KCC001237A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001237A_C01 KCC001237A_c01
catacatacaacaccgcagatatatatgaccatGAGCTATTAAGTCTGAACTACCTGCTT
CGAGGCAGTCAACTCAAAAGATGTATCGGCGCTGGCAAAAGGAGGCGGTGGACAAATACC
GGACGCTTGAGTCCTTTAACACATTTTTGTCGCGCCTGACGCCTCTGACCGGCCCGAACG
TTCTTCGCGCCTGCGACCCGGCCGATCTCTACTCTGTGCTCAGCGCGCTGCACAGCAAGG
ACCGCAACCCGGAGCTGCAGGTCAACAACAATCCTGGCTTCTACTACTTCCTGGCAGATG
CAGTTCAGCCCCCGGGAAGCGAGGCAGCAGGCGTCGACACGGGCGTCTCGGTGCCGACCG
GCGGCGGCGGCTCAGAGCCTGTTCCTGCCGCTGGCCCGGTCCGGCGAGAGGCTGTCATTC
CTGTGAGCAGCAAATGTACGCTGCTCACCACGGACGTGCTGGCGCAGATGTTTAAATTGG
AGGCGCACCCAAACGTGTCGCACATCCTGCTCGCCATCGTGGACGACGATGGCTCGGCCT
CGCTGGTCCGCGTGTTCAACTACATTCAGCCGCCCTTTGAGGGTCCGGAGACGTTGCCGC
CACTAGACACAGAGGGCGGCGCCGTGGGCGGGGAGAGTGACGACGACTGAGGGGGGCGGG
AGTGGCGCGGCAGCCCTGACGAGCGGTACCAACCACTTTAAACCAGCTTGACGCACCATA
CATGATCGACGCGCCAGAGGACTGCCCGCTCACGAGCTCTGCATACAGCTTCAGTAGCGA
CCGGCAGACGCCAAGACGGGGCGCACATGGGCAGCCTGTGCAGCCGCTACACCCCCCGCG
GCGTGTAGAGCGGGGCTGGCGGGGCCAACGACCCCAGCGGGCTCGCCAACTTCGCGCTGC
GAGCTCGGCAGGCCCGCCCCCAAACCCAGCGCAAGCCGGCCGCAGCGTCATTATCATCAC
TTCCTGAGTCGGGCATGTGCGTGCGGGGATCTTCCCATGTAGCAGCTCTTCAACTGTGGC
CGCGACGGTGCTGGCCTGAACCTGGTTGCGCGTTGCTTGCCGGAGCATTGGAGCCTGGCT
GGTGGGGGTTCGGCAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001237A_C01 KCC001237A_c01
         (1097 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC86069.1| unnamed protein product [Homo sapiens]                 47  6e-04
gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]         45  0.002
ref|XP_308046.1| ENSANGP00000019335 [Anopheles gambiae] gi|21291...    44  0.007
ref|ZP_00091362.1| COG2192: Predicted carbamoyl transferase, Nod...    43  0.008
ref|ZP_00058502.1| hypothetical protein [Thermobifida fusca]           42  0.014

>dbj|BAC86069.1| unnamed protein product [Homo sapiens]
          Length = 201

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 52/164 (31%), Positives = 63/164 (37%), Gaps = 21/164 (12%)
 Frame = +2

Query: 515 HRGRRWLGLAGPRVQLHS-------AAL*GSGDVAATRHRGRRRGRGE*RRLRGA---GV 664
           HRG  WLG  G      S        A  G G V A + R RR G    R   GA   G 
Sbjct: 19  HRGATWLGRGGGAGPGQSGPGHGQGTATPGPGQVRAAQARARRGGGARERPAEGAREPGA 78

Query: 665 ARQP*RAVPTTLNQLDAPYMIDAPEDCP-----LTSSAYSFSSDRQTPRRGAHGQPVQPL 829
           AR+  RA P     L A   + A    P        +   F   RQ+PR  +HGQP + L
Sbjct: 79  ARRGARAGPGA--HLRAARTLRARAQTPQLRREAACAGSFFPKCRQSPR--SHGQPFRQL 134

Query: 830 HPPRRVER-GW-----RGQRPQRARQLRAASSAGPPPNPAQAGR 943
               +  R GW      G+RP R  +  A +  G    P   GR
Sbjct: 135 QSHWQAPRQGWPAQEGGGRRPSRREEAAALAGGGKRTAPGLRGR 178

>gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]
          Length = 816

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 59/174 (33%), Positives = 67/174 (37%), Gaps = 1/174 (0%)
 Frame = -3

Query: 690 GTARQGCRATPAPLSRRHSPRPRRR-PLCLVAATSPDPQRAAECS*TRGPARPSHRRPRW 514
           G  R   R  P P  RR  PRPRRR PL      +PD +R       RGP R     PR 
Sbjct: 309 GPPRGDARRGPPPRPRR--PRPRRRAPLRSARRGAPDARRRRRRV-CRGPPRGRGGAPR- 364

Query: 513 RAGCATRLGAPPI*TSAPARPW*AAYICCSQE*QPLAGPGQRQEQALSRRRRSAPRRPCR 334
             G A    APP      ARP             P  G    + +A + R R A R P R
Sbjct: 365 --GPARLPRAPP----PAARPG-----------PPPPGRALVRARAPAARLRGARRGPPR 407

Query: 333 RLLPRFPGAELHLPGSSRSQDCC*PAAPGCGPCCAAR*AQSRDRPGRRREERSG 172
             L R P A   +P   R+     P AP   P        +  RPGRRR  R G
Sbjct: 408 GALRRRPRARPRVPRVLRAPRRDRPVAPRPRPVRRGP-PGAEARPGRRRGRRGG 460

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 81/288 (28%), Positives = 101/288 (34%), Gaps = 36/288 (12%)
 Frame = +2

Query: 191 LRPGRSLLCAQRAAQQGPQPG-AAGQQQSWLLLLPGRCSSAPGKR---------GSRRRH 340
           + P R+ LC  R     P+PG   G Q++     P      PG+R         G     
Sbjct: 1   MHPARARLCDVRRRPGAPRPGRPRGAQRA---PRPAPDPPGPGRRPPRAPGALGGMLPAA 57

Query: 341 GRL-GADRRRRLRACSCRWPGPARGCHSC--EQQMYAAHHGRAGADV*IGGAPKRVAHPA 511
           GRL G  R R LRA S    G  RG       +    A  GR G    +G    R   P 
Sbjct: 58  GRLAGPARGRGLRAAS----GALRGVRPVLRPRGRPVARPGRVGRGGGLGRL--RDGRPR 111

Query: 512 RHRGRRWLGLAGPRVQLHSAAL*GSGDVAATRHRGRRRGRGE*RRLRGAGVARQP*RAVP 691
           +    R LG  G R           GD    R R  RRG G  R    A V R+P RA  
Sbjct: 112 QRAPGRALGAPGRRRPPAGRRAPVRGDRRRGRPRAPRRGPGG-RLGPRAPVCRRPRRAGR 170

Query: 692 TTLNQLDAPYMIDA-------PEDCPLTSSAYSFSSDRQTPR--RGAHGQP--------- 817
               +  AP  +         P   P          +R  PR   G HG P         
Sbjct: 171 GAPGR--APGRVPVRRRVPARPAPPPAARYRVRALPERGAPRGAPGRHGPPGLRPRGRGA 228

Query: 818 ---VQPLHPPRR--VERGWRGQRPQRARQLRAASSAGPPPNPAQAGRS 946
               +PL  PR     RG R +  + A + R  ++ GPP   A  GR+
Sbjct: 229 CARRRPLPVPRARGPPRGVRARLGRDAAR-RGVAARGPPARAAAPGRA 275

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 75/270 (27%), Positives = 95/270 (34%), Gaps = 23/270 (8%)
 Frame = +2

Query: 197  PGRSLLCAQRAAQQGPQPGAAGQQQSWLLLLPGRCSSAPGKRGSRRRHGRLGADRRRRLR 376
            PGR+     R  + GP+P      +       GR S  PG+RG  R   R G   R R  
Sbjct: 272  PGRA---GDRRGRPGPRPRVRAPLRP--RHADGRLSPPPGRRGPPRGDARRGPPPRPRRP 326

Query: 377  ACSCRWP--GPARGCHSCEQQMYAAHHGRAGADV*IGGAPK------RVAHPARHRGRRW 532
                R P     RG     ++      G        GGAP+      R   PA   G   
Sbjct: 327  RPRRRAPLRSARRGAPDARRRRRRVCRGPPRGR---GGAPRGPARLPRAPPPAARPGPPP 383

Query: 533  LGLAGPRVQLHSAAL*GSGDVAATRHRGRRRGRGE*RRLRGAGVARQP*RAVPTTLNQLD 712
             G A  R +             A R RG RRG       RGA + R+P RA P     L 
Sbjct: 384  PGRALVRAR-----------APAARLRGARRGPP-----RGA-LRRRP-RARPRVPRVLR 425

Query: 713  APYMID--APEDCPLTSSAYSFSSDRQTPRRGAHGQP-------VQPLHPPRRVER---- 853
            AP      AP   P+       +  R   RRG  G P        Q   P  R  R    
Sbjct: 426  APRRDRPVAPRPRPVRRGPPG-AEARPGRRRGRRGGPPTSGLAFTQSGAPDPRAARRPAT 484

Query: 854  --GWRGQRPQRARQLRAASSAGPPPNPAQA 937
                R     RA + RA ++AG PP+ +++
Sbjct: 485  SPRSRATSSSRALKRRAVATAGAPPSASRS 514

>ref|XP_308046.1| ENSANGP00000019335 [Anopheles gambiae] gi|21291511|gb|EAA03656.1|
           ENSANGP00000019335 [Anopheles gambiae str. PEST]
          Length = 414

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 66/273 (24%), Positives = 99/273 (36%), Gaps = 23/273 (8%)
 Frame = +1

Query: 172 ARTFFAPATRPISTLCSARCTARTATRSCRSTTILASTTSWQMQFSPREARQ-----QAS 336
           ART  A AT    T  SA  T + A+ S  + T     T+     +P+ + +       +
Sbjct: 123 ARTKAASATSTTKTATSASSTTKAASASSVTRTAAPKPTTGSAGAAPKPSSRLSTASSTT 182

Query: 337 TRASRCRPAAAAQSLFLPLARSGERLSFL*AANVRCSPRTCWRRCLNWRRTQTCRTSCSP 516
           TR    RP++A  S  +P   S    +         S  T      +   T+T +T+ S 
Sbjct: 183 TRTVTSRPSSAVSSASVPSKTSTTTTTTAKRTVAAKSSLTNGTSATDGAATRTTKTTTSS 242

Query: 517 SWT-TMARPRWSAC------------STTFS--RPLRVRRRCRH*TQRAAPWAGRVTTTE 651
           +   T A  R SA             STT +  +PL   +     T  ++  AGR TTT 
Sbjct: 243 TVPRTGAATRTSATAGSGLAGKTSSSSTTAAAKKPLLDAKTTASKTASSSTAAGRTTTTT 302

Query: 652 GGGSGAAALTSGTNHFKPA*RTIHDRRARGLPAHELCIQLQ*---RPADAKTGRTWAACA 822
                  A T+G     P+ R +         +    +       +PA     +  A  A
Sbjct: 303 RTSLAPKAATAGAT--SPSVRKVQQNGVAAKKSTTSAVSPAPGTKKPAPITRPKGTATTA 360

Query: 823 AATPPAACRAGLAGPTTPAGSPTSRCELGRPAP 921
           AA P AA   G+ G  T A  P     +   +P
Sbjct: 361 AAAPAAAKTNGVVGTVTEAAVPVDAAPVAVTSP 393

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 9/261 (3%)
 Frame = +1

Query: 187 APATRPISTLCSARCTARTATRSCRSTTILASTTSWQMQFSPREARQQASTRASRCRPAA 366
           APAT+   T  S+   ART   S  STT  A++ S     + + A   + TR +  +P  
Sbjct: 110 APATK---TTASSVAAARTKAASATSTTKTATSAS----STTKAASASSVTRTAAPKPTT 162

Query: 367 AAQSLFLPLARSGERLSFL*AANVRCSPRTCWRRCLNWRRTQTCRTSCSPSWTTMARPRW 546
            +        +   RLS         + RT   R  +   + +  +  S + TT A+   
Sbjct: 163 GSAG---AAPKPSSRLS----TASSTTTRTVTSRPSSAVSSASVPSKTSTTTTTTAKRTV 215

Query: 547 SACST----TFSRPLRVRRRCRH*TQRAAPWAGRVTTTEG-GGSGAAALTSGTNHFKPA* 711
           +A S+    T +      R  +  T    P  G  T T    GSG A  TS ++    A 
Sbjct: 216 AAKSSLTNGTSATDGAATRTTKTTTSSTVPRTGAATRTSATAGSGLAGKTSSSSTTAAAK 275

Query: 712 RTIHDRRARGLPAHELCIQLQ*RPADAKTGRTWAACAAATPPAACRAGLAGPTT----PA 879
           + + D +                 +    GRT      +  P A  AG   P+       
Sbjct: 276 KPLLDAKTTASKT---------ASSSTAAGRTTTTTRTSLAPKAATAGATSPSVRKVQQN 326

Query: 880 GSPTSRCELGRPAPKPSASRP 942
           G    +      +P P   +P
Sbjct: 327 GVAAKKSTTSAVSPAPGTKKP 347

>ref|ZP_00091362.1| COG2192: Predicted carbamoyl transferase, NodU family [Azotobacter
           vinelandii]
          Length = 1081

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 82/298 (27%), Positives = 103/298 (34%), Gaps = 41/298 (13%)
 Frame = +2

Query: 170 RPERSSRLRPGR-------SLLCAQRAAQQGPQPGAAGQQQSWLLLLPGRCS-------- 304
           R  R+ RL  G+       + LC  R   +    G A  ++  +   P R          
Sbjct: 29  RRRRTGRLASGQPAARAAGTTLCRSRRVARPAGAGQAFGRRQGVAAFPARAEGCAPARRP 88

Query: 305 ----SAPGKRGSRRRHGRLGADRRRRLRACSCRWPGPARGCHSCEQQMYAAHHGRAGADV 472
               +AP +RG+ R  GRL A R  R      R PGP RG         A   GRA A  
Sbjct: 89  AAGHAAPARRGAGRGRGRLAAVRVSR------RGPGPERG--------LATGGGRAAAVR 134

Query: 473 *IGGAPKRVAHPARHRGRRWLGLAGPRVQLHSAAL*GSGDVAATRHRGRRR-GRGE*RR- 646
              G  +R +   R   RR   LAG       AA  G         RGRRR G G   R 
Sbjct: 135 RPAGGTRRGSGRHRRPARRGT-LAGRHAPGQPAAPRGPA------VRGRRRCGAGTDARQ 187

Query: 647 ----LRGAGVARQP*RAVPTTLNQLDAPYMIDAPEDCPLTSSAYSFSSDRQTP------R 796
                 GAG  R+  R VP     L              T+ A      R  P      +
Sbjct: 188 AAVARAGAGEPRRLLRPVPGRARALHRG-----------TAGALPAGQRRARPAAGGAAQ 236

Query: 797 RGAHGQPVQP----------LHPPRRVERGWRGQRPQRARQLRAASSAGPPPNPAQAG 940
            G  G P+ P          LHP +R  R     R    ++  AA +AG P    +AG
Sbjct: 237 GGCQGAPLAPARLPRQARPRLHPVQRAARAHGAARGAPRQRGPAAPAAGRPGCAHRAG 294

>ref|ZP_00058502.1| hypothetical protein [Thermobifida fusca]
          Length = 1903

 Score = 42.4 bits (98), Expect = 0.014
 Identities = 51/175 (29%), Positives = 59/175 (33%), Gaps = 6/175 (3%)
 Frame = -3

Query: 651 LSRRHSPRPRRRPLCLVAATSPDPQRAA--ECS*TRGPARPSHRRPRWRAGCATRLGAPP 478
           ++R H  R +RRP    A   P P R         R P RP  R PR R G  T     P
Sbjct: 283 VARPHHHRAQRRPRPRAAPAHPAPHRPRLPRDRLPRPPRRPETRHPRRRRGRRT-----P 337

Query: 477 I*TSAPARPW*AAYICCSQE*QPLAGPGQRQEQALSRRRRSAPRRPCRRLLPRFPGAELH 298
           +    PARP                  G R  +  +      PR P RR L R P     
Sbjct: 338 VPLPRPARP----------------HRGTRPRKRAAAGTHRPPRPPRRRPLARLPARSGK 381

Query: 297 LPGSSRSQDCC*PAAPGCGPCCAAR*AQSRDRPGRRREE----RSGRSEASGATK 145
             G  RS        P   P    R    RDR  R R      R GR+   GA +
Sbjct: 382 ERGPRRSH-------PARHPLRIRRLGAHRDRSRRARRAHGRLRRGRAPRLGAAR 429



EST assemble image


clone accession position
1 LCL048b11_r AV628864 1 316
2 CM029a06_r AV389311 27 657
3 LC016a11_r AV620000 411 936
4 CM066h12_r AV390839 474 1097




Chlamydomonas reinhardtii
Kazusa DNA Research Institute