KCC001194A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001194A_C01 KCC001194A_c01
ccgaagtatctCACGAACTTACCTGCTTGATTGCATTCAAACGTGTACCACACCTTTGAC
TTCCGCAGAGTCTGCACAACATGCTTTCTCTCCGAGCCAACGCCTCGTCGCGCGTCGCAG
GCCGGCTGAATACTCGGGATGTGGCGGTCTGTCGTCGGCCCGCGCTTCTCCTGCCAGCCT
CGCGGCCCCGCAGCAGCCACGTGTCGCACAGCATGGGCAAGGATGTCGTTGACGGCTGGT
TGGATGTGGCCAAGCTGGTAGCGGGCGGTGGCGGCAACAAGACGCCGTACGAGGAGTTCG
CGGGCGCCATTGGTCGGGACATCTATGTGGACATCGCGGGCTGGCACCTGTACCTGCGGG
ACATGGGTACGGGCGTCCCCGGCAGCAGCTACAAGATGAGCCAGGCGCTGGCGCAGCAGC
TGGGGCCTCAGCTGCCCAAAGGAGTGCGGGAGGCTGACGTGGAGGCCCTGCTCAAGAAGA
TCCCGGTCAAGCTGGGCGCGGGCAAGATCAAGGCCTCGCTGTACGACGTGATGCCGGCCA
TGTGTGTGGGGCGACTGGCGAAGCTGTGTGAGGACTCGCGCGCCGGTAAAAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001194A_C01 KCC001194A_c01
         (592 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB82029.1| unknown [Synechococcus sp. PCC 7942]                    67  2e-10
ref|ZP_00073409.1| hypothetical protein [Trichodesmium erythraeu...    62  6e-09
ref|NP_487428.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    60  2e-08
ref|ZP_00106571.1| hypothetical protein [Nostoc punctiforme]           57  2e-07
ref|NP_439995.1| unknown protein [Synechocystis sp. PCC 6803] gi...    55  9e-07

>gb|AAB82029.1| unknown [Synechococcus sp. PCC 7942]
          Length = 102

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 39/96 (40%), Positives = 55/96 (56%), Gaps = 1/96 (1%)
 Frame = +3

Query: 291 EEFAGAIGRDIYVDIAGWHLYLRDMGTGVPGSSYKMSQALAQQLGPQLPKG-VREADVEA 467
           E+ A  IG  IY+DIA WHLYL D          K+S+ LA+ L P L +G + E  V  
Sbjct: 11  EQLAAEIGDQIYLDIAQWHLYLDDA---------KLSRRLAELLLPSLEQGQIDENTVMT 61

Query: 468 LLKKIPVKLGAGKIKASLYDVMPAMCVGRLAKLCED 575
            L + PVK+G G+ + SL D++P  CV  L ++ E+
Sbjct: 62  TLSQFPVKVGGGRRQISLLDLIPMSCVTALIEILEE 97

>ref|ZP_00073409.1| hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 102

 Score = 62.0 bits (149), Expect = 6e-09
 Identities = 37/98 (37%), Positives = 53/98 (53%), Gaps = 1/98 (1%)
 Frame = +3

Query: 291 EEFAGAIGRDIYVDIAGWHLYLRDMGTGVPGSSYKMSQALAQQLGPQLPKGV-READVEA 467
           E  A  IG  +Y+DI GWHLYL D          K+   LA++  P L + V  EA V  
Sbjct: 11  ESLAAEIGDKVYMDITGWHLYLSDA---------KLHLNLAEKFYPILTEEVPSEAQVME 61

Query: 468 LLKKIPVKLGAGKIKASLYDVMPAMCVGRLAKLCEDSR 581
           +L+ +PVKLGAG+ +  L D++P  C   L ++  + R
Sbjct: 62  ILQGVPVKLGAGRKQVPLIDLLPIHCQSDLMEVLAEFR 99

>ref|NP_487428.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25333571|pir||AE2229
           hypothetical protein alr3388 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17132483|dbj|BAB75087.1|
           ORF_ID:alr3388~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 102

 Score = 60.5 bits (145), Expect = 2e-08
 Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 1/95 (1%)
 Frame = +3

Query: 291 EEFAGAIGRDIYVDIAGWHLYLRDMGTGVPGSSYKMSQALAQQLGPQL-PKGVREADVEA 467
           E  A  IG  +Y+DIA WHLYL D          K+   +A+QL P +    V E  V  
Sbjct: 11  EALAAEIGESVYIDIAKWHLYLADA---------KLHTVVAEQLYPLITSNSVHEDRVIK 61

Query: 468 LLKKIPVKLGAGKIKASLYDVMPAMCVGRLAKLCE 572
           +L+ IPVK+G G+ +  L D++P  C   L  + E
Sbjct: 62  VLESIPVKIGGGRRELPLIDLLPLQCQVSLVDILE 96

>ref|ZP_00106571.1| hypothetical protein [Nostoc punctiforme]
          Length = 102

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 33/95 (34%), Positives = 50/95 (51%), Gaps = 1/95 (1%)
 Frame = +3

Query: 291 EEFAGAIGRDIYVDIAGWHLYLRDMGTGVPGSSYKMSQALAQQLGPQL-PKGVREADVEA 467
           E  A  IG ++Y+DIA WHLYL         S+ K+   +A++L P +    V E  V  
Sbjct: 11  EALAAEIGENVYIDIAKWHLYL---------SNAKLHTLVAERLYPLITSNSVNEDQVLK 61

Query: 468 LLKKIPVKLGAGKIKASLYDVMPAMCVGRLAKLCE 572
           +L+ I VK+G G+ +  L D++P  C   L  + E
Sbjct: 62  VLESISVKIGGGRSEIPLIDLLPLQCQVNLVDILE 96

>ref|NP_439995.1| unknown protein [Synechocystis sp. PCC 6803] gi|7452246|pir||S74523
           hypothetical protein slr0729 - Synechocystis sp. (strain
           PCC 6803) gi|1651747|dbj|BAA16675.1|
           ORF_ID:slr0729~unknown protein [Synechocystis sp. PCC
           6803]
          Length = 101

 Score = 54.7 bits (130), Expect = 9e-07
 Identities = 34/96 (35%), Positives = 50/96 (51%), Gaps = 1/96 (1%)
 Frame = +3

Query: 291 EEFAGAIGRDIYVDIAGWHLYLRDMGTGVPGSSYKMSQALAQQLGPQLPKG-VREADVEA 467
           E  A  IG  I +D+A W+L+L +    +P         LA+++ P L K  +  A VEA
Sbjct: 9   EALAADIGEQIAIDVAKWNLFLAEAHLHIP---------LAERVYPLLEKDELGRAGVEA 59

Query: 468 LLKKIPVKLGAGKIKASLYDVMPAMCVGRLAKLCED 575
            LK + V +G GK+  SL D + +  V RL  L E+
Sbjct: 60  ALKDLSVAIGGGKVNISLLDALSSTMVNRLLTLLEE 95



EST assemble image


clone accession position
1 HC051c09_r AV635812 1 454
2 CM025a12_r AV388089 12 605
3 MX010f09_r BP086523 32 453




Chlamydomonas reinhardtii
Kazusa DNA Research Institute