KCC001232A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001232A_C01 KCC001232A_c01
ctCACGAATGCCCTGTTAATACCACCAAGCCGCTCTGAGGAGCTGCTGACGTCAAGGCGC
GTCGCCAAACTTCGCGAGGCCGTAACCTGGCGTCACCCATCACCCAGACCAGCGCGCCCG
TCACACCAGCCACCATGTCTTCCACCATCGCCGCCTCCTCCCCTTCCTTGCCATGCCCCT
ACGTGACCACCGTCGTCCGGCCCGGCGGCATCGCCGTCGTCACCATGGCCAAGGAGCCCG
TCAACAGCATGGACCTGGCCATGTGGCGCGGCCTTGATGCCGCCCTCCAATCACTTGAAG
CCGACCCCTCGGTGGTGGCCGTCGTCTTCACCTCGGGCCTGCGCCGCGACGTCTTCTCCG
CCGGCAACGACCTGCTCGAGCTGTACGCGCCCAAGACCAGCGCGGCCCGCTACGCCGAGT
TCTGGGTCGCGCAGAACGCCTTCCTGGTGCGCCTGCACCGCAGCCGCCTCGCCACGGTCG
CCGCCATCCGCGGCGCCTGCCCGGCGGGCGGCTGCGCCATCTCGCTGTGCAGCGACGTGC
GCATCATCACGCCGGAGGGCACCATGGGCTTGAACGAGGTGCAGCTGGGCATTCCCGTGC
CTAAATTCTGGGGGCTGCTGATGGGCCGCGTGATTGGGCATAAGGTGGCAGAGGGCATCT
TGCTCAGCGGGCGCATGGTGGGCGCGGCCGAGGCGGCGCAGCTAGGGTTGGTGGATGACG
TTGTGCCGGCGGCGCAGCTGATGGAGGAGGCGATGTCGCGCGCGGCAGCTGCAGCCAAGC
AGCCGCCGGCGGCGCGCGCTGCCACGAAGCTGCTGCTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001232A_C01 KCC001232A_c01
         (819 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH00762.1|AAH00762 dodecenoyl-Coenzyme A delta isomerase (3,...   137  2e-31
ref|NP_001910.1| dodecenoyl-Coenzyme A delta isomerase (3,2 tran...   137  2e-31
sp|P42126|D3D2_HUMAN 3,2-trans-enoyl-CoA isomerase, mitochondria...   137  2e-31
sp|P42125|D3D2_MOUSE 3,2-trans-enoyl-CoA isomerase, mitochondria...   135  6e-31
ref|NP_034153.2| dodecenoyl-Coenzyme A delta isomerase (3,2 tran...   134  2e-30

>gb|AAH00762.1|AAH00762 dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A
           isomerase) [Homo sapiens] gi|17939654|gb|AAH19316.1|
           Dodecenoyl-Coenzyme A delta isomerase (3,2
           trans-enoyl-Coenzyme A isomerase) [Homo sapiens]
          Length = 302

 Score =  137 bits (346), Expect = 2e-31
 Identities = 87/206 (42%), Positives = 113/206 (54%), Gaps = 2/206 (0%)
 Frame = +3

Query: 207 GIAVVTMAKEPVNSMDLAMWRGLDAALQSLEADPSVVAVVFTSGLRRDVFSAGNDLLELY 386
           G+AV+     PVNS+ L     L  +L+ LE D S   V+ TS  R  VFSAG DL E+ 
Sbjct: 56  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSD-RPGVFSAGLDLTEMC 114

Query: 387 APKTSAARYAEFWVAQNAFLVRLHRSRLATVAAIRGACPAGGCAISLCSDVRIIT--PEG 560
               S A YA +W A     +RL++S L  V+AI GACPAGGC ++L  D RI+   P  
Sbjct: 115 G--RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRY 172

Query: 561 TMGLNEVQLGIPVPKFWGLLMGRVIGHKVAEGILLSGRMVGAAEAAQLGLVDDVVPAAQL 740
            +GLNE QLGI  P +    +   IGH+ AE  L  G +   AEA Q+G+VD VVP  Q+
Sbjct: 173 CIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQV 232

Query: 741 MEEAMSRAAAAAKQPPAARAATKLLL 818
              A+S  A     P  AR  TK ++
Sbjct: 233 QSTALSAIAQWMAIPDHARQLTKAMM 258

>ref|NP_001910.1| dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A
           isomerase) [Homo sapiens] gi|472987|emb|CAA81065.1|
           dodecenoyl-CoA delta-isomerase [Homo sapiens]
          Length = 302

 Score =  137 bits (346), Expect = 2e-31
 Identities = 87/206 (42%), Positives = 113/206 (54%), Gaps = 2/206 (0%)
 Frame = +3

Query: 207 GIAVVTMAKEPVNSMDLAMWRGLDAALQSLEADPSVVAVVFTSGLRRDVFSAGNDLLELY 386
           G+AV+     PVNS+ L     L  +L+ LE D S   V+ TS  R  VFSAG DL E+ 
Sbjct: 56  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSD-RPGVFSAGLDLTEMC 114

Query: 387 APKTSAARYAEFWVAQNAFLVRLHRSRLATVAAIRGACPAGGCAISLCSDVRIIT--PEG 560
               S A YA +W A     +RL++S L  V+AI GACPAGGC ++L  D RI+   P  
Sbjct: 115 G--RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRY 172

Query: 561 TMGLNEVQLGIPVPKFWGLLMGRVIGHKVAEGILLSGRMVGAAEAAQLGLVDDVVPAAQL 740
            +GLNE QLGI  P +    +   IGH+ AE  L  G +   AEA Q+G+VD VVP  Q+
Sbjct: 173 CIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQV 232

Query: 741 MEEAMSRAAAAAKQPPAARAATKLLL 818
              A+S  A     P  AR  TK ++
Sbjct: 233 QSTALSAIAQWMAIPDHARQLTKAMM 258

>sp|P42126|D3D2_HUMAN 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor
           (Dodecenoyl-CoA delta-isomerase) gi|1082342|pir||A55723
           dodecenoyl-CoA Delta-isomerase (EC 5.3.3.8) precursor,
           mitochondrial - human gi|825689|emb|CAA81066.1|
           dodecenoyl-CoA delta-isomerase [Homo sapiens]
          Length = 302

 Score =  137 bits (346), Expect = 2e-31
 Identities = 87/206 (42%), Positives = 113/206 (54%), Gaps = 2/206 (0%)
 Frame = +3

Query: 207 GIAVVTMAKEPVNSMDLAMWRGLDAALQSLEADPSVVAVVFTSGLRRDVFSAGNDLLELY 386
           G+AV+     PVNS+ L     L  +L+ LE D S   V+ TS  R  VFSAG DL E+ 
Sbjct: 56  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSD-RPGVFSAGLDLTEMC 114

Query: 387 APKTSAARYAEFWVAQNAFLVRLHRSRLATVAAIRGACPAGGCAISLCSDVRIIT--PEG 560
               S A YA +W A     +RL++S L  V+AI GACPAGGC ++L  D RI+   P  
Sbjct: 115 G--RSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRY 172

Query: 561 TMGLNEVQLGIPVPKFWGLLMGRVIGHKVAEGILLSGRMVGAAEAAQLGLVDDVVPAAQL 740
            +GLNE QLGI  P +    +   IGH+ AE  L  G +   AEA Q+G+VD VVP  Q+
Sbjct: 173 CIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQV 232

Query: 741 MEEAMSRAAAAAKQPPAARAATKLLL 818
              A+S  A     P  AR  TK ++
Sbjct: 233 QSTALSAIAQWMAIPDHARQLTKAMM 258

>sp|P42125|D3D2_MOUSE 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor
           (Dodecenoyl-CoA delta-isomerase) gi|7513633|pir||S38770
           dodecenoyl-CoA Delta-isomerase (EC 5.3.3.8) precursor -
           mouse gi|414902|emb|CAA78417.1| dodecenoyl-CoA
           delta-isomerase [Mus musculus] gi|817974|emb|CAA78418.1|
           dodecenoyl-CoA delta isomerase [Mus musculus]
           gi|737714|prf||1923271A enoyl-CoA isomerase
          Length = 289

 Score =  135 bits (341), Expect = 6e-31
 Identities = 81/208 (38%), Positives = 118/208 (55%), Gaps = 2/208 (0%)
 Frame = +3

Query: 201 PGGIAVVTMAKEPVNSMDLAMWRGLDAALQSLEADPSVVAVVFTSGLRRDVFSAGNDLLE 380
           P G+AV+ +   PVNS+ L        +L+ LE D S+  V+ TS     +FSAG DLLE
Sbjct: 41  PAGVAVMKLRNPPVNSLSLECLTEFTISLEKLENDKSIRGVILTSECP-GIFSAGLDLLE 99

Query: 381 LYAPKTSAARYAEFWVAQNAFLVRLHRSRLATVAAIRGACPAGGCAISLCSDVRIIT--P 554
           +Y    + A YAE+W       +RL+ S +  V+AI GA PAGGC ++LC D R++   P
Sbjct: 100 MYG--RNPAHYAEYWKNVQELWLRLYTSNMILVSAINGASPAGGCLLALCCDYRVMADNP 157

Query: 555 EGTMGLNEVQLGIPVPKFWGLLMGRVIGHKVAEGILLSGRMVGAAEAAQLGLVDDVVPAA 734
           + T+GLNE  LGI  P ++  +    IGH+ A+G L  G +   AEA ++G+VD+VVP  
Sbjct: 158 KYTIGLNESLLGIVAPFWFKDMYVNTIGHREADGALQLGTLFSPAEALKVGVVDEVVPED 217

Query: 735 QLMEEAMSRAAAAAKQPPAARAATKLLL 818
           Q+  +A S        P  +R  TK ++
Sbjct: 218 QVHSKARSVMTKWLAIPDHSRQLTKNMM 245

>ref|NP_034153.2| dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A
           isomerase) [Mus musculus] gi|18490960|gb|AAH22712.1|
           Dodecenoyl-Coenzyme A delta isomerase (3,2
           trans-enoyl-Coenyme A isomerase) [Mus musculus]
           gi|26325430|dbj|BAC26469.1| unnamed protein product [Mus
           musculus] gi|32484354|gb|AAH54444.1| Dci protein [Mus
           musculus]
          Length = 289

 Score =  134 bits (336), Expect = 2e-30
 Identities = 81/208 (38%), Positives = 117/208 (55%), Gaps = 2/208 (0%)
 Frame = +3

Query: 201 PGGIAVVTMAKEPVNSMDLAMWRGLDAALQSLEADPSVVAVVFTSGLRRDVFSAGNDLLE 380
           P G+AV+ +   PVNS+ L        +L+ LE D S+  V+ TS     +FSAG DLLE
Sbjct: 41  PAGVAVMKLRNPPVNSLSLECLTEFTISLEKLENDKSIRGVILTSECP-GIFSAGLDLLE 99

Query: 381 LYAPKTSAARYAEFWVAQNAFLVRLHRSRLATVAAIRGACPAGGCAISLCSDVRIIT--P 554
           +Y    + A YAE+W       +RL+ S +  V+AI GA PAGGC ++LC D R++   P
Sbjct: 100 MYG--RNPAHYAEYWKNVQELWLRLYTSNMILVSAINGASPAGGCLLALCCDYRVMADNP 157

Query: 555 EGTMGLNEVQLGIPVPKFWGLLMGRVIGHKVAEGILLSGRMVGAAEAAQLGLVDDVVPAA 734
           + T+GLNE  LGI  P ++  +    IGH+ AE  L  G +   AEA ++G+VD+VVP  
Sbjct: 158 KYTIGLNESLLGIVAPFWFKDMYVNTIGHREAERALQLGTLFSPAEALKVGVVDEVVPED 217

Query: 735 QLMEEAMSRAAAAAKQPPAARAATKLLL 818
           Q+  +A S        P  +R  TK ++
Sbjct: 218 QVHSKARSVMTKWLAIPDHSRQLTKNMM 245



EST assemble image


clone accession position
1 HC045c11_r AV635354 1 450
2 HC036f05_r AV634696 3 483
3 HC096e05_r AV639220 326 819
4 CM028c12_r AV387740 372 879




Chlamydomonas reinhardtii
Kazusa DNA Research Institute