KCC001247A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001247A_C01 KCC001247A_c01
gtcacgcccctctgcatttattaaaaccactactctatacaagtttgCAGCGACAACTTT
ACAAGCGCACGCGTTTCGAAAGTTTGACCAAGGCTCTACGTTCGCGGTCTCGGCACTCGG
AGCACCTGAGTCAACGATGGGCTTGAATATGCAGTATAAGGGTCTCAGCTACACCACAGC
TGTCATCGCCATCTTGGGGGTGGCGCCGTGGGGAGTGTTCTTGGGCGGCGTGGCCAAGGC
AACGACTGAGCTTGATGGCAAGCTCATCAAGCAGGCCGAGGTCATGCTTGAGTGGTACAT
CGTGGCTGCCCAGATCGTGTACATGGTGGCCATCGCCGCCGTTGGCTTCGCTGGTCAGCT
CCGCCGCTGCGACTCGCTTTTCAACAATTTCCTGGCGGTGAACACATTCCTGCTGATCTA
TCGTGCCACGATTCGCATCAACCAGGCCCAGTCCCTCAAGGACGACAACATCTACGTGTC
AGACTGGCTGCACCTGGCATACGTCCGTGCACTTGCTGCCGGGCAGGTTTCCTGCGCCGC
TTGGAACCTATTCCTAGCTATCTTCCTGGGCCTTGCTGGCTCCACGCCTGAGCCCACTAA
TTAAGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001247A_C01 KCC001247A_c01
         (608 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB32536.1| alpha-amylase [Drosophila melanogaster]                39  0.044
ref|NP_294953.1| hypothetical protein [Deinococcus radiodurans] ...    36  0.38
gb|AAK93556.1| SD08128p [Drosophila melanogaster]                      36  0.38
ref|NP_649254.2| CG11399-PB [Drosophila melanogaster] gi|7296349...    36  0.38
gb|AAL25435.1| LD30158p [Drosophila melanogaster]                      36  0.38

>dbj|BAB32536.1| alpha-amylase [Drosophila melanogaster]
          Length = 195

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 30/86 (34%), Positives = 40/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 219 SWAAWPRQRLSLMA-SSSSRPRSCLSGTSWLPRSCTWWPSPPLASLVSSAAATRFSTISW 395
           SW   P  R S  A SS++ P  C    +W   S TW P+    +L ++  A     I  
Sbjct: 87  SWRPAPETRSSSPAWSSAATPSECAPTWTW--SSTTWPPTEAPTALAAAPPAPAARAIPE 144

Query: 396 R*THSC*SIVPRFASTRPSPSRTTTS 473
             T       PR+ STRP+PS TTT+
Sbjct: 145 CPT-------PRWTSTRPAPSATTTT 163

>ref|NP_294953.1| hypothetical protein [Deinococcus radiodurans]
           gi|7472709|pir||F75420 hypothetical protein -
           Deinococcus radiodurans (strain R1)
           gi|6458982|gb|AAF10810.1|AE001971_10 hypothetical
           protein [Deinococcus radiodurans]
          Length = 319

 Score = 36.2 bits (82), Expect = 0.38
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
 Frame = +3

Query: 219 SWAAWPRQRLSLMASSSSRPRSCLSGTSWLPRSCTWW---PSPPLASLVSSAAATRFSTI 389
           S   WP    + +    S PRS  +GT W    CTW    P+ P A+   ++ +   S  
Sbjct: 219 STRCWPAASANSVPKPPSSPRSVRAGTRW--GCCTWTPGAPAAPRATTTRNSCSHSPSRR 276

Query: 390 SWR*T------HSC*SIVPRFASTRPSPSRTTTSTCQTGC 491
            WR T          S  P     RP+P      TC T C
Sbjct: 277 VWRLTTPGSTPSRPASARPPRRCARPAPCWRAACTCPTRC 316

>gb|AAK93556.1| SD08128p [Drosophila melanogaster]
          Length = 920

 Score = 36.2 bits (82), Expect = 0.38
 Identities = 37/139 (26%), Positives = 56/139 (39%), Gaps = 8/139 (5%)
 Frame = +3

Query: 201  WRRGECSWAAWPRQRLSLMASSSS--------RPRSCLSGTSWLPRSCTWWPSPPLASLV 356
            W +    +A W    + + A   +        R R+  +  +    S    PS P  S  
Sbjct: 712  WLQNSAGYARWGPNEIRVEALREAFRPQRDRERERAAAAAAAAGVTSSQQSPSTP-PSAA 770

Query: 357  SSAAATRFSTISWR*THSC*SIVPRFASTRPSPSRTTTSTCQTGCTWHTSVHLLPGRFPA 536
            S+A  T   TIS   ++S  S      ST  SPS TTTS+  +  + HT     P +FP 
Sbjct: 771  STAPTTNSCTISGVNSNS--SSTATTTSTSSSPSLTTTSSSMSPLSPHTPTGNPPPQFPM 828

Query: 537  PLGTYS*LSSWALLAPRLS 593
             +   S  S+    +P +S
Sbjct: 829  TISNTSSSSNLVAASPTMS 847

>ref|NP_649254.2| CG11399-PB [Drosophila melanogaster] gi|7296349|gb|AAF51638.1|
            CG11399-PB [Drosophila melanogaster]
          Length = 920

 Score = 36.2 bits (82), Expect = 0.38
 Identities = 37/139 (26%), Positives = 56/139 (39%), Gaps = 8/139 (5%)
 Frame = +3

Query: 201  WRRGECSWAAWPRQRLSLMASSSS--------RPRSCLSGTSWLPRSCTWWPSPPLASLV 356
            W +    +A W    + + A   +        R R+  +  +    S    PS P  S  
Sbjct: 712  WLQNSAGYARWGPNEIRVEALREAFRPQRDRERERAAAAAAAAGVTSSQQSPSTP-PSAA 770

Query: 357  SSAAATRFSTISWR*THSC*SIVPRFASTRPSPSRTTTSTCQTGCTWHTSVHLLPGRFPA 536
            S+A  T   TIS   ++S  S      ST  SPS TTTS+  +  + HT     P +FP 
Sbjct: 771  STAPTTNSCTISGVNSNS--SSTATTTSTSSSPSLTTTSSSMSPLSPHTPTGNPPPQFPM 828

Query: 537  PLGTYS*LSSWALLAPRLS 593
             +   S  S+    +P +S
Sbjct: 829  TISNTSSSSNLVAASPTMS 847

>gb|AAL25435.1| LD30158p [Drosophila melanogaster]
          Length = 243

 Score = 36.2 bits (82), Expect = 0.38
 Identities = 37/139 (26%), Positives = 56/139 (39%), Gaps = 8/139 (5%)
 Frame = +3

Query: 201 WRRGECSWAAWPRQRLSLMASSSS--------RPRSCLSGTSWLPRSCTWWPSPPLASLV 356
           W +    +A W    + + A   +        R R+  +  +    S    PS P  S  
Sbjct: 35  WLQNSAGYARWGPNEIRVEALREAFRPQRDRERERAAAAAAAAGVTSSQQSPSTP-PSAA 93

Query: 357 SSAAATRFSTISWR*THSC*SIVPRFASTRPSPSRTTTSTCQTGCTWHTSVHLLPGRFPA 536
           S+A  T   TIS   ++S  S      ST  SPS TTTS+  +  + HT     P +FP 
Sbjct: 94  STAPTTNSCTISGVNSNS--SSTATTTSTSSSPSLTTTSSSMSPLSPHTPTGNPPPQFPM 151

Query: 537 PLGTYS*LSSWALLAPRLS 593
            +   S  S+    +P +S
Sbjct: 152 TISNTSSSSNLVAASPTMS 170



EST assemble image


clone accession position
1 CM030c01_r AV397381 1 481
2 HC078f11_r AV637871 12 530
3 MX238e08_r BP091423 59 499
4 CM047f09_r AV388585 59 308
5 CM053d01_r AV389930 73 625




Chlamydomonas reinhardtii
Kazusa DNA Research Institute