KCC001216A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001216A_C01 KCC001216A_c01
gaattcttTACGAGAATCCTCCCGCGCCCCTAACAAAAATGCTGGCCGTTAAGCCCATCA
ACGTTGTGGCTCCTTCGGGTGCTCGCCCCGCGCCTGTGGCGATGCTCCGGCCTCTGGCTA
GCTCTCGCGCCGAGCGGACGGTTGTGGCTTCGGCTTCGTCGGTCGCGCCCAAGGCTGTGT
CTCGTCGCCAGGTGCTGTGCCAGGCGCAGACCGGCACCAAGCCCGCCCAGGCTGCTACTT
CAGCAGGCCGAATACATCGAGCTTGGACCTGCCCAAGCCTCTGGGCTTCAAGTTCGCTCG
CGGTAACGACGGTGGTGCCTACATCATTGAAGTGAACCCCAAGGCCGGCAACATCGATGC
CCGCGTGCAGCCCGGTGATAAGATCGTGGAGATCAGCGCCTCGTTCGGCTCTGAGGTCTG
GAAGGCCGAGAACTTCGGCCAGATCATGTACGCCATCCGCACCCGCAGCGGCACTGTGTA
CATGAAGCTGAAGAAGAACTACGGCGACCTGTCCGCGCTGGAGGAGGAGGGCCTGGACGC
GGCTGAGAAGCAATGGAAGAAGGAGCGCGCCGGCGGCAACTACGGCGCTGGCACGAAGGA
GATCCAGGCGCGTAACTACGTGCAGCGCAAGGAGAACGAGCGCAAGCGTCGCGAGATGTT
CGACGATGCTCTGGCCAAGTTCAAGGAGAACGACATCCAGGGCGCCCTGGTGGAGTTCGA
GAACATCATCGCCATGGAGCCCCGCAACTTCGTGGGCGACAACTTCTCGCGCAACACCCC
CATCTACAAGGTCACCCAGTACAACATCGCCTGCTGCTACAGCATGCTGGACCAGGTTGA
GGAGGCCATCAAGTCGTTGGACGCGGCCATGCTGTCGGGCTTCGACAACTACGACCAGAT
CCGCCGGGACAAGAACCTGTCCAAGGCCCGCGCCAACCCCAAGTTCCAGGCCGTGCTCGA
CAAGTACGACGAGCCCGTAGTGAACTGGAACGCCGTGAAGGCCACCTTCGGCGCCTTCGG
CAACATGTTCAACAAGGAGAAGTAAACAAACTCAATTCAATAGCATTGGCGGGCGGGCGA
GGCGCGATGGAGCTAGGAAATGGCGTGCGCGGGCTGCAGATTTTGGCGCGTGGATTGCAG
TTCGTGCGGGTTCGACCTAACACAAAAGTTTTGTTCGTGGCTGGAGCGTTTGTTCGTTTG
TATGGGTCCTGATGGATGGCCCGGAGAATGCGGCGGATAGACGGGAGAGTTGCTTGGATC
GAATTCAACTGGGATGAAGGCACTACATGCAACCCGCCTTGTTAATCGTGATTTTAATTG
TTTTGCGGGGCCTGTGTTGGATCAGGTGCGGAAGTGTCATTGTGAGCGCATGAGCTCTAC
ATATGCCAGGTAGAGAGGGCCGTGGTTGCTGATGAGAGCGCGGGACCGCGGGAAAGGAGC
GCGTGCAGCGTTGCGGTCAACACACTGAGTGCAACAGTGGCTCAAGATCATTTGAGTGGA
GTGAGCGGTCCCAACCAGCTTCAATGAGGCTTATTGCTCACTGCGACTTGAGGCGTGAGC
ACGTGGTAGCATGCGGCCAGGAGGTGGACCTGCCGCGGAGAGTCTTGCCCGCTGtgtaag
acgcttaagtg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001216A_C01 KCC001216A_c01
         (1631 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC84586.1| putative SHOOT1 protein [Oryza sativa (japonica ...   166  9e-40
gb|AAF81798.1| putative tyrosine phosphatase [Oryza sativa]           160  8e-38
ref|NP_564691.1| expressed protein [Arabidopsis thaliana] gi|145...   151  3e-35
gb|AAM66135.1| unknown [Arabidopsis thaliana]                         148  3e-34
gb|AAK37555.1|AF349572_1 SHOOT1 protein [Glycine max]                 143  8e-33

>dbj|BAC84586.1| putative SHOOT1 protein [Oryza sativa (japonica cultivar-group)]
          Length = 335

 Score =  166 bits (421), Expect = 9e-40
 Identities = 91/261 (34%), Positives = 148/261 (55%), Gaps = 2/261 (0%)
 Frame = +2

Query: 263  LDLPKPLGFKFARGNDGGAYIIEVNP-KAGNIDARVQPGDKIVEISASFGSEVWKAENFG 439
            +++ KP G KFA+G DGG YI  + P  A +   + + GDK++  SA FG E+W A  +G
Sbjct: 91   VEILKPYGLKFAKGRDGGTYIEAILPGAAADQTGKFEVGDKVLATSAVFGEEIWPAAGYG 150

Query: 440  QIMYAIRTRSGTVYMKLKKNYGDLSALEEEGLDAAEKQW-KKERAGGNYGAGTKEIQARN 616
            Q MY IR R G +YMK++K +G      E     +EK+  + ER  G      +EIQ +N
Sbjct: 151  QTMYCIRQRVGPLYMKMEKRFGKWDGAAE----LSEKEIIRAERNSGVISNRVREIQLQN 206

Query: 617  YVQRKENERKRREMFDDALAKFKENDIQGALVEFENIIAMEPRNFVGDNFSRNTPIYKVT 796
            Y ++ E + +R E     L  +K+   + AL +FE+++  +P   + ++         + 
Sbjct: 207  YQRKMEQKMQREEDLRMGLRLYKDGKYEEALEKFESVLGSKPE--INES--------SIA 256

Query: 797  QYNIACCYSMLDQVEEAIKSLDAAMLSGFDNYDQIRRDKNLSKARANPKFQAVLDKYDEP 976
             YN+ACCYS LD+++  I +L+ A+ +G++++ +IR D +L   R   +F  +L+KYDE 
Sbjct: 257  SYNVACCYSKLDRIQAGISALEDALKAGYEDFKRIRTDPDLENLRKTEEFNVLLNKYDES 316

Query: 977  VVNWNAVKATFGAFGNMFNKE 1039
             +N NA+ A    FG  FNK+
Sbjct: 317  FINENAINAIKSLFG--FNKK 335

>gb|AAF81798.1| putative tyrosine phosphatase [Oryza sativa]
          Length = 240

 Score =  160 bits (404), Expect = 8e-38
 Identities = 89/254 (35%), Positives = 143/254 (56%), Gaps = 2/254 (0%)
 Frame = +2

Query: 284  GFKFARGNDGGAYIIEVNP-KAGNIDARVQPGDKIVEISASFGSEVWKAENFGQIMYAIR 460
            G KFA+G DGG YI  + P  A +   + + GDK++  SA FG E+W A  +GQ MY IR
Sbjct: 3    GPKFAKGRDGGTYIEAILPGAAADQTGKFEVGDKVLATSAVFGEEIWPAAGYGQTMYCIR 62

Query: 461  TRSGTVYMKLKKNYGDLSALEEEGLDAAEKQW-KKERAGGNYGAGTKEIQARNYVQRKEN 637
             R G +YMK++K +G      E     +EK+  + ER  G      +EIQ +NY ++ E 
Sbjct: 63   QRVGPLYMKMEKRFGKWDGAAE----LSEKEIIRAERNSGVISNRVREIQLQNYQRKMEQ 118

Query: 638  ERKRREMFDDALAKFKENDIQGALVEFENIIAMEPRNFVGDNFSRNTPIYKVTQYNIACC 817
            + +R E     L  +K+   + AL +FE+++  +P   + ++         +  YN+ACC
Sbjct: 119  KMQREEDLRMGLRLYKDGKYEEALEKFESVLGSKPE--INES--------SIASYNVACC 168

Query: 818  YSMLDQVEEAIKSLDAAMLSGFDNYDQIRRDKNLSKARANPKFQAVLDKYDEPVVNWNAV 997
            YS LD+++  I +L+ A+ +G++++ +IR D +L   R   +F  +L+KYDE  +N NA+
Sbjct: 169  YSKLDRIQAGISALEDALKAGYEDFKRIRTDPDLENLRKTEEFNVLLNKYDESFINENAI 228

Query: 998  KATFGAFGNMFNKE 1039
             A    FG  FNK+
Sbjct: 229  NAIKSLFG--FNKK 240

>ref|NP_564691.1| expressed protein [Arabidopsis thaliana] gi|14532604|gb|AAK64030.1|
            unknown protein [Arabidopsis thaliana]
            gi|19310719|gb|AAL85090.1| unknown protein [Arabidopsis
            thaliana]
          Length = 335

 Score =  151 bits (382), Expect = 3e-35
 Identities = 87/265 (32%), Positives = 146/265 (54%), Gaps = 3/265 (1%)
 Frame = +2

Query: 254  TSSLDLPKPLGFKFARGNDGGAYIIEVNPKAGNID--ARVQPGDKIVEISASFGSEVWKA 427
            T  +++ +P G KF +G DGG YI  + P  G+ D   +   GD+++  SA FG+E+W A
Sbjct: 88   TYEIEVEQPYGLKFRKGRDGGTYIDAILP-GGSADKTGKFTVGDRVIATSAVFGTEIWPA 146

Query: 428  ENFGQIMYAIRTRSGTVYMKLKKNYGDLSALEEEGLDAAEKQWKKERAGGNYGAGTKEIQ 607
              +G+ MY IR R G + M+++K  G     E+ G    ++  + ER  G   +  +EIQ
Sbjct: 147  AEYGRTMYTIRQRIGPLLMQMEKRNGKA---EDTGELTEKEIIRAERNAGYISSRLREIQ 203

Query: 608  ARNYVQRKENERKRREMFDDALAKFKENDIQGALVEFENIIAMEPRNFVGDNFSRNTPIY 787
             +NY+++KE + +R +   + L   K    + AL  FE+++  +P           TP  
Sbjct: 204  MQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKP-----------TPEE 252

Query: 788  -KVTQYNIACCYSMLDQVEEAIKSLDAAMLSGFDNYDQIRRDKNLSKARANPKFQAVLDK 964
              V  YN+ACCYS L+QV+  + +L+ A+ SG++++ +IR D +L   R +  F  +L +
Sbjct: 253  ASVASYNVACCYSKLNQVQAGLSALEEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQ 312

Query: 965  YDEPVVNWNAVKATFGAFGNMFNKE 1039
            +DE  +N +A+ A    FG  FNK+
Sbjct: 313  FDESFINESAINAIKSLFG--FNKK 335

>gb|AAM66135.1| unknown [Arabidopsis thaliana]
          Length = 335

 Score =  148 bits (373), Expect = 3e-34
 Identities = 86/265 (32%), Positives = 145/265 (54%), Gaps = 3/265 (1%)
 Frame = +2

Query: 254  TSSLDLPKPLGFKFARGNDGGAYIIEVNPKAGNID--ARVQPGDKIVEISASFGSEVWKA 427
            T  +++ +P G KF +G DGG YI  + P  G+ D   +   GD+++  SA FG+E+W A
Sbjct: 88   TYEIEVEQPYGLKFRKGRDGGTYIDAILP-GGSADKTGKFTVGDRVIATSAVFGTEIWPA 146

Query: 428  ENFGQIMYAIRTRSGTVYMKLKKNYGDLSALEEEGLDAAEKQWKKERAGGNYGAGTKEIQ 607
              +G+ MY IR R   + M+++K  G     E+ G    ++  + ER  G   +  +EIQ
Sbjct: 147  AEYGRTMYTIRQRICPLLMQMEKRNGKA---EDTGELTEKEIIRAERNAGYISSRLREIQ 203

Query: 608  ARNYVQRKENERKRREMFDDALAKFKENDIQGALVEFENIIAMEPRNFVGDNFSRNTPIY 787
             +NY+++KE + +R +   + L   K    + AL  FE+++  +P           TP  
Sbjct: 204  MQNYLKKKEQKAQREKDLREGLQFSKNGKYEEALERFESVLGSKP-----------TPEE 252

Query: 788  -KVTQYNIACCYSMLDQVEEAIKSLDAAMLSGFDNYDQIRRDKNLSKARANPKFQAVLDK 964
              V  YN+ACCYS L+QV+  + +L+ A+ SG++++ +IR D +L   R +  F  +L +
Sbjct: 253  ASVASYNVACCYSKLNQVQAGLSALEEALKSGYEDFKRIRSDPDLETLRKSKDFDPLLKQ 312

Query: 965  YDEPVVNWNAVKATFGAFGNMFNKE 1039
            +DE  +N +A+ A    FG  FNK+
Sbjct: 313  FDESFINESAINAIKSLFG--FNKK 335

>gb|AAK37555.1|AF349572_1 SHOOT1 protein [Glycine max]
          Length = 359

 Score =  143 bits (361), Expect = 8e-33
 Identities = 86/270 (31%), Positives = 142/270 (51%), Gaps = 17/270 (6%)
 Frame = +2

Query: 263  LDLPKPLGFKFARGNDGGAYIIEVNP-----KAGNIDARVQP-----------GDKIVEI 394
            +++ +P G KFA+G DGG YI  + P     KAG      Q            GDK++  
Sbjct: 97   VEIEQPFGLKFAKGRDGGTYIDAIAPGGSADKAGVFTVLHQEDQLIRLGFFTVGDKVIAT 156

Query: 395  SASFGSEVWKAENFGQIMYAIRTRSGTVYMKLKKNYGDLSALEEEGLDAAEKQW-KKERA 571
            SA FG+E+W A  +G+ MY I  ++  V + ++K   D+      G +  EK+  + ER 
Sbjct: 157  SAVFGTEIWPAAEYGRTMYTISPKNWPVKL-MEKCRRDMEKTLISGGELTEKEIIRAERN 215

Query: 572  GGNYGAGTKEIQARNYVQRKENERKRREMFDDALAKFKENDIQGALVEFENIIAMEPRNF 751
             G      +EIQ  N ++++E + +R +   + L  +K      AL +FE+I+  +P   
Sbjct: 216  SGFISNRVREIQMLNALRKREQKERREKDLREGLQLYKNGKYDEALEKFESILGSKPEPE 275

Query: 752  VGDNFSRNTPIYKVTQYNIACCYSMLDQVEEAIKSLDAAMLSGFDNYDQIRRDKNLSKAR 931
                         V  YN+ACCYS L+Q++ A+ SL+ A+ +GF+++ +IR D +L+ AR
Sbjct: 276  EA----------AVASYNVACCYSKLNQIQAALSSLEEALNTGFEDFKRIRTDPDLANAR 325

Query: 932  ANPKFQAVLDKYDEPVVNWNAVKATFGAFG 1021
            A+ +F  +L ++DE  +N NA+ A    FG
Sbjct: 326  ASEEFDPLLKRFDESFINENAINAIKSLFG 355



EST assemble image


clone accession position
1 LC092c06_r AV625419 1 548
2 LC008c11_r AV619433 84 570
3 LCL002c05_r AV626092 85 410
4 MX253b09_r BP092362 86 464
5 LC022h05_r AV620492 87 589
6 LC020d08_r AV620313 88 602
7 HC086b06_r AV638418 89 519
8 MX047h01_r BP087954 91 442
9 HC061d09_r AV636583 91 542
10 LC080h08_r AV624662 91 616
11 HC063f10_r AV636748 93 599
12 HCL015a05_r AV640366 93 376
13 CM049f05_r AV389651 93 279
14 CM097e07_r AV393220 95 624
15 LC094g06_r AV625570 100 445
16 LCL025a10_r AV627326 102 561
17 MX001g11_r BP086094 106 504
18 LCL010a10_r AV626490 106 382
19 MX209h04_r BP089568 120 425
20 HCL043g06_r AV642005 187 695
21 LCL079g10_r AV630498 201 461
22 LCL098c07_r AV631690 375 905
23 LC079e01_r AV624565 425 893
24 MX041a06_r BP087669 472 819
25 LC020e08_r AV620322 615 1132
26 LC089b11_r AV625200 690 1195
27 CM031h06_r AV388328 861 1246
28 CM026f07_r AV387523 868 1460
29 MXL056c03_r BP096300 945 1432
30 CM038d06_r AV389011 989 1348
31 LC057e03_r AV622989 1187 1691
32 MX208f01_r BP089501 1386 1708




Chlamydomonas reinhardtii
Kazusa DNA Research Institute