KCC001254A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001254A_C01 KCC001254A_c01
GCTCAATTATGTTACATCCCCCGCGGACAGTGTATGGACGACTGGGGGTACCCGCCCCTC
AGGCTACCCTGCTCAACTTCCTCAGGCCTACTCAGGCCAACTTTGCCTCTCCCTGCAATT
GCTCTGCTCTGCAGCATTACGGTGCAGCCGCCAGGTAATGTCGGGCTATGGAGCTCCAAA
CCGCCGGGCACACAGGCCCATCACACGCACACCGCGTGTTCGCCTGTCCGTTCCCAATCC
ACAGTACACTGTACGAACAAACAGCCATCGTCGTATCACAACGTCAATGCCGATACAATC
CACGCCTATTTCCAGTTGCGCTGCTGATTTCTAGCCCTCCTGCATCCAGCACGCGCCCTG
CCATCTGTACGTCCCATCATCTCGCTCGCTCGCTGGCCACTCGTATTTTGCCGCTCTAAC
CTAGTTCTACAGCTGGTATCAAAACGTTAGAATAAATGCTGTGGTACACACAATCGTCGG
GCGTGCGGTGAGCCCAGCTTTATGCCCAGTGCTTTGGCCTCTCTTACGGCGCGACAATAA
TCTGTCCTAACAGGAnCAAGCACCGAGTGGTTTTCCGGGCTTTTGGTTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001254A_C01 KCC001254A_c01
         (590 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_137519.3| similar to KIAA0754 protein [Homo sapiens] [Mus...    35  0.60
gb|AAC31205.1| Medusa [Emericella nidulans]                            34  1.3
emb|CAC14243.1| hypothetical transmembrane protein L7845.11 [Lei...    33  2.3
gb|AAH43779.1| Similar to solute carrier family 16 (monocarboxyl...    32  5.0
ref|ZP_00073800.1| COG2931: RTX toxins and related Ca2+-binding ...    32  5.0

>ref|XP_137519.3| similar to KIAA0754 protein [Homo sapiens] [Mus musculus]
          Length = 545

 Score = 35.4 bits (80), Expect = 0.60
 Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +S H ++A+
Sbjct: 146 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHAE 199

 Score = 35.0 bits (79), Expect = 0.78
 Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG +   L + +PPG  AH  HT   P  S  T+H      +S H ++ +
Sbjct: 224 TEEPPGAIAHTLHTEEPPGAIAHTLHTEEPPGASAHTLHTEEPSGASAHTLHTE 277

 Score = 34.3 bits (77), Expect = 1.3
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 67  PCSTSSGLLRPTLPLPAIALLCSITVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQS 240
           P   S+  L    P P  ++    T +PPG     L + +PPG  AH  HT   P  S  
Sbjct: 318 PSGASAHTLHTEEP-PGASVHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAH 376

Query: 241 TVHCTNKQPSSYHNVNAD 294
           T+H      +S H ++ +
Sbjct: 377 TLHTEEPPGASAHTLHTE 394

 Score = 34.3 bits (77), Expect = 1.3
 Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +S H ++ +
Sbjct: 276 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPSGASAHTLHTE 329

 Score = 34.3 bits (77), Expect = 1.3
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNV--------N 288
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +S H +        +
Sbjct: 133 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGAS 192

Query: 289 ADTIHA 306
           A T+HA
Sbjct: 193 AHTLHA 198

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +S H +  +
Sbjct: 159 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHAEEPPRASAHTLQTE 212

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +S H ++ +
Sbjct: 107 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTE 160

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +S H ++ +
Sbjct: 120 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTE 173

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 67  PCSTSSGLLRPTLPLPAIALLCSITVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQS 240
           P   S+  L    P  AIA     T +PPG +   L + +PPG  AH  HT      S  
Sbjct: 214 PPGASAHTLHTEEPPGAIAHTLH-TEEPPGAIAHTLHTEEPPGASAHTLHTEEPSGASAH 272

Query: 241 TVHCTNKQPSSYHNVNAD 294
           T+H      +S H ++ +
Sbjct: 273 TLHTEEPPGASAHTLHTE 290

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (50%)
 Frame = +1

Query: 166 LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           L + +PPG  AH  HT   P  S  T+H      +S H ++A+
Sbjct: 430 LHTEEPPGAIAHTLHTEEPPGASAHTLHTEEPSGASVHTLHAE 472

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
 Frame = +1

Query: 145 QPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           +PPG +   L + +PPG  AH  HT      S  T+H      +S H ++ +
Sbjct: 5   EPPGAIAHTLHTEEPPGANAHTLHTEEPSGASAHTLHTEEPSGASAHTLHTE 56

 Score = 31.6 bits (70), Expect = 8.6
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYH 279
           T +PPG +   L + +PPG  AH  HT      S  T+H      +S H
Sbjct: 432 TEEPPGAIAHTLHTEEPPGASAHTLHTEEPSGASVHTLHAEEPSGASAH 480

 Score = 31.6 bits (70), Expect = 8.6
 Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 TVQPPGNVG--LWSSKPPGTQAHHTHTACSPVRSQSTVHCTNKQPSSYHNVNAD 294
           T +PPG     L + +PPG  AH  HT   P  S  T+H      +  H ++ +
Sbjct: 354 TEEPPGASAHTLHTEEPPGASAHTLHTEEPPGASAHTLHTEEPPGAIAHTLHTE 407

>gb|AAC31205.1| Medusa [Emericella nidulans]
          Length = 658

 Score = 34.3 bits (77), Expect = 1.3
 Identities = 25/87 (28%), Positives = 37/87 (41%), Gaps = 11/87 (12%)
 Frame = +3

Query: 159 CRAMELQTAGHTGPSHAHRVFA---CPFPIHSTLYEQTAIVVSQRQCRYNPRL------- 308
           C+  E+ +      S   RVF     P+ +H+T Y    IV   ++C  NP         
Sbjct: 81  CQLPEVTSYSPQRGSEGTRVFVQLQSPYDLHTTPYATLYIVFGSKKCECNPHFLGFRDSA 140

Query: 309 FPVALLISSPPASST-RPAICTSHHLA 386
           F  AL + +PP  ST  P++     LA
Sbjct: 141 FQYALSVDTPPFMSTGSPSLAVPLQLA 167

>emb|CAC14243.1| hypothetical transmembrane protein L7845.11 [Leishmania major]
          Length = 148

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 23/67 (34%), Positives = 27/67 (39%), Gaps = 4/67 (5%)
 Frame = +3

Query: 108 SPCNCSALQHYGAAAR*CRAMELQTAGHTGPSHAHRVFACPFPIH----STLYEQTAIVV 275
           S CNCS L  Y +AA          A   G    HR F+C  PI      T YE  A + 
Sbjct: 84  SMCNCSTLYQYQSAA--------MVAVMIGMMRVHRTFSCHRPIQIFVTETGYEMAAAMT 135

Query: 276 SQRQCRY 296
           +   C Y
Sbjct: 136 AAVVCYY 142

>gb|AAH43779.1| Similar to solute carrier family 16 (monocarboxylic acid
           transporters), member 1 [Xenopus laevis]
          Length = 490

 Score = 32.3 bits (72), Expect = 5.0
 Identities = 24/73 (32%), Positives = 34/73 (45%), Gaps = 11/73 (15%)
 Frame = +2

Query: 359 CHLYVPSSRSLAGHSYFAALT*F-YSWYQNVRINAVVHTIVGRAVSPAL--------CPV 511
           CHL VP S S  G   +A+   F + W  +V    ++  +  +  S A+        CPV
Sbjct: 341 CHLLVPLSTSYVGFCIYASFFGFAFGWLSSVLFETLMDLVGAQRFSSAVGLVTIVECCPV 400

Query: 512 LW--PLLRRDNNL 544
           L   PLL R N+L
Sbjct: 401 LLGPPLLGRLNDL 413

>ref|ZP_00073800.1| COG2931: RTX toxins and related Ca2+-binding proteins
           [Trichodesmium erythraeum IMS101]
          Length = 690

 Score = 32.3 bits (72), Expect = 5.0
 Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 137 LRCSRQVMSG-YGAPNRRAHRPITRTPRVRLSVP-NPQYTVRTNSHRRITTSMPIQSTPI 310
           +R S  + +G YG+    A R  T TP     V  N +  VR+NSHR    S  +Q   I
Sbjct: 88  MRDSGYIFTGTYGSGENIAWRGTTGTPNFTTFVEKNHENLVRSNSHRLTLMSSNLQEVGI 147

Query: 311 SSCAADF 331
           SS   +F
Sbjct: 148 SSLQGEF 154



EST assemble image


clone accession position
1 CM100d05_r AV392836 1 492
2 CM030f04_r AV397412 81 674




Chlamydomonas reinhardtii
Kazusa DNA Research Institute