KCC001234A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001234A_C01 KCC001234A_c01
gcaccagggcttctgagggcagccgctacaccGAGCTCGCACGCGGCAGCATCCCCCGCC
TGCTGCACTCTGCCGCTGGCCTCACGCTGAACGGCACTGCCATTCTTGCCGGTGGCGACC
GCTCCTCACGCTACTGGATGCCTGCGGATGAGGCCTACAGCCCCAGCTCCACCGGCTTTG
CGGAGTACCGTGTTGAGCTGTTTGCCCCGCCTCAGGTGTTTGACACACAGAACCGCCCCG
CCATCATGGCCTGCCCATTCAGCATTGGATTTAGTGACGTGACGTCGATTGCCTACCTCA
TCCCGAATACCACGGCCCGCGTGACCTCGGTGGTGCTGATCGCTCCCAGCAGCGACACGC
ACACCTTCAACATGCACCAGCGCATCGTGGAGCTCGAGATTCTGGATTCTGACAACGACA
ACAACCATGTGGGTGTGGATGGCGACCGCTCCGTGACCGTGCGCGGCCCGCCCAACGCCA
ACGTGGCGCCGCCCGGTCCCTACATGATCTTCCTCCTTAGCGGGCGCACCTGGGGCCCCG
GCCCAGTGATCAACGTGGTTCGGAACTAAAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001234A_C01 KCC001234A_c01
         (572 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_927197.1| similarity to galactose oxidase [Gloeobacter vi...    76  4e-13
ref|NP_191321.1| expressed protein [Arabidopsis thaliana] gi|748...    71  1e-11
gb|AAA87595.1| glyoxal oxidase precursor [Phanerochaete chrysosp...    69  5e-11
pir||A48296 glyoxal oxidase (EC 1.2.3.-) precursor - basidiomyce...    69  5e-11
ref|NP_190963.1| expressed protein [Arabidopsis thaliana] gi|112...    68  1e-10

>ref|NP_927197.1| similarity to galactose oxidase [Gloeobacter violaceus]
           gi|35214825|dbj|BAC92192.1| gll4251 [Gloeobacter
           violaceus]
          Length = 761

 Score = 75.9 bits (185), Expect = 4e-13
 Identities = 54/165 (32%), Positives = 80/165 (47%)
 Frame = +3

Query: 27  YTELARGSIPRLLHSAAGLTLNGTAILAGGDRSSRYWMPADEAYSPSSTGFAEYRVELFA 206
           ++ LA    PR+ HS A L  +G  + AGG +        + AY PS+        E+++
Sbjct: 359 WSTLASMPTPRIYHSIAALLPDGRVLSAGGGQGG------ESAYRPSA--------EIYS 404

Query: 207 PPQVFDTQNRPAIMACPFSIGFSDVTSIAYLIPNTTARVTSVVLIAPSSDTHTFNMHQRI 386
           PP +F    RP + A P S+G+    ++         RVT V L   SS TH FN +QR 
Sbjct: 405 PPYLFRGP-RPTVSAAPISVGYGQAFTVQSPEAADIRRVTWVRL---SSVTHAFNENQRF 460

Query: 387 VELEILDSDNDNNHVGVDGDRSVTVRGPPNANVAPPGPYMIFLLS 521
            EL    S N           ++TV  P N N+APPG Y++++L+
Sbjct: 461 NELTFTRSGN-----------TLTVTAPANGNLAPPGHYLLYVLN 494

>ref|NP_191321.1| expressed protein [Arabidopsis thaliana] gi|7485502|pir||T06758
           probable galactose oxidase (EC 1.1.3.9) F15B8.190
           [similarity] - Arabidopsis thaliana
           gi|4678285|emb|CAB41193.1| putative protein [Arabidopsis
           thaliana]
          Length = 547

 Score = 70.9 bits (172), Expect = 1e-11
 Identities = 52/168 (30%), Positives = 86/168 (50%), Gaps = 4/168 (2%)
 Frame = +3

Query: 27  YTELARGSIPRLLHSAAGLTLNGTAILAGGDRSSRYWMPADEAYSPSSTGFAEYRVELFA 206
           +T ++  S PR+ HS+A L  +G  +L GG     Y+   +  Y        +  +E ++
Sbjct: 377 FTVMSTPSRPRMYHSSAILLPDGR-VLVGGSNPHVYYNFTNVEYP------TDLSLEAYS 429

Query: 207 PPQVFDTQN--RPAIMACPFSI-GFSDVTSIAYLIPN-TTARVTSVVLIAPSSDTHTFNM 374
           PP +F T +  RP I+     +  +  + ++ + I    T  + SV ++APS  TH+F M
Sbjct: 430 PPYLFFTSDPIRPKILLTSDKVLSYKRLFNVDFSIAQFLTVDLLSVRIVAPSFTTHSFAM 489

Query: 375 HQRIVELEILDSDNDNNHVGVDGDRSVTVRGPPNANVAPPGPYMIFLL 518
           +QR+V L++L    D     +     V+  GP  A +APPG YMIFL+
Sbjct: 490 NQRMVILKLLSVTRDQ----LTNSYRVSALGPSTAEIAPPGYYMIFLV 533

>gb|AAA87595.1| glyoxal oxidase precursor [Phanerochaete chrysosporium]
          Length = 559

 Score = 68.9 bits (167), Expect = 5e-11
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
 Frame = +3

Query: 48  SIPRLLHSAAGLTLNGTAILAGGDRSSRYWMPADEAYSPSSTGFAEYRVELFAPPQVFDT 227
           +IPR+ HS   LT  G   + G + +  +  P     +P     +E R+E   PP +F  
Sbjct: 394 TIPRMYHSTVTLTQQGNFFIGGNNPNMNFTPPG----TPGIKFPSELRIETLDPPFMF-- 447

Query: 228 QNRPAIMACPFSIGFSDVTSIAYLIPNTT-ARVTSVVLIAPSSDTHTFNMHQRIVELEIL 404
           ++RPA++  P  + F    ++   IP+   A    V L+     +H F+   R+V +E  
Sbjct: 448 RSRPALLTMPEKLKFGQKVTVPITIPSDLKASKVQVALMDLGFSSHAFHSSARLVFMES- 506

Query: 405 DSDNDNNHVGVDGDR-SVTVRGPPNANVAPPGPYMIFLLSGRTWGPG 542
                     +  DR S+T   PPN  V PPGP ++FL       PG
Sbjct: 507 ---------SISADRKSLTFTAPPNGRVFPPGPAVVFLTIDDVTSPG 544

>pir||A48296 glyoxal oxidase (EC 1.2.3.-) precursor - basidiomycete
           (Phanerochaete chrysosporium) gi|1050302|gb|AAA87594.1|
           glyoxal oxidase precursor [Phanerochaete chrysosporium]
          Length = 559

 Score = 68.9 bits (167), Expect = 5e-11
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
 Frame = +3

Query: 48  SIPRLLHSAAGLTLNGTAILAGGDRSSRYWMPADEAYSPSSTGFAEYRVELFAPPQVFDT 227
           +IPR+ HS   LT  G   + G + +  +  P     +P     +E R+E   PP +F  
Sbjct: 394 TIPRMYHSTVTLTQQGNFFIGGNNPNMNFTPPG----TPGIKFPSELRIETLDPPFMF-- 447

Query: 228 QNRPAIMACPFSIGFSDVTSIAYLIPNTT-ARVTSVVLIAPSSDTHTFNMHQRIVELEIL 404
           ++RPA++  P  + F    ++   IP+   A    V L+     +H F+   R+V +E  
Sbjct: 448 RSRPALLTMPEKLKFGQKVTVPITIPSDLKASKVQVALMDLGFSSHAFHSSARLVFMES- 506

Query: 405 DSDNDNNHVGVDGDR-SVTVRGPPNANVAPPGPYMIFLLSGRTWGPG 542
                     +  DR S+T   PPN  V PPGP ++FL       PG
Sbjct: 507 ---------SISADRKSLTFTAPPNGRVFPPGPAVVFLTIDDVTSPG 544

>ref|NP_190963.1| expressed protein [Arabidopsis thaliana] gi|11282416|pir||T45935
           probable galactose oxidase (EC 1.1.3.9) F5K20.250
           [similarity] - Arabidopsis thaliana
           gi|7630015|emb|CAB88357.1| putative protein [Arabidopsis
           thaliana] gi|15809876|gb|AAL06866.1| AT3g53950/F5K20_250
           [Arabidopsis thaliana] gi|26449362|dbj|BAC41808.1|
           unknown protein [Arabidopsis thaliana]
           gi|27363378|gb|AAO11608.1| At3g53950/F5K20_250
           [Arabidopsis thaliana]
          Length = 545

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 52/170 (30%), Positives = 79/170 (45%), Gaps = 2/170 (1%)
 Frame = +3

Query: 18  GSRYTELARGSIPRLLHSAAGLTLNGTAILAGGDRSSRYWMPADEAYSPSSTGFAEYRVE 197
           G R+  L  G++PR+ HS A L  +G  +LAG +    Y   A+           E R+E
Sbjct: 375 GLRFMTLNPGTVPRMYHSTANLLPDGRILLAGSNPHYFYKFNAEFP--------TELRIE 426

Query: 198 LFAPPQVF-DTQN-RPAIMACPFSIGFSDVTSIAYLIPNTTARVTSVVLIAPSSDTHTFN 371
            F+P  +  D  N RP I   P  I + +V  +   +P     +  +   +    TH+F+
Sbjct: 427 AFSPEYLSPDRANLRPEIQEIPQIIRYGEVFDVFVTVPLPVVGIIQMNWGSAPFATHSFS 486

Query: 372 MHQRIVELEILDSDNDNNHVGVDGDRSVTVRGPPNANVAPPGPYMIFLLS 521
             QR+V+L +  S  D    GV G   +    PPN  V+PPG YM F ++
Sbjct: 487 QGQRLVKLTVAPSVPD----GV-GRYRIQCTAPPNGAVSPPGYYMAFAVN 531



EST assemble image


clone accession position
1 CM028e07_r AV387694 1 572
2 MX011e08_r BP086559 33 415




Chlamydomonas reinhardtii
Kazusa DNA Research Institute