 APPPAAA-ATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPPHTAPPPCRARTRRQ 488
           +PPPA   + PPP R    +P  +P +GS PT       P    PP   P      +   
Sbjct: 341 SPPPAGTGSPPPPPRQKRQAPERSPPTGSPPT-----GSPPTGRPPRGGPGKSSEESSES 395

Query: 487 RA*RTGTGSGAGRRLPRPGWTQSS 416
           R    G   G  R  PR    +SS
Sbjct: 396 REGPRGGPRGGPRGGPRKSSEESS 419

>ref|NP_176303.1| proline-rich protein family [Arabidopsis thaliana]
           gi|25404307|pir||E96636 hypothetical protein T7P1.21
           [imported] - Arabidopsis thaliana
           gi|12323348|gb|AAG51656.1|AC018908_22 hypothetical
           protein; 92104-88279 [Arabidopsis thaliana]
          Length = 907

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 46/156 (29%), Positives = 56/156 (35%), Gaps = 20/156 (12%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPPHTAPPPCRARTRRQRA 482
           PPP AA  PPP     P P   P + + P P   P    A PPP   PPP + R      
Sbjct: 528 PPPRAAVAPPPP----PPP---PGTAAAPPPPPPPPGTQAAPPP-PPPPPMQNRAPSPPP 579

Query: 481 *RTGTGSGAGRRLPRPGWTQSSGQTICPPPQAAVLMSSE*LRTRRWW*RGPP-------- 326
              G     G   P P    ++G T  PPP    + +            GPP        
Sbjct: 580 MPMGNSGSGGPPPPPPPMPLANGATPPPPPPPMAMANGA---------AGPPPPPPRMGM 630

Query: 325 ------LAPVPVAAR------LPAQLRRRTQLGELH 254
                   P P AAR         +L+R TQLG L+
Sbjct: 631 ANGAAGPPPPPGAARSLRPKKAATKLKRSTQLGNLY 666

 Score = 35.4 bits (80), Expect = 0.78
 Identities = 35/122 (28%), Positives = 40/122 (32%), Gaps = 5/122 (4%)
 Frame = -1

Query: 658 PPAAA-----ATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPPHTAPPPCRARTR 494
           PPA       A PPP       P   P  GS P P   P  P     P   PPP RA   
Sbjct: 481 PPAVMPLKHFAPPPPT-----PPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVA 535

Query: 493 RQRA*RTGTGSGAGRRLPRPGWTQSSGQTICPPPQAAVLMSSE*LRTRRWW*RGPPLAPV 314
                     + A    P P  TQ++     PPP      S   +        GPP  P 
Sbjct: 536 PPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPP 595

Query: 313 PV 308
           P+
Sbjct: 596 PM 597

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 25/68 (36%), Positives = 26/68 (37%), Gaps = 12/68 (17%)
 Frame = +2

Query: 185 PPFAA------SPRPADAAQW*LPPGPQSVQFAQLCAPPQLCRQ------PSGHGYRGKR 328
           PP AA       P P  AA    PP P   Q A    PP   +       P   G  G  
Sbjct: 529 PPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSG 588

Query: 329 GPPLPPPP 352
           GPP PPPP
Sbjct: 589 GPPPPPPP 596

>pir||A25494 hydroxyproline-rich glycoprotein - tomato (fragment)
           gi|170454|gb|AAA34170.1| cell wall hydroxyproline-rich
           glycoprotein gi|224726|prf||1111324A glycoprotein,Hyp
           rich
          Length = 93

 Score = 45.8 bits (107), Expect = 6e-04
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 664 APPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPP--HTAPPP 512
           +PPP  A+ PPP  S  P P  +P     P P+  P  P A PPP  H+ PPP
Sbjct: 38  SPPPPVASPPPPVHSPPPPPVASP-----PPPVHSPPPPVASPPPPVHSPPPP 85

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 22/52 (42%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPP--HTAPPP 512
           PPP   + PPP  S  P P  +P     P P+  P  P A PPP  H+ PPP
Sbjct: 10  PPPPKTSPPPPVHSPPPPPVASP-----PPPVHSPPPPVASPPPPVHSPPPP 56

 Score = 39.3 bits (90), Expect = 0.054
 Identities = 21/54 (38%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
 Frame = -1

Query: 667 AAPPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARPAAWPPP--HTAPPP 512
           A+PPP   + PPP  +  P P  +P     P P+  P  P   PPP  H+ PPP
Sbjct: 44  ASPPPPVHSPPPPPVASPPPPVHSP-----PPPVASPPPPVHSPPPPVHSPPPP 92

 Score = 38.1 bits (87), Expect = 0.12
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 661 PPPAAAATPPPARSW*PSPCLAP*SGSCPTPLQRPARP--AAWPPPHTAPPP 512
           PPP  A+ PPP  S  P P +A    S P P+  P  P  A+ PPP  +PPP
Sbjct: 25  PPPPVASPPPPVHS--PPPPVA----SPPPPVHSPPPPPVASPPPPVHSPPP 70



EST assemble image


clone accession position
1 LC084f12_r AV624931 1 439
2 LC026e07_r AV620764 2 567
3 LC010f02_r AV619601 3 517
4 LCL099d04_r AV631760 8 450
5 LCL068g10_r AV629909 12 532
6 LC008h02_r AV619477 12 463
7 MX238e05_r BP091421 17 287
8 LC038a08_r AV621580 19 531
9 LCL064c07_r AV629712 20 388
10 CM038b03_r AV389057 24 538
11 MX250h02_r BP092188 41 532
12 LC003d03_r AV619070 47 558
13 LC035d04_r AV621389 56 578
14 CM031a09_r AV388345 320 676




Chlamydomonas reinhardtii
Kazusa DNA Research Institute