KCC001239A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001239A_C01 KCC001239A_c01
gcacgaggtctcgagttttttttttttttttttGTGACAATCCTCTTGTTACACCGCGGT
ATACTCCCGAGGTGACCCCAGCCAAACGACCGCTCCTGTATGCAAGCAGGAATCGGGGCC
GCCGCCCGCCTCCGCACTCCGCAGTCCCCCCCCCGCATACGTCACCTCATTGCCATCCTA
CGCACAAACCACCTCACCTCACACACCTGCTGCTCACAATAATGGCAAGCCCAAGGCCTC
CGCACGCGCCCTAGAGACCAGCGCGTCGTCTGTGTCTGTGTCTGCCGACGTGTCGACACC
CGCCAAAGACCTACAAGCCACAGCCCCTCTCACAACCTCTACCACAGCACAGCCTCTGCT
ACAGTCTCCGCAATGACCCCACCTCTTCCTTCAACTTGCTATGCGCGCACACGCCCGGTG
AAGAAAGCGACAATTGGAGCCCAAGCCCCATCCAACTCAAAACGATGCAACTCATCACGC
CGACTCAATTCTCGACGCCTGCTCCCGCTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001239A_C01 KCC001239A_c01
         (511 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|em...    53  2e-06
sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyprolin...    52  3e-06
ref|NP_642428.1| ribonuclease E [Xanthomonas axonopodis pv. citr...    49  4e-05
pir||S71558 probable cell wall-plasma membrane linker protein PR...    49  4e-05
emb|CAE02916.1| OSJNBb0108J11.8 [Oryza sativa (japonica cultivar...    48  8e-05

>pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|emb|CAA43583.1|
           hydroxyproline-rich glycoprotein [Oryza sativa]
          Length = 369

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 46/169 (27%), Positives = 60/169 (35%), Gaps = 14/169 (8%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPP-----------PHSAVPP---PHTSPHCHP 179
           P  TP   P  TP   P  Y  + +   PP           P+   PP   P   P+  P
Sbjct: 170 PKPTP---PPYTPTPAPPTYKPQPKPNPPPTYKPAPKPTPTPYQPAPPTYKPQPKPNPPP 226

Query: 180 THKPPHLTHLLLTIMASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLPQHSLC 359
           T+KP    +   T   +P+P   P +PA       P   +PP TYKPQP   P P     
Sbjct: 227 TYKPQPKPNPPPTYKPAPKPTPTPYKPAPPTYKPQPK-PNPPPTYKPQPKPTPTPYTPPT 285

Query: 360 YSLRNDPTSSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPTQFSTPAP 506
           Y  +  PT +               + P P    T     P    TP+P
Sbjct: 286 YKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSP 334

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 32/99 (32%), Positives = 42/99 (42%)
 Frame = +3

Query: 54  PRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTIMASP 233
           P Y P+  P   P          +P P    PPP+T     PT+KP    +   T   +P
Sbjct: 144 PMYKPQPKPTPAPYTPTPTPPTYKPQP-KPTPPPYTPTPAPPTYKPQPKPNPPPTYKPAP 202

Query: 234 RPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLPQH 350
           +P   P +PA       P   +PP TYKPQP   P P +
Sbjct: 203 KPTPTPYQPAPPTYKPQPK-PNPPPTYKPQPKPNPPPTY 240

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 50/166 (30%), Positives = 61/166 (36%), Gaps = 17/166 (10%)
 Frame = +3

Query: 60  YTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCH--PTHKPPHLTHLLLTIMASP 233
           YTP  TP K P     +      PPH   P P   P  H  P + PP  T    T   +P
Sbjct: 31  YTPTPTPVK-PAPKPEKPPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTP 89

Query: 234 RPPHAP*RPARRLCLCLPT------CRHPPK----TYKPQPLSQPLPQHSL----CYSLR 371
           +P   P  P        PT         PPK    TYKPQP   P P         Y  +
Sbjct: 90  KPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPMYKPQ 149

Query: 372 NDPTSSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPTQFS-TPAP 506
             PT +      +TP       +P+P   K     TP  ++ TPAP
Sbjct: 150 PKPTPA-----PYTP-------TPTPPTYKPQPKPTPPPYTPTPAP 183

 Score = 39.3 bits (90), Expect = 0.029
 Identities = 30/97 (30%), Positives = 33/97 (33%)
 Frame = +3

Query: 54  PRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTIMASP 233
           P YTP   P   P  Y         P     PPP+T     P H P   T+        P
Sbjct: 71  PAYTPP-KPTPTPPTYT--------PTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKP 121

Query: 234 RPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLP 344
            PP    +P        PT    P  YKPQP   P P
Sbjct: 122 TPPTYKPQPKPTPAPYTPT--PTPPMYKPQPKPTPAP 156

 Score = 38.9 bits (89), Expect = 0.038
 Identities = 36/116 (31%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
 Frame = +3

Query: 42  PLVTPR------------YTPEVTPAK-RPLLYASRNRGRRPPPHSAVP-PPHTSPHCHP 179
           P  TP+            YTP  TP K  P  Y  + +   P P++  P PP   P   P
Sbjct: 94  PPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPK-PTPAPYTPTPTPPMYKPQPKP 152

Query: 180 THKPPHLTHLLLTIMASPRPPHAP*RPARRLCLCLPTCR-HPPKTYKPQPLSQPLP 344
           T  P   T    T    P+P   P  P        P  + +PP TYKP P   P P
Sbjct: 153 TPAPYTPTPTPPTYKPQPKPTPPPYTPTPAPPTYKPQPKPNPPPTYKPAPKPTPTP 208

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 26/95 (27%), Positives = 32/95 (33%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTI 221
           P   P Y P+  P   P  Y    +   PP +   P P  +P   P    P  T    T 
Sbjct: 280 PYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYK--PQPKPTPTPTPYKPQPKPTPSPYTP 337

Query: 222 MASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQP 326
             +P PP     P        P    PP +Y P P
Sbjct: 338 KPTPTPPTYTPTPT-------PPYHKPPPSYTPGP 365

>sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyproline-rich glycoprotein)
           gi|82169|pir||S06733 hydroxyproline-rich glycoprotein
           precursor - common tobacco gi|19867|emb|CAA32090.1|
           unnamed protein product [Nicotiana tabacum]
          Length = 620

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 49/162 (30%), Positives = 64/162 (39%), Gaps = 11/162 (6%)
 Frame = +3

Query: 54  PRYTP----EVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTI 221
           P Y+P     V P   P    SR    +PP H   PP H   H  PTH+P  L HL  + 
Sbjct: 202 PTYSPPPPTHVQPTPSP---PSRGHQPQPPTHRHAPPTHR--HAPPTHQPSPLRHLPPSP 256

Query: 222 MASPRPP-HAP*RPA-RRLCLCLPTCRHPPKTYKPQPLSQPLPQHSLCYSLRNDPTSSFN 395
              P+PP ++P  PA  +     PT   PP TY P P S         YS    PT +  
Sbjct: 257 RRQPQPPTYSPPPPAYAQSPQPSPTYSPPPPTYSPPPPSPIYSPPPPAYSPSPPPTPTPT 316

Query: 396 LLCAHTPGEESDNWSPSP---IQLKTMQLITPTQ--FSTPAP 506
                        +SP P   + L +  + +P    +S P P
Sbjct: 317 FSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPVYSPPPP 358

 Score = 41.2 bits (95), Expect = 0.008
 Identities = 46/157 (29%), Positives = 60/157 (37%), Gaps = 2/157 (1%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTI 221
           P  T   +P   PA  P L A        PP  + PPP  SP      +PP L       
Sbjct: 385 PPPTYEQSPPPPPAYSPPLPA--------PPTYSPPPPTYSPPPPTYAQPPPLP----PT 432

Query: 222 MASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQP--LSQPLPQHSLCYSLRNDPTSSFN 395
            + P P ++P  P        PT   PP TY P P   +QP P           P +   
Sbjct: 433 YSPPPPAYSPPPP--------PTYSPPPPTYSPPPPAYAQPPP----------PPPTYSP 474

Query: 396 LLCAHTPGEESDNWSPSPIQLKTMQLITPTQFSTPAP 506
              A++P   S  +SP P Q++ +    P  FS P P
Sbjct: 475 PPPAYSPPPPSPIYSPPPPQVQPL----PPTFSPPPP 507

 Score = 41.2 bits (95), Expect = 0.008
 Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAV---PPPHTSPHCHPTHKPPHLTHLL 212
           P  TP ++P       P  Y+       P P S +   PPP  SP   P++ PP  T+L 
Sbjct: 311 PTPTPTFSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLP 370

Query: 213 LTIMASPRPP-----------HAP*RPARRLCL-CLPTCRHPPKTYKPQP--LSQPLP 344
               +SP PP             P  PA    L   PT   PP TY P P   +QP P
Sbjct: 371 PPPPSSPPPPSFSPPPPTYEQSPPPPPAYSPPLPAPPTYSPPPPTYSPPPPTYAQPPP 428

 Score = 38.9 bits (89), Expect = 0.038
 Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
 Frame = +3

Query: 126 PPPHSAVPPPHTSPHCHPTH--KPPHLTHLLLTIMASPRPPHA--------P*RPARRLC 275
           PPP    PPP   P   P+H  +PP  +H          PP          P  P+R   
Sbjct: 118 PPPSYGAPPPSHGPGHLPSHGQRPPSPSHGHAPPSGGHTPPRGQHPPSHRRPSPPSRHGH 177

Query: 276 LCLPTCRHPPKT--YKPQPLSQPLPQHSLCYSLRNDPTSS 389
              PT   PP T  Y P P  QP P +S        PT S
Sbjct: 178 PPPPTYAQPPPTPIYSPSPQVQPPPTYSPPPPTHVQPTPS 217

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 45/178 (25%), Positives = 59/178 (32%), Gaps = 25/178 (14%)
 Frame = +3

Query: 48  VTPRYTPEVTPAKRPLLYASRNRGRR----PPPHSAVPP-------------------PH 158
           ++P   P  TP  R  + + R+   R    PP H  +PP                   P 
Sbjct: 49  LSPPSAPTTTPPSRGHVPSPRHAPPRHAYPPPSHGHLPPSVGGPPPHRGHLPPSRGFNPP 108

Query: 159 TSPHCHPTHKPPHLTHLLLTIMASPRPPHAP*R-PARRLCLCLPTCRH-PPKTYKPQPLS 332
            SP   P+H PP           +P P H P   P+       P+  H PP      P  
Sbjct: 109 PSPVISPSHPPPS--------YGAPPPSHGPGHLPSHGQRPPSPSHGHAPPSGGHTPPRG 160

Query: 333 QPLPQHSLCYSLRNDPTSSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPTQFSTPAP 506
           Q  P H      R  P S       H P        P+PI   + Q+  P  +S P P
Sbjct: 161 QHPPSHR-----RPSPPSRH----GHPPPPTYAQPPPTPIYSPSPQVQPPPTYSPPPP 209

 Score = 35.8 bits (81), Expect = 0.32
 Identities = 33/119 (27%), Positives = 42/119 (34%), Gaps = 15/119 (12%)
 Frame = +3

Query: 39  NPLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLT 218
           +P   P Y+P   P   P   A       PP +S  PP ++ P   P + PP        
Sbjct: 441 SPPPPPTYSPP-PPTYSPPPPAYAQPPPPPPTYSPPPPAYSPPPPSPIYSPP-------P 492

Query: 219 IMASPRPPHAP*RPARRLCLCLPTCRHP------------PKTYKPQP---LSQPLPQH 350
               P PP     P RR+ L  P  R P            P T+ P P   +  P P H
Sbjct: 493 PQVQPLPPTFSPPPPRRIHLPPPPHRQPRPPTPTYGQPPSPPTFSPPPPRQIHSPPPPH 551

 Score = 34.7 bits (78), Expect = 0.71
 Identities = 29/82 (35%), Positives = 33/82 (39%), Gaps = 6/82 (7%)
 Frame = +3

Query: 117 GRRPPPHSAVPPPHT---SPHCHPTHKPPHLTHLLLTIMASPRPPHAP*RPARRLCLCLP 287
           G  PPP ++ PPP +   SP   PT  PP   H+       P P HAP R A       P
Sbjct: 32  GYLPPPVTSQPPPSSIGLSPPSAPTTTPPSRGHV-------PSPRHAPPRHA------YP 78

Query: 288 TCRH---PPKTYKPQPLSQPLP 344
              H   PP    P P    LP
Sbjct: 79  PPSHGHLPPSVGGPPPHRGHLP 100

 Score = 31.6 bits (70), Expect = 6.0
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 113 SGPPPASALRSPPPAYVTSLPSYAQTTSP-HTPAAH 217
           S PPP+S   SPP A  T+ PS     SP H P  H
Sbjct: 40  SQPPPSSIGLSPPSAPTTTPPSRGHVPSPRHAPPRH 75

 Score = 31.6 bits (70), Expect = 6.0
 Identities = 29/107 (27%), Positives = 36/107 (33%)
 Frame = +2

Query: 62  YSRGDPSQTTAPVCKQESGPPPASALRSPPPAYVTSLPSYAQTTSPHTPAAHNNGKPKAS 241
           YS   P+    P       PPP +    PPP Y    P+Y    SP  PA      P  +
Sbjct: 416 YSPPPPTYAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPTY----SPPPPAYAQPPPPPPT 471

Query: 242 ARALETSASSVSVSADVSTPAKDLQATAPLTTSTTAQPLLQSPQ*PH 382
                 + S    S   S P   +Q   P T S      +  P  PH
Sbjct: 472 YSPPPPAYSPPPPSPIYSPPPPQVQPLPP-TFSPPPPRRIHLPPPPH 517

>ref|NP_642428.1| ribonuclease E [Xanthomonas axonopodis pv. citri str. 306]
            gi|21108335|gb|AAM36964.1| ribonuclease E [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1221

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 32/98 (32%), Positives = 48/98 (48%)
 Frame = +2

Query: 77   PSQTTAPVCKQESGPPPASALRSPPPAYVTSLPSYAQTTSPHTPAAHNNGKPKASARALE 256
            P+   AP     +G  P +A  +P PA  + + S A T+SP  P+A  +  P A+A+A +
Sbjct: 1000 PAAAVAPA----AGTAPVAAAVAPAPAVASPVTSNAATSSPQQPSAPASAAPPAAAQAAK 1055

Query: 257  TSASSVSVSADVSTPAKDLQATAPLTTSTTAQPLLQSP 370
                  + SADV TP+  +QAT       T    L +P
Sbjct: 1056 PDQQQPAASADVETPS--VQATPVQPARATPAEDLSAP 1091

>pir||S71558 probable cell wall-plasma membrane linker protein PRP precursor -
           rape gi|1155068|emb|CAA64425.1| cell wall-plasma
           membrane linker protein [Brassica napus]
          Length = 376

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 49/163 (30%), Positives = 56/163 (34%), Gaps = 8/163 (4%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPP---PHSAVPPPHTSPHCHPTHKPPHLTHLL 212
           P   P   P V P K P          +PP   PH    PP   PH HP  KPP   H +
Sbjct: 50  PAAKPPKPPAVKPPKPPT---------KPPTLKPHPHPKPPTVRPHPHP--KPPTKPHPI 98

Query: 213 ---LTIMASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPL--PQHSLCYSLRND 377
               TI   P  P  P +P        PT + PP T KP P   P   P  S        
Sbjct: 99  PKPPTIKPPPSTPKPPTKP--------PTVKPPPSTPKP-PTKPPTVKPPPSTPKPPTKP 149

Query: 378 PTSSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPTQFSTPAP 506
           PT          P  +     P P    T  ++TP    TP P
Sbjct: 150 PTVKPPPSTPKPPTHKPPTVCPPPTPTPTPPVVTPPTPPTPTP 192

>emb|CAE02916.1| OSJNBb0108J11.8 [Oryza sativa (japonica cultivar-group)]
          Length = 360

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 17/166 (10%)
 Frame = +3

Query: 60  YTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCH--PTHKPPHLTHLLLTIMASP 233
           YTP  TP K P     +      PPH   P P   P  H  P + PP  T    T   +P
Sbjct: 31  YTPTPTPVK-PAPKPEKPPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTP 89

Query: 234 RPPHAP*RPARRLCLCLPT------CRHPPK----TYKPQPLSQPLPQHSL----CYSLR 371
           +P   P  P        PT         PPK    TYKPQP   P P         Y  +
Sbjct: 90  KPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQ 149

Query: 372 NDPTSSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPTQFS-TPAP 506
             PT          P       +P+P   K     TPT ++ TP P
Sbjct: 150 PKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTP 195

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 1/152 (0%)
 Frame = +3

Query: 54  PRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTIMASP 233
           P Y P+  P   P          +P P    P P+T     P++KP    +   T    P
Sbjct: 176 PSYKPQPKPTPTPYTPTPTPPSYKPQP-KPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQP 234

Query: 234 RP-PHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLPQHSLCYSLRNDPTSSFNLLCAH 410
           +P P    +PA       P   +PP TYKPQP   P P     Y  +  PT +       
Sbjct: 235 KPNPPPTYKPAPPTYKPQPK-PNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPT 293

Query: 411 TPGEESDNWSPSPIQLKTMQLITPTQFSTPAP 506
                   + P P    T     P    TP+P
Sbjct: 294 PKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSP 325

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 42/144 (29%), Positives = 50/144 (34%)
 Frame = +3

Query: 54  PRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTIMASP 233
           P YTP   P   P  Y         P     PPP+T     P H P   T+        P
Sbjct: 71  PAYTPP-KPTPTPPTYT--------PTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKP 121

Query: 234 RPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLPQHSLCYSLRNDPTSSFNLLCAHT 413
            PP    +P        PT    P TYKPQP   P P     Y  +  PT +      +T
Sbjct: 122 TPPTYKPQPKPTPAPYTPT--PTPPTYKPQPKPTPPP----TYKPQPKPTPT-----PYT 170

Query: 414 PGEESDNWSPSPIQLKTMQLITPT 485
           P     ++ P P    T    TPT
Sbjct: 171 PTPTPPSYKPQPKPTPTPYTPTPT 194

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 45/163 (27%), Positives = 58/163 (34%), Gaps = 8/163 (4%)
 Frame = +3

Query: 42  PLVTPRYTPE-------VTPAKRPLLYASRNRGRRPPPHSAVP-PPHTSPHCHPTHKPPH 197
           P   P Y P+        TP   P  Y  + +   P P++  P PP   P   PT  P  
Sbjct: 152 PTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPT-PTPYTPTPTPPSYKPQPKPTPTPYT 210

Query: 198 LTHLLLTIMASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLPQHSLCYSLRND 377
            T    +    P+P   P    +      PT +  P TYKPQP   P P     Y  +  
Sbjct: 211 PTPTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPP----TYKPQPK 266

Query: 378 PTSSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPTQFSTPAP 506
           PT +      +TP      + P P    T    TPT    P P
Sbjct: 267 PTPT-----PYTP----PTYKPQPKPTPTPTPYTPTPKPNPPP 300

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 45/154 (29%), Positives = 57/154 (36%), Gaps = 6/154 (3%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAVP-PPHTSPHCHPTHKPPHLTHLLLT 218
           P  TP+ TP   PA  P           PP ++  P PP  +P   PT+KP         
Sbjct: 94  PPYTPKPTP---PAHTP----------TPPTYTPTPTPPKPTP---PTYKP--------- 128

Query: 219 IMASPRPPHAP*RPARRLCLCLPTCR-HPPKTYKPQPLSQPLPQHSL----CYSLRNDPT 383
               P+P  AP  P        P  +  PP TYKPQP   P P         Y  +  PT
Sbjct: 129 ---QPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPT 185

Query: 384 SSFNLLCAHTPGEESDNWSPSPIQLKTMQLITPT 485
            +      +TP     ++ P P    T    TPT
Sbjct: 186 PT-----PYTPTPTPPSYKPQPKPTPTPYTPTPT 214

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 26/95 (27%), Positives = 32/95 (33%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKPPHLTHLLLTI 221
           P   P Y P+  P   P  Y    +   PP +   P P  +P   P    P  T    T 
Sbjct: 271 PYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTP--TPYKPQPKPTPSPYTP 328

Query: 222 MASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQP 326
             +P PP     P        P    PP +Y P P
Sbjct: 329 KPTPTPPTYTPTPT-------PPYHKPPPSYTPGP 356

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 27/102 (26%), Positives = 35/102 (33%), Gaps = 1/102 (0%)
 Frame = +3

Query: 42  PLVTPRYTPEVTPAKRPLLYASRNRGRRPPPHSAVPPPHTSPHCHPTHKP-PHLTHLLLT 218
           P   P Y P+  P   P    +     +P P      P   P+  PT+KP P  T     
Sbjct: 255 PNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTP 314

Query: 219 IMASPRPPHAP*RPARRLCLCLPTCRHPPKTYKPQPLSQPLP 344
               P+P  +P  P         T    P  +KP P   P P
Sbjct: 315 YKPQPKPTPSPYTPKPTPTPPTYTPTPTPPYHKPPPSYTPGP 356



EST assemble image


clone accession position
1 CM029c05_r AV389327 1 536
2 HC006g07_r AV632325 34 511




Chlamydomonas reinhardtii
Kazusa DNA Research Institute