KCC001190A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001190A_C01 KCC001190A_c01
gtgtgacatacaatcgttcggagcttagtgaccAAGCGGTGTCCTGCGTTCCCAGCTTTG
TTCGTTGCCCTCCATGGCTGTCTCGCTCCGCGCTTCTGCGTGCTCAGCACTCATCAAGGG
CAGTGCTCGCATCTCTCGCCCTGCTGTGTCTGTTGCGCCCGTTAGTCGCTCGACCACCGT
TAGCGTGCGCGCCATGTCGGCCAAGGAGGTCATCTCCACAGACGGTGCGCCCGCCGCGCT
GGGCCCCTACTCCCAGGCCATCAAGGCCGGCAACACCGTTTATGTGTCTGGCCAGATCGG
CATCGTGCCAGGCACCAAGGACTTCGCCGCGCCGGACGTGGAGGGCCAGACGCACCAGGT
GCTGAAGAACATGGGCGCCATCCTCAAGGCCGCGGGCGCTGACTACAAGGATGTGGTGAA
GACCACCATCCTGCTGGCCGACATCGCGGACTTCGCCAAGGTCAACGCCGTCTAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001190A_C01 KCC001190A_c01
         (475 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_188674.1| translational inhibitor protein -related [Arabi...   129  2e-29
dbj|BAB02821.1| contains similarity to protein translation inhib...   127  9e-29
dbj|BAC20708.1| putative translational inhibitor protein [Oryza ...   119  1e-26
dbj|BAC66487.1| translation-inhibitor protein [Gentiana triflora]     118  4e-26
ref|NP_741177.1| endoribonuclease precursor (3H299) [Caenorhabdi...   116  2e-25

>ref|NP_188674.1| translational inhibitor protein -related [Arabidopsis thaliana]
           gi|14030711|gb|AAK53030.1|AF375446_1 AT3g20390/MQC12_15
           [Arabidopsis thaliana] gi|16974537|gb|AAL31178.1|
           AT3g20390/MQC12_15 [Arabidopsis thaliana]
           gi|21554167|gb|AAM63246.1| translational inhibitor
           protein, putative [Arabidopsis thaliana]
          Length = 187

 Score =  129 bits (323), Expect = 2e-29
 Identities = 75/147 (51%), Positives = 95/147 (64%)
 Frame = +2

Query: 35  SGVLRSQLCSLPSMAVSLRASACSALIKGSARISRPAVSVAPVSRSTTVSVRAMSAKEVI 214
           S  LRS    L +  V     A  +L + S+R        +P   S +VS  ++  KEV+
Sbjct: 17  STALRSTRTPLVAAGVGCATFAGVSLFRMSSR--------SPPFASLSVSASSVK-KEVV 67

Query: 215 STDGAPAALGPYSQAIKAGNTVYVSGQIGIVPGTKDFAAPDVEGQTHQVLKNMGAILKAA 394
           ST+ APAALGPYSQAIKA N V++SG +G++P T  F +  VE QT QVLKNMG ILKA+
Sbjct: 68  STEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKAS 127

Query: 395 GADYKDVVKTTILLADIADFAKVNAVY 475
           GADY  VVKTTI+LAD+ADF  VN +Y
Sbjct: 128 GADYSSVVKTTIMLADLADFKTVNEIY 154

>dbj|BAB02821.1| contains similarity to protein translation
           inhibitor~gene_id:MQC12.17 [Arabidopsis thaliana]
          Length = 143

 Score =  127 bits (318), Expect = 9e-29
 Identities = 66/109 (60%), Positives = 82/109 (74%)
 Frame = +2

Query: 149 SVAPVSRSTTVSVRAMSAKEVISTDGAPAALGPYSQAIKAGNTVYVSGQIGIVPGTKDFA 328
           S +P   S +VS  ++  KEV+ST+ APAALGPYSQAIKA N V++SG +G++P T  F 
Sbjct: 3   SRSPPFASLSVSASSVK-KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFV 61

Query: 329 APDVEGQTHQVLKNMGAILKAAGADYKDVVKTTILLADIADFAKVNAVY 475
           +  VE QT QVLKNMG ILKA+GADY  VVKTTI+LAD+ADF  VN +Y
Sbjct: 62  SESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIY 110

>dbj|BAC20708.1| putative translational inhibitor protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 180

 Score =  119 bits (299), Expect = 1e-26
 Identities = 67/133 (50%), Positives = 82/133 (61%)
 Frame = +2

Query: 77  AVSLRASACSALIKGSARISRPAVSVAPVSRSTTVSVRAMSAKEVISTDGAPAALGPYSQ 256
           A  LR    + L + S  ++         S ST     A   KE + T+ APAALGPYSQ
Sbjct: 18  AAELRLPLAAGLGRASFAVTGRLRRAVSASLSTAA---AAVKKEAVQTEKAPAALGPYSQ 74

Query: 257 AIKAGNTVYVSGQIGIVPGTKDFAAPDVEGQTHQVLKNMGAILKAAGADYKDVVKTTILL 436
           AIKA N V+VSG +G+ P T  F +  VE QT QV+KNMG ILKA+GA Y  VVKTTI+L
Sbjct: 75  AIKANNMVFVSGVLGLNPETGKFVSESVEEQTEQVMKNMGEILKASGASYSSVVKTTIML 134

Query: 437 ADIADFAKVNAVY 475
           AD+ DF KVN +Y
Sbjct: 135 ADLQDFKKVNEIY 147

>dbj|BAC66487.1| translation-inhibitor protein [Gentiana triflora]
          Length = 188

 Score =  118 bits (295), Expect = 4e-26
 Identities = 57/91 (62%), Positives = 70/91 (76%)
 Frame = +2

Query: 203 KEVISTDGAPAALGPYSQAIKAGNTVYVSGQIGIVPGTKDFAAPDVEGQTHQVLKNMGAI 382
           KE + T+ APAALGPYSQAIK+ N V+VSG +G++P T  F +  VE QT QV+KNMG I
Sbjct: 65  KEAVKTEKAPAALGPYSQAIKSNNLVFVSGVLGLIPETGKFVSDSVEEQTEQVMKNMGEI 124

Query: 383 LKAAGADYKDVVKTTILLADIADFAKVNAVY 475
           LKA+GA Y  VVKTTI+LAD+ DF KVN +Y
Sbjct: 125 LKASGASYSSVVKTTIMLADLNDFKKVNDIY 155

>ref|NP_741177.1| endoribonuclease precursor (3H299) [Caenorhabditis elegans]
           gi|1353163|sp|Q10121|YSD2_CAEEL Hypothetical protein
           C23G10.2 in chromosome III precursor
           gi|7496338|pir||T15580 hypothetical protein C23G10.2 -
           Caenorhabditis elegans gi|9802867|gb|AAF99878.1|
           Hypothetical protein C23G10.2a [Caenorhabditis elegans]
          Length = 185

 Score =  116 bits (290), Expect = 2e-25
 Identities = 58/105 (55%), Positives = 77/105 (73%)
 Frame = +2

Query: 161 VSRSTTVSVRAMSAKEVISTDGAPAALGPYSQAIKAGNTVYVSGQIGIVPGTKDFAAPDV 340
           V R+  + +     +++IS+  AP A+GPYSQA++AGNT+Y+SG +G+ P T D     V
Sbjct: 41  VKRTKVLDMAQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVV 100

Query: 341 EGQTHQVLKNMGAILKAAGADYKDVVKTTILLADIADFAKVNAVY 475
           E QTHQ LKN+G +LKAAGADY +VVKTT+LL +IADFA VN VY
Sbjct: 101 E-QTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVY 144



EST assemble image


clone accession position
1 HC050e02_r AV635754 1 475
2 CM024g02_r AV388238 27 584




Chlamydomonas reinhardtii
Kazusa DNA Research Institute