KCC001213A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001213A_C01 KCC001213A_c01
GAACGATGCTGGCCCGGGCAGCATGCCTCCTGGCGCGCAGCGCCGAGCAGGCGCAGCTGC
CTCAAATAATGGTCCGCACCTTCGCGGCTGCTGCTGCCGCTAAGACGGCTCCTAAGGCCG
AGATGAAGCTGCCGGTGGCTCCTCTCCAACTCAGCGGGACCTCGGGCGCGATCGCGACGC
TAGCATGGCAGGTCGCTGCGAAGGAGAACGTGCTGGCTAAGGTGCAGGACGAGCTGTACC
AGCTGGTGGAGGTCTTCAAGAGCCACCCCGAGATCCGCCGCCTGGCCACGGACCCGTTCC
TGCCTGACGCGTTCCGCCGCAAGGTGGTGCGCGATATGTTCGCCACCAAGGACGTGACCG
AGGTCACCAAGCGCCTCGTTGAGGCGCTGGCCGAGGAGAACAGCCTGAGCGCCATCGTGC
AGGTGACGCTGGCGTACGAGGAGCTGATGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001213A_C01 KCC001213A_c01
         (451 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondrial pre...    66  1e-10
dbj|BAA77508.1| F1-ATP synthase delta subunit [Ipomoea batatas]        66  1e-10
dbj|BAA13600.1| delta subunit of mitochondrial F1-ATPase [Arabid...    59  1e-08
ref|NP_196849.1| delta subunit of mitochondrial F1-ATPase [Arabi...    59  1e-08
gb|AAK55728.1|AF380647_1 AT5g13450/T22N19_100 [Arabidopsis thali...    59  1e-08

>sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondrial precursor (Oligomycin
           sensitivity conferral protein) (OSCP)
           gi|100471|pir||A35227 H+-transporting two-sector ATPase
           (EC 3.6.3.14) delta chain precursor, mitochondrial -
           sweet potato gi|168270|gb|AAA33388.1| F-1-ATPase delta
           subunit precursor (EC 3.6.1.3)
          Length = 244

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 41/126 (32%), Positives = 64/126 (50%)
 Frame = +3

Query: 69  MVRTFAAAAAAKTAPKAEMKLPVAPLQLSGTSGAIATLAWQVAAKENVLAKVQDELYQLV 248
           ++R +A A+A+K     E K+ V PL + G SG  A+  +  A K N L KV+ ELY LV
Sbjct: 41  LLRNYATASASK-----EQKIKV-PLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLV 94

Query: 249 EVFKSHPEIRRLATDPFLPDAFRRKVVRDMFATKDVTEVTKRLVEALAEENSLSAIVQVT 428
           E  K  P   +   DP +P   R   ++++ A     + T+  +  LAE   L  I ++ 
Sbjct: 95  EASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIV 154

Query: 429 LAYEEL 446
             ++EL
Sbjct: 155 KRFKEL 160

>dbj|BAA77508.1| F1-ATP synthase delta subunit [Ipomoea batatas]
          Length = 244

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 41/126 (32%), Positives = 64/126 (50%)
 Frame = +3

Query: 69  MVRTFAAAAAAKTAPKAEMKLPVAPLQLSGTSGAIATLAWQVAAKENVLAKVQDELYQLV 248
           ++R +A A+A+K     E K+ V PL + G SG  A+  +  A K N L KV+ ELY LV
Sbjct: 41  LLRNYATASASK-----EQKIKV-PLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLV 94

Query: 249 EVFKSHPEIRRLATDPFLPDAFRRKVVRDMFATKDVTEVTKRLVEALAEENSLSAIVQVT 428
           E  K  P   +   DP +P   R   ++++ A     + T+  +  LAE   L  I ++ 
Sbjct: 95  EASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIV 154

Query: 429 LAYEEL 446
             ++EL
Sbjct: 155 KRFKEL 160

>dbj|BAA13600.1| delta subunit of mitochondrial F1-ATPase [Arabidopsis thaliana]
          Length = 237

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 37/125 (29%), Positives = 61/125 (48%)
 Frame = +3

Query: 72  VRTFAAAAAAKTAPKAEMKLPVAPLQLSGTSGAIATLAWQVAAKENVLAKVQDELYQLVE 251
           +RT+A A+A  TA    +K+P+A   L G +G  A+  +  A K N L K++ +L +++E
Sbjct: 33  LRTYATASAQTTA---NVKVPIA---LVGENGNFASWLYIAAVKMNSLEKIETDLSEMIE 86

Query: 252 VFKSHPEIRRLATDPFLPDAFRRKVVRDMFATKDVTEVTKRLVEALAEENSLSAIVQVTL 431
             K+ P   +   DP +P   R   +RD        E TK  +  LAE   L  +  +  
Sbjct: 87  AMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVK 146

Query: 432 AYEEL 446
            + +L
Sbjct: 147 KFMQL 151

>ref|NP_196849.1| delta subunit of mitochondrial F1-ATPase [Arabidopsis thaliana]
           gi|22096334|sp|Q96251|ATPO_ARATH ATP synthase delta
           chain, mitochondrial precursor (Oligomycin sensitivity
           conferral protein) (OSCP) gi|11266708|pir||T48592 ATP
           synthase delta chain, mitochondrial - Arabidopsis
           thaliana gi|7543912|emb|CAB87152.1| delta subunit of
           mitochondrial F1-ATPase [Arabidopsis thaliana]
          Length = 238

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 37/125 (29%), Positives = 61/125 (48%)
 Frame = +3

Query: 72  VRTFAAAAAAKTAPKAEMKLPVAPLQLSGTSGAIATLAWQVAAKENVLAKVQDELYQLVE 251
           +RT+A A+A  TA    +K+P+A   L G +G  A+  +  A K N L K++ +L +++E
Sbjct: 33  LRTYATASAQTTA---NVKVPIA---LVGENGNFASWLYIAAVKMNSLEKIETDLSEMIE 86

Query: 252 VFKSHPEIRRLATDPFLPDAFRRKVVRDMFATKDVTEVTKRLVEALAEENSLSAIVQVTL 431
             K+ P   +   DP +P   R   +RD        E TK  +  LAE   L  +  +  
Sbjct: 87  AMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVK 146

Query: 432 AYEEL 446
            + +L
Sbjct: 147 KFMQL 151

>gb|AAK55728.1|AF380647_1 AT5g13450/T22N19_100 [Arabidopsis thaliana]
           gi|15809744|gb|AAL06800.1| AT5g13450/T22N19_100
           [Arabidopsis thaliana]
          Length = 238

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 37/125 (29%), Positives = 61/125 (48%)
 Frame = +3

Query: 72  VRTFAAAAAAKTAPKAEMKLPVAPLQLSGTSGAIATLAWQVAAKENVLAKVQDELYQLVE 251
           +RT+A A+A  TA    +K+P+A   L G +G  A+  +  A K N L K++ +L +++E
Sbjct: 33  LRTYATASAQTTA---NVKVPIA---LVGENGNFASWLYIAAVKMNSLEKIETDLSEMIE 86

Query: 252 VFKSHPEIRRLATDPFLPDAFRRKVVRDMFATKDVTEVTKRLVEALAEENSLSAIVQVTL 431
             K+ P   +   DP +P   R   +RD        E TK  +  LAE   L  +  +  
Sbjct: 87  AMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVK 146

Query: 432 AYEEL 446
            + +L
Sbjct: 147 KFMQL 151



EST assemble image


clone accession position
1 MX221e05_r BP090282 1 525
2 HC016a05_r AV633044 29 454
3 CM026d12_r AV387528 46 608
4 HC028e03_r AV634041 64 556




Chlamydomonas reinhardtii
Kazusa DNA Research Institute