Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001233A_C01 KCC001233A_c01
(628 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00058502.1| hypothetical protein [Thermobifida fusca] 43 0.004
pir||S13141 hypothetical protein (ribosomal RNA repeat region) -... 42 0.006
ref|ZP_00006347.1| COG2199: FOG: GGDEF domain [Rhodobacter sphae... 42 0.006
emb|CAB44501.1| unnamed protein product [Giardia intestinalis] 42 0.006
dbj|BAC00544.1| P0489G09.12 [Oryza sativa (japonica cultivar-gro... 42 0.010
>ref|ZP_00058502.1| hypothetical protein [Thermobifida fusca]
Length = 1903
Score = 42.7 bits (99), Expect = 0.004
Identities = 38/99 (38%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +2
Query: 257 PLATPG--YSRPRSRQRRRSF*QHRPRQRLRSPACTRKLTWRSGFRRTALRTTS--ITPL 424
P A P R RQ R F HR R R+ P R+ A R P
Sbjct: 243 PAARPARPVHRKLGRQPRLRFLPHRDRFRVLPPRHARQTRVARPHHHRAQRRPRPRAAPA 302
Query: 425 APTPPRRLPGLPCTTSP-PPIRSSTRLSRRRRGRRTQTP 538
P P R P LP P PP R TR RRRRGRRT P
Sbjct: 303 HPAPHR--PRLPRDRLPRPPRRPETRHPRRRRGRRTPVP 339
>pir||S13141 hypothetical protein (ribosomal RNA repeat region) - Giardia
lamblia
Length = 294
Score = 42.4 bits (98), Expect = 0.006
Identities = 34/89 (38%), Positives = 41/89 (45%), Gaps = 3/89 (3%)
Frame = +2
Query: 326 PRQRLRSPACTRKLTWRSGFRRTALRTTSITPLAPTPPRRLPGLPCTTSPPPIRSSTRLS 505
P R R+ AC + W +G R PL PP RLP PC +PPP + RLS
Sbjct: 89 PSARPRTWACLPVVAWPAGGAGPPCR-----PLCLDPPGRLPRAPCGPAPPPC-AHGRLS 142
Query: 506 RRRR--GRRTQTPSAPQGHRHL-QNGLCA 583
+ R G R P P GH L Q+ L A
Sbjct: 143 VQGRPGGGRALPPGHPLGHPALPQSSLSA 171
>ref|ZP_00006347.1| COG2199: FOG: GGDEF domain [Rhodobacter sphaeroides]
Length = 761
Score = 42.4 bits (98), Expect = 0.006
Identities = 46/137 (33%), Positives = 55/137 (39%), Gaps = 6/137 (4%)
Frame = +3
Query: 228 PRACRAQGGAPWPPRAIPDHEAGSGGEASNNTAPGKG*EAQHVHGS*RGGA----ASDVR 395
PRA A+G PPR +P H + G+ + A +G GGA AS R
Sbjct: 519 PRAGVARGD---PPRRVP-HLLRTDGQPRRDRARDRG----------SGGADPLGASAAR 564
Query: 396 PCGQHPLHHWPQRRHGGFLGSRAQPHHHQ*GVLRD*AGGGAGGGPRHLPRLRGIAICKTG 575
G H LH P RR G R P H G R G G P RG+ + G
Sbjct: 565 ASGAHRLH--PLRR-----GDRLHPRHRPLGAARGGTGARPLGRGSRAPPSRGLDQHQLG 617
Query: 576 SVPVRQASDD--RPVGR 620
+VPVR D R GR
Sbjct: 618 AVPVRGVRPDGARGAGR 634
>emb|CAB44501.1| unnamed protein product [Giardia intestinalis]
Length = 286
Score = 42.4 bits (98), Expect = 0.006
Identities = 34/89 (38%), Positives = 41/89 (45%), Gaps = 3/89 (3%)
Frame = +2
Query: 326 PRQRLRSPACTRKLTWRSGFRRTALRTTSITPLAPTPPRRLPGLPCTTSPPPIRSSTRLS 505
P R R+ AC + W +G R PL PP RLP PC +PPP + RLS
Sbjct: 89 PSARPRTWACLPVVAWPAGGAGPPCR-----PLCLDPPGRLPRAPCGPAPPPC-AHGRLS 142
Query: 506 RRRR--GRRTQTPSAPQGHRHL-QNGLCA 583
+ R G R P P GH L Q+ L A
Sbjct: 143 VQGRPGGGRALPPGHPLGHPALPQSSLSA 171
>dbj|BAC00544.1| P0489G09.12 [Oryza sativa (japonica cultivar-group)]
Length = 606
Score = 41.6 bits (96), Expect = 0.010
Identities = 31/86 (36%), Positives = 37/86 (42%), Gaps = 5/86 (5%)
Frame = +2
Query: 65 PAFVTRKWPPTRITMARRTYRR-----LSKTPY*SRTGMRIASNHKWRARQGGHYVSCLP 229
P F++ P I AR YRR L++ P R R S W A + G CLP
Sbjct: 116 PRFLSDIAPHPPIPRARSEYRRDPKNSLARRPARRRRESRSRSPADWLANRAGDSRVCLP 175
Query: 230 TSVSCTRRCPLATPGYSRPRSRQRRR 307
V C R P P S R R+RRR
Sbjct: 176 PGVGCDARVP--HPAQSLSRRRRRRR 199
Score = 31.6 bits (70), Expect = 9.9
Identities = 30/101 (29%), Positives = 39/101 (37%), Gaps = 6/101 (5%)
Frame = +2
Query: 269 PGYSRPRSRQRR--RSF*QHRPRQRLRSPACTRKLTW---RSGFRRTALRTTSITPLAPT 433
P R RS RR ++ RP +R R W R+G R L
Sbjct: 126 PPIPRARSEYRRDPKNSLARRPARRRRESRSRSPADWLANRAGDSRVCLP---------- 175
Query: 434 PPRRLPGLPCTTSPP-PIRSSTRLSRRRRGRRTQTPSAPQG 553
PG+ C P P +S +R RRRRG + P A +G
Sbjct: 176 -----PGVGCDARVPHPAQSLSRRRRRRRGEMGEPPPAGEG 211
