KCC001249A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001249A_C01 KCC001249A_c01
caagccgtagacccggtgcctaatgcTGTTCAATCCACCTGAGTGGGCCAGCCAACCCTG
TAGAATCGCGAGCCTTGAGGTTTATTCCGGCAACCAACGGATTGTTGTTCATCCTGTGGA
CATCGAGCCCTATTACACGTTCGGACGGCAAGCTGAGTCGGTGTCAATTGCACTCGAGCA
CCATTCGTGTAGCCGCGTGCACGCTGCTCTCGTCCACCACAACGACGGTCGCATCTTCTT
AATCGACCTCCAGTCGACACAAGGCACGACTGTTGACGGCCGCCGCATCGCACCCAACAA
GCCGGTAGTGCTTAAAGACAACACGCGCATTCGCTTCGGCGAGCTAGAGTACGACTACGT
TCTTCGCTGCGAGTCTGCAGCCGAGAAGCGCTCCGCCGCCGGTGACCCCGACGCCGCCCA
CGCGCAGCCGCACAAGCGCGCCGCCATGGCCGACGCCCGCGTCCGCGCCTCCCACCTGCT
GGTCAAGCACAAGGACGTGCGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001249A_C01 KCC001249A_c01
         (504 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB36960.1| PinA [Dictyostelium discoideum]                         91  8e-18
ref|NP_666266.1| RIKEN cDNA 6330548N22 [Mus musculus] gi|1934409...    89  4e-17
ref|NP_777007.1| protein phosphatase 1, regulatory (inhibitor) s...    89  4e-17
ref|NP_054829.2| protein phosphatase 1 regulatory inhibitor subu...    89  4e-17
ref|XP_232739.1| similar to RIKEN cDNA 6330548N22 [Rattus norveg...    89  4e-17

>gb|AAB36960.1| PinA [Dictyostelium discoideum]
          Length = 243

 Score = 90.9 bits (224), Expect = 8e-18
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
 Frame = +2

Query: 38  PEWASQPCRIASLEVYSGNQRIVVHPVDIEPYYTFGRQAESVSIALEHHSCSRVHAALVH 217
           PEWAS+P     LE+      I    +  + +  FGR +E  S+ L+H S SR HAALV+
Sbjct: 1   PEWASKPISNVYLEIIKNGVNIDRVDISKDKFTVFGRSSEVASVLLDHPSVSRRHAALVY 60

Query: 218 HN-DGRIFLIDLQSTQGTTVDGRRIAPNKPVVLKDNTRIRFGELEYDYVLRCESAAEKRS 394
           H  + R +LIDLQS  GT V+  ++ P  P  +K+N   +FG     ++L+        S
Sbjct: 61  HGANNRFYLIDLQSATGTQVNDEQVKPLTPTTVKENFTFKFGSSSKHFILKGTVNTNPSS 120

Query: 395 AAGDPDAAHAQPHKRAAMADARVRASHLLVKHKDVR 502
           ++    ++ ++P          V   HLLVKH+  R
Sbjct: 121 SSSSSSSSSSEP--------KTVTCRHLLVKHQGSR 148

>ref|NP_666266.1| RIKEN cDNA 6330548N22 [Mus musculus] gi|19344095|gb|AAH25479.1|
           RIKEN cDNA 6330548N22 [Mus musculus]
          Length = 351

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +2

Query: 20  LMLFNPPEWASQPCRIASLEVYSGNQRIVVHPVDIEPYYTFGRQAESVSIALEHHSCSRV 199
           L LF+ P WA +P     L+V  G++ I    +D + YY FGR  +     ++H SCSRV
Sbjct: 11  LPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV 70

Query: 200 HAALVHHND-GRIFLIDLQSTQGTTVDGRRIAPNKPVVLKDNTRIRFGELEYDYVLRCES 376
           HAALV+H    R+FLIDL ST GT +   R+ P+KP  +  ++ + FG     Y LR + 
Sbjct: 71  HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 130

Query: 377 AAEKRSAAGD 406
                +  GD
Sbjct: 131 QTLPSAVKGD 140

>ref|NP_777007.1| protein phosphatase 1, regulatory (inhibitor) subunit 8 [Bos
           taurus] gi|9297021|sp|Q28147|PPR8_BOVIN Nuclear
           inhibitor of protein phosphatase-1 (NIPP-1) (Protein
           phosphatase 1, regulatory inhibitor subunit 8)
           gi|2136792|pir||I46033 NIPP-1, nuclear inhibitor of
           protein phosphatase-1 - bovine
           gi|1082086|emb|CAA90625.1| NIPP-1, nuclear inhibitor of
           protein phosphatase-1 [Bos taurus]
          Length = 351

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +2

Query: 20  LMLFNPPEWASQPCRIASLEVYSGNQRIVVHPVDIEPYYTFGRQAESVSIALEHHSCSRV 199
           L LF+ P WA +P     L+V  G++ I    +D + YY FGR  +     ++H SCSRV
Sbjct: 11  LPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV 70

Query: 200 HAALVHHND-GRIFLIDLQSTQGTTVDGRRIAPNKPVVLKDNTRIRFGELEYDYVLRCES 376
           HAALV+H    R+FLIDL ST GT +   R+ P+KP  +  ++ + FG     Y LR + 
Sbjct: 71  HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 130

Query: 377 AAEKRSAAGD 406
                +  GD
Sbjct: 131 QTLPSAVKGD 140

>ref|NP_054829.2| protein phosphatase 1 regulatory inhibitor subunit 8 isoform alpha;
           ard-1; protein phosphatase-1, regulatory subunit-8;
           nuclear inhibitor of protein phosphatase-1; homolog of
           E.coli RNase E; nuclear subunit of PP-1; activator of
           RNA decay [Homo sapiens] gi|14725411|ref|XP_001644.2|
           protein phosphatase 1, regulatory (inhibitor) subunit 8
           [Homo sapiens] gi|19863082|sp|Q12972|PPR8_HUMAN Nuclear
           inhibitor of protein phosphatase-1 (NIPP-1) (Protein
           phosphatase 1, regulatory inhibitor subunit 8)
           [Includes: Activator of RNA decay (ARD-1)]
           gi|4545304|gb|AAD22486.1| nuclear inhibitor of
           phosphatase-1 [Homo sapiens] gi|4581606|gb|AAD24669.1|
           nuclear inhibitor of protein phosphatase-1 alpha [Homo
           sapiens] gi|4883485|gb|AAD31541.1|AF061958_1 nuclear
           inhibitor of protein phosphatase-1 alpha [Homo sapiens]
          Length = 351

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +2

Query: 20  LMLFNPPEWASQPCRIASLEVYSGNQRIVVHPVDIEPYYTFGRQAESVSIALEHHSCSRV 199
           L LF+ P WA +P     L+V  G++ I    +D + YY FGR  +     ++H SCSRV
Sbjct: 11  LPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV 70

Query: 200 HAALVHHND-GRIFLIDLQSTQGTTVDGRRIAPNKPVVLKDNTRIRFGELEYDYVLRCES 376
           HAALV+H    R+FLIDL ST GT +   R+ P+KP  +  ++ + FG     Y LR + 
Sbjct: 71  HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 130

Query: 377 AAEKRSAAGD 406
                +  GD
Sbjct: 131 QTLPSAVKGD 140

>ref|XP_232739.1| similar to RIKEN cDNA 6330548N22 [Rattus norvegicus]
          Length = 351

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +2

Query: 20  LMLFNPPEWASQPCRIASLEVYSGNQRIVVHPVDIEPYYTFGRQAESVSIALEHHSCSRV 199
           L LF+ P WA +P     L+V  G++ I    +D + YY FGR  +     ++H SCSRV
Sbjct: 11  LPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV 70

Query: 200 HAALVHHND-GRIFLIDLQSTQGTTVDGRRIAPNKPVVLKDNTRIRFGELEYDYVLRCES 376
           HAALV+H    R+FLIDL ST GT +   R+ P+KP  +  ++ + FG     Y LR + 
Sbjct: 71  HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 130

Query: 377 AAEKRSAAGD 406
                +  GD
Sbjct: 131 QTLPSAVKGD 140



EST assemble image


clone accession position
1 LC066h04_r AV623659 1 506
2 CM030d07_r AV397428 7 579
3 HC059a12_r AV636407 13 155
4 HC082b09_r AV638118 18 454
5 LC091b05_r AV625338 27 192




Chlamydomonas reinhardtii
Kazusa DNA Research Institute