KCC001252A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001252A_C01 KCC001252A_c01
cataggccctggtcctccgctttgagtttattggcacacacactccagaatgaacgccct
ttgctcgcttctcttagtgcTAGGACTACTAGGGCTCGCGAGCGGCCAGGAGTCCGGCGT
GATCAGGGGGAGAGTTCTTGTACCACCCGGCGTGAACCACTCAACGACCACGATTATCCT
GCACACCTCGACGGGCGAGGAGCTGCGCACGTACGTGAACGCGGAGGGCGCGTTCGCCTT
CCATGACGTGCCTAGCGGCGTGCAACTGCTGCAACCCTTCAACCTGCATCTGGTGTACCC
CGAGGTGCGGCTCGAGGTGAACCGCAAGGGTGTGGTGTCGCGCGCCGCGCTCAGCCACAA
CCGCAACATGGTGCTGAACCTGCCGCTGACTCTGCGGCCCGCCATGGAGGCCGCCTACTA
CGAGAAGCGCAAGCCCTTTGACGCCTGGTCCTTCATCAAGAGCCCCTACGGCATCATGAT
CGTGTTCTCGCTGTTCGCCATCGTGGTGTTCCCGCGCCTCAAGATGGACCCGGAGGACTA
CAAAGAGATGCAGGACGCCATGAAGGTGCAGGGCGGACCCGGGGCCGGCGGCGCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001252A_C01 KCC001252A_c01
         (597 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_180103.2| expressed protein [Arabidopsis thaliana] gi|283...    92  7e-18
ref|NP_194940.2| expressed protein [Arabidopsis thaliana] gi|182...    89  5e-17
pir||H84646 hypothetical protein At2g25310 [imported] - Arabidop...    76  3e-13
ref|XP_315192.1| ENSANGP00000021592 [Anopheles gambiae] gi|21298...    65  7e-10
ref|NP_611078.1| CG8397-PA [Drosophila melanogaster] gi|7303005|...    64  1e-09

>ref|NP_180103.2| expressed protein [Arabidopsis thaliana] gi|28393810|gb|AAO42314.1|
           unknown protein [Arabidopsis thaliana]
           gi|29824321|gb|AAP04121.1| unknown protein [Arabidopsis
           thaliana]
          Length = 210

 Score = 91.7 bits (226), Expect = 7e-18
 Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
 Frame = +2

Query: 98  ASGQESGVIRGRVLVPPG--VNH----STTTIILHTSTGEELRTYVNAEGAFAFHDVPSG 259
           +  ++S  I GRV +PP   + H    S   +IL+   G +  T++  +G F FH+VP+G
Sbjct: 33  SGSEDSYTITGRVKIPPSNVIGHIAKFSNVKVILN---GGQKITFLRPDGYFTFHEVPAG 89

Query: 260 VQLLQPFNLHLVYPEVRLEVN--RKGVVSRAALSHNRNMVLNLPLTLRPAMEAAYYEKRK 433
             L++   +   +  VR++V+   +G V +A L+  R  +  L   L P  E  YYE R+
Sbjct: 90  THLIEVSAMGYFFSPVRVDVSARHRGKV-QATLTETRRSLTEL--VLEPLKEEQYYEIRE 146

Query: 434 PFDAWSFIKSPYGIMIVFSLFAIVVFPRL--KMDPEDYKEMQDAMKVQGGP 580
           PF+  S +KSP G+M+ F +  + + P+L   +DPE+ K+ Q+ M+ QG P
Sbjct: 147 PFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVP 197

>ref|NP_194940.2| expressed protein [Arabidopsis thaliana] gi|18252219|gb|AAL61942.1|
           unknown protein [Arabidopsis thaliana]
           gi|21387053|gb|AAM47930.1| unknown protein [Arabidopsis
           thaliana]
          Length = 202

 Score = 89.0 bits (219), Expect = 5e-17
 Identities = 61/175 (34%), Positives = 94/175 (52%), Gaps = 11/175 (6%)
 Frame = +2

Query: 89  LGLASGQE-SGVIRGRVLVPPG--VNH----STTTIILHTSTGEELRTYVNAEGAFAFHD 247
           L ++SG E S  I GRV VP    + H    S   +IL+   G +  T++  +G F FH 
Sbjct: 24  LPISSGSEDSYTITGRVRVPASTVIGHAAKFSNIKVILN---GGQHVTFLRPDGYFTFHK 80

Query: 248 VPSGVQLLQPFNLHLVYPEVRLEVN--RKGVVSRAALSHNRNMVLNLPLTLRPAMEAAYY 421
           VP+G  L++ + L   +  VR++V+   +G V +A L+  R  +  L   L P     YY
Sbjct: 81  VPAGTHLIEVYALGYFFSPVRVDVSARHRGKV-QATLTETRRSLTEL--VLEPLRAEQYY 137

Query: 422 EKRKPFDAWSFIKSPYGIMIVFSLFAIVVFPRL--KMDPEDYKEMQDAMKVQGGP 580
           E R+PF   S +KSP G+M+ F +  + + P+L   +DPE+ K  Q+ M+ QG P
Sbjct: 138 EMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVP 192

>pir||H84646 hypothetical protein At2g25310 [imported] - Arabidopsis thaliana
           gi|4567246|gb|AAD23660.1| unknown protein [Arabidopsis
           thaliana]
          Length = 198

 Score = 76.3 bits (186), Expect = 3e-13
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 8/169 (4%)
 Frame = +2

Query: 98  ASGQESGVIRGRVLVPPG--VNH----STTTIILHTSTGEELRTYVNAEGAFAFHDVPSG 259
           +  ++S  I GRV +PP   + H    S   +IL+   G +  T++  +G F FH+VP+G
Sbjct: 33  SGSEDSYTITGRVKIPPSNVIGHIAKFSNVKVILN---GGQKITFLRPDGYFTFHEVPAG 89

Query: 260 VQLLQPFNLHLVYPEVRLEVNRKGVVSRAALSHNRNMVLNLPLTLRPAMEAAYYEKRKPF 439
             L++   +   +  VR++V+ +         H   +   L  T R   E      R+PF
Sbjct: 90  THLIEVSAMGYFFSPVRVDVSAR---------HRGKVQATLTETRRSLTELI----REPF 136

Query: 440 DAWSFIKSPYGIMIVFSLFAIVVFPRL--KMDPEDYKEMQDAMKVQGGP 580
           +  S +KSP G+M+ F +  + + P+L   +DPE+ K+ Q+ M+ QG P
Sbjct: 137 NIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQGVP 185

>ref|XP_315192.1| ENSANGP00000021592 [Anopheles gambiae] gi|21298447|gb|EAA10592.1|
           ENSANGP00000021592 [Anopheles gambiae str. PEST]
          Length = 262

 Score = 65.1 bits (157), Expect = 7e-10
 Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
 Frame = +2

Query: 194 GEELRTYVNAEGAFAFHDVPSGVQLLQPFNLHLVYPEVRLEVNRKGVVSRAALSHNR-NM 370
           G E + ++  +G+F    VPSG  +++  N    Y  VR+E+N KG      L++ + + 
Sbjct: 90  GGEYKGFLREDGSFLISSVPSGSYVVEIVNPDYFYEPVRVEINPKGKFRARKLNYVQPSQ 149

Query: 371 VLNLP--LTLRPAMEAAYYEKRKPFDAWSFIKSPYGIMIVFSLFAIVVFPRLKMDPEDYK 544
           VL LP  L L+      Y+++R+ +    F+ +P  +M++  L  +++ P++  DPE  K
Sbjct: 150 VLQLPYPLKLKALTRFRYFQQREQWKITDFLFNPMVLMMILPLGIMLILPKIMSDPETKK 209

Query: 545 EMQD 556
           EM++
Sbjct: 210 EMEN 213

>ref|NP_611078.1| CG8397-PA [Drosophila melanogaster] gi|7303005|gb|AAF58075.1|
           CG8397-PA [Drosophila melanogaster]
          Length = 245

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
 Frame = +2

Query: 167 TTIILHTSTGEELRTYVNAEGAFAFHDVPSGVQLLQPFNLHLVYPEVRLEVNRKGVVSRA 346
           T I L  + GE  + +V  +G F    VPSG  +L   +  + Y  VR+E+N KG     
Sbjct: 68  TEITLSINDGE-FKGFVREDGQFMISGVPSGSYILDVHHPDVFYEPVRVEINPKGKFRAR 126

Query: 347 ALSHNRN---MVLNLPLTLRPAMEAAYYEKRKPFDAWSFIKSPYGIMIVFSLFAIVVFPR 517
            ++  +    M +  PL ++P M   Y++ R+ +    F+ SP  +M+V  L  ++V P+
Sbjct: 127 KVNFVQPAQIMQVAYPLRVKPLMPFKYFQTREQWKITDFLFSPMVLMMVLPLLLMLVLPK 186

Query: 518 LKMDPEDYKEMQD 556
           +  DPE  KE+ +
Sbjct: 187 MINDPETKKEIDN 199



EST assemble image


clone accession position
1 LCL029b04_r AV627591 1 520
2 CM030e02_r AV397362 110 715




Chlamydomonas reinhardtii
Kazusa DNA Research Institute