Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001230A_C01 KCC001230A_c01
(602 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_862149.1| hypothetical protein [Streptomyces violaceorube... 42 0.009
ref|XP_346836.1| hypothetical protein XP_346835 [Rattus norvegicus] 40 0.019
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 40 0.025
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 40 0.025
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 40 0.025
>ref|NP_862149.1| hypothetical protein [Streptomyces violaceoruber]
gi|28797293|gb|AAO50140.1| hypothetical protein
[Streptomyces violaceoruber]
Length = 190
Score = 41.6 bits (96), Expect = 0.009
Identities = 33/105 (31%), Positives = 41/105 (38%), Gaps = 12/105 (11%)
Frame = +3
Query: 81 RASARASTTAAMGTAT*CAPGAALCTAAGTPSRLARWSTP---------MRSTCCPSRRP 233
+ + TT G A G A AG P+R WST MR+T PS RP
Sbjct: 32 KTGPKTKTTKPAGPAAKAPVGPA----AGAPTRRTPWSTAKARARKRARMRTTTVPSPRP 87
Query: 234 RTPPGN*GPPYPHHHHASVCQDPSQDPQPVH---TRGGSSQPAQR 359
PG PP P P+ P P GG++ PA+R
Sbjct: 88 APTPGKVTPPVP-------AAPPTPTPAPASAAAVTGGATAPARR 125
>ref|XP_346836.1| hypothetical protein XP_346835 [Rattus norvegicus]
Length = 3905
Score = 40.4 bits (93), Expect = 0.019
Identities = 41/148 (27%), Positives = 58/148 (38%), Gaps = 4/148 (2%)
Frame = +3
Query: 93 RASTTAAMGTAT*CAPGAALCTAAGTPSRLARWSTPMRSTCCPSRRPRTPPGN*GPPYPH 272
R S T A TA A AA TA T + W+T + T P N H
Sbjct: 3765 RHSITPATDTAA-AAAAAAAATATATAATARSWATSSPAGSITGSATATEPAN------H 3817
Query: 273 HHHASVCQDPSQDPQPVHTRGGSSQPAQRERS*LTQEAGEARAGCM*Q*LKTLTRQRQ*G 452
H+ CQ PS++ S++P R+ ++ A RAG + L+T ++ G
Sbjct: 3818 PEHSPCCQPPSRET--------STRPHHSPRAPASRTA-TCRAG---RQLQTGSQSAPAG 3865
Query: 453 TGTEGLVRARRC----GQAGWGDSSAQC 524
+ G V +R C WGD C
Sbjct: 3866 ARSSGPVSSRTCRGEDWSQAWGDPRGSC 3893
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 40.0 bits (92), Expect = 0.025
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -1
Query: 245 RRRPRP---PTWAAGTPHRGRPPCKS*WCPSRRTQSGPRRASGSSAHRRGSRSSCTCSWQ 75
RRRP P P+ TP R PP RR++S RR SSA GS SS + S
Sbjct: 310 RRRPSPRRRPSPRRRTPPRRMPPPPR----HRRSRSPGRRRRRSSASLSGSSSSSSSSRS 365
Query: 74 CTPPRRPP 51
+PP++PP
Sbjct: 366 RSPPKKPP 373
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 40.0 bits (92), Expect = 0.025
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -1
Query: 245 RRRPRP---PTWAAGTPHRGRPPCKS*WCPSRRTQSGPRRASGSSAHRRGSRSSCTCSWQ 75
RRRP P P+ TP R PP RR++S RR SSA GS SS + S
Sbjct: 312 RRRPSPRRRPSPRRRTPPRRMPPPPR----HRRSRSPVRRRRRSSASLSGSSSSSSSSRS 367
Query: 74 CTPPRRPP 51
+PP++PP
Sbjct: 368 RSPPKKPP 375
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 40.0 bits (92), Expect = 0.025
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -1
Query: 245 RRRPRP---PTWAAGTPHRGRPPCKS*WCPSRRTQSGPRRASGSSAHRRGSRSSCTCSWQ 75
RRRP P P+ TP R PP RR++S RR SSA GS SS + S
Sbjct: 369 RRRPSPRRRPSPRRRTPPRRMPPPPR----HRRSRSPGRRRRRSSASLSGSSSSSSSSRS 424
Query: 74 CTPPRRPP 51
+PP++PP
Sbjct: 425 RSPPKKPP 432
