KCC001243A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001243A_C01 KCC001243A_c01
gcacgagaagcaaaacaCGGAAACCTACTTCGCAGACCCTTACGACGCGTACACAGAACT
TCGAAGCAAACGTCGTCCATGCCAAGGAACTGAAGGGGCCTCCAAGACTAGTTAGGCATG
GCTTTTATCACTGAGATTGCCAACGAGGCGCAGTGGAAGACGGAGGTGCTCGAAACGCCG
GGGACGCTTCAAGTTGTGGAGGTGTTCCAGTCCTGGTGCGGGCCATGCAAAGCGGTGCAA
TCTACGTTTAAGAAGCTTTACTTCGACCTGAACGACCGGCCACTGAAGTTCTACTCGGTG
TCGTCGGAACGGCTGTCGTCCCTGAAGGAGTATGTGGGCAAGTGCAAGCCCATTTTCCTT
TTCTTCAAGGATGGCAAGCAGGTGGAGAAGATTGAGGGCGTGAAGGCGCCGCAACTCAAC
AGGATCGTGACGGAGTTGTCGGGGAAAAACCCGCCCCCGGCGGCCCCGGCTGCGGCCCCG
GCGGCTCCAGCAGCGGAGGCATCGTAnGCGGGACGCGTGGCTAGCAGCTTGCGTGCGGCA
TGTGGCTCTATGAnGGTGGACGGTGACGGCTATGGGCGGCGAGCAGCATTGCTGGAGCAG
AATGCGCGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001243A_C01 KCC001243A_c01
         (610 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39591|DYL4_CHLRE DYNEIN 14 KD LIGHT CHAIN, FLAGELLAR OUTER A...   262  3e-69
gb|AAF20909.2|AF202051_1 NM23-H8 [Homo sapiens] gi|22671319|gb|A...    86  3e-16
ref|NP_057700.2| NM23-H8; sperm-specific thioredoxin 2 [Homo sap...    86  3e-16
ref|NP_853622.1| thioredoxin domain containing 3 (spermatozoa) [...    85  7e-16
ref|XP_344602.1| similar to Thioredoxin domain containing 3 (spe...    85  9e-16

>sp|Q39591|DYL4_CHLRE DYNEIN 14 KD LIGHT CHAIN, FLAGELLAR OUTER ARM
           gi|7430850|pir||T08084 dynein light chain, 14K, outer
           arm - Chlamydomonas reinhardtii
           gi|1163186|gb|AAB03681.1| Mr14,000 outer arm dynein
           light chain
          Length = 129

 Score =  262 bits (669), Expect = 3e-69
 Identities = 129/129 (100%), Positives = 129/129 (100%)
 Frame = +1

Query: 118 MAFITEIANEAQWKTEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLNDRPLKFYS 297
           MAFITEIANEAQWKTEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLNDRPLKFYS
Sbjct: 1   MAFITEIANEAQWKTEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLNDRPLKFYS 60

Query: 298 VSSERLSSLKEYVGKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTELSGKNPPPAAPAAA 477
           VSSERLSSLKEYVGKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTELSGKNPPPAAPAAA
Sbjct: 61  VSSERLSSLKEYVGKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTELSGKNPPPAAPAAA 120

Query: 478 PAAPAAEAS 504
           PAAPAAEAS
Sbjct: 121 PAAPAAEAS 129

>gb|AAF20909.2|AF202051_1 NM23-H8 [Homo sapiens] gi|22671319|gb|AAN04258.1|AF305596_1
           sperm-specific thioredoxin 2 [Homo sapiens]
          Length = 588

 Score = 86.3 bits (212), Expect = 3e-16
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
 Frame = +1

Query: 130 TEIANEAQWKTEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLN-DRPLKFYSVSS 306
           T I N++ W  E+L+  G L V++V+Q+WCGPC+A+Q  F+KL  +LN D  L F    +
Sbjct: 12  TVINNQSLWD-EMLQNKG-LTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEILHFAVAEA 69

Query: 307 ERLSSLKEYVGKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTEL 438
           + + +L+ +  KC+P+FLF  +GK +EKI+G  AP +N+ V  L
Sbjct: 70  DNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINL 113

>ref|NP_057700.2| NM23-H8; sperm-specific thioredoxin 2 [Homo sapiens]
           gi|22477642|gb|AAH36816.1| NM23-H8 [Homo sapiens]
          Length = 588

 Score = 86.3 bits (212), Expect = 3e-16
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
 Frame = +1

Query: 130 TEIANEAQWKTEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLN-DRPLKFYSVSS 306
           T I N++ W  E+L+  G L V++V+Q+WCGPC+A+Q  F+KL  +LN D  L F    +
Sbjct: 12  TVINNQSLWD-EMLQNKG-LTVIDVYQAWCGPCRAMQPLFRKLKNELNEDEILHFAVAEA 69

Query: 307 ERLSSLKEYVGKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTEL 438
           + + +L+ +  KC+P+FLF  +GK +EKI+G  AP +N+ V  L
Sbjct: 70  DNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINL 113

>ref|NP_853622.1| thioredoxin domain containing 3 (spermatozoa) [Mus musculus]
           gi|30481657|gb|AAH52356.1| Thioredoxin domain containing
           3 (spermatozoa) [Mus musculus]
          Length = 470

 Score = 85.1 bits (209), Expect = 7e-16
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
 Frame = +1

Query: 127 ITEIANEAQWKTEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLN-DRPLKFYSVS 303
           +  + N      E+L   G L V++V+Q+WCGPCKAVQS F+KL  +LN D  L F    
Sbjct: 10  LQSVVNSQNLWDEMLLNKG-LTVIDVYQAWCGPCKAVQSLFRKLKNELNEDEILHFVVAE 68

Query: 304 SERLSSLKEYVGKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTEL 438
           ++ + +L+ +  KC+P+FLF  +GK + KI+G  AP +NR V  L
Sbjct: 69  ADNIVTLQPFRDKCEPVFLFSLNGKIIAKIQGANAPLINRKVITL 113

>ref|XP_344602.1| similar to Thioredoxin domain containing 3 (spermatozoa) [Rattus
           norvegicus]
          Length = 567

 Score = 84.7 bits (208), Expect = 9e-16
 Identities = 42/103 (40%), Positives = 66/103 (63%), Gaps = 1/103 (0%)
 Frame = +1

Query: 160 TEVLETPGTLQVVEVFQSWCGPCKAVQSTFKKLYFDLN-DRPLKFYSVSSERLSSLKEYV 336
           T + E+   ++V++V+Q+WCGPCKAVQ+ F+KL  +LN D  L F    ++ + +L+ + 
Sbjct: 6   TGLRESLAPMEVIDVYQAWCGPCKAVQALFRKLKNELNEDELLHFVVAEADSIVTLQPFR 65

Query: 337 GKCKPIFLFFKDGKQVEKIEGVKAPQLNRIVTELSGKNPPPAA 465
            KC+P+FLF  +GK + KI+G  AP +NR V  L  +    AA
Sbjct: 66  DKCEPVFLFSLNGKIIAKIQGANAPLINRKVIALIDEEKKIAA 108



EST assemble image


clone accession position
1 CM037g09_r AV388869 1 500
2 CM029e01_r AV389324 18 631
3 CM036g06_r AV388826 18 348




Chlamydomonas reinhardtii
Kazusa DNA Research Institute