Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001189A_C01 KCC001189A_c01
(1043 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA qual... 169 6e-55
ref|NP_294986.1| ribonucleoprotein Ro/SS-A-related protein [Dein... 179 2e-54
sp|P10155|RO60_HUMAN 60-kDa SS-A/Ro ribonucleoprotein (60 kDa Ro... 160 3e-52
ref|NP_004591.2| 60kD Ro/SSA autoantigen; ribonucleoprotein auto... 160 3e-52
gb|AAO47002.1| gastric cancer multi-drug resistance protein vari... 157 2e-51
>ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA quality control checkpoint
(72.8 kD) (rop-1) [Caenorhabditis elegans]
gi|12643738|sp|Q27274|RO60_CAEEL 60-kDa SS-A/Ro
ribonucleoprotein homolog gi|7511637|pir||T19225 Ro
autoantigen 60K homolog - Caenorhabditis elegans
gi|784872|gb|AAC41575.1| Ro ribonucleoprotein autoantigen
gi|905359|gb|AAA96949.1| ribonucleoprotein Ro autoantigen
homolog gi|3874263|emb|CAA98241.1| C. elegans ROP-1
protein (corresponding sequence C12D8.11) [Caenorhabditis
elegans] gi|3880715|emb|CAA16325.1| C. elegans ROP-1
protein (corresponding sequence C12D8.11) [Caenorhabditis
elegans] gi|1586552|prf||2204248A 60kD Ro autoantigen
Length = 643
Score = 169 bits (428), Expect(2) = 6e-55
Identities = 87/190 (45%), Positives = 118/190 (61%)
Frame = +1
Query: 421 ALEDAFYLAFKNVVPTGKRYLLGLDVSGSMGCANCSGMTSLTARQAAAAVVMTLVRTEPW 600
ALE FY AF N PTGKRY L LDVSGSM S + L+ R+AA + + + E
Sbjct: 456 ALEAGFYKAFVNAPPTGKRYCLALDVSGSMTSRVSS--SPLSCREAATGMSLINLHNEAE 513
Query: 601 VKTMAFSHQLVEFDVRESDRLEEVVRRAERIPMGGTDCALPMIYATEKQLPVDVFVVLTD 780
V+ +AF +L E + ++ +V + G TDC LPM +ATE L DVF++ TD
Sbjct: 514 VRCVAFCDKLTELPFTKDWKIGQVNDYVNNLDFGRTDCGLPMTWATENNLKFDVFIIYTD 573
Query: 781 NETWFGGVHPTEALKRYRTAMKMPDAKLVVLAFSVNDFSIADPKDPGMLDVAGLDSAVPR 960
N+TW G +HP EA+K+YR A + DAK++V+A D+SIADP D GMLD+ G DSAVP+
Sbjct: 574 NDTWAGEIHPFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVPQ 633
Query: 961 VVADFARGGV 990
+V +F G +
Sbjct: 634 IVHEFVTGKI 643
Score = 68.6 bits (166), Expect(2) = 6e-55
Identities = 40/126 (31%), Positives = 62/126 (48%)
Frame = +3
Query: 15 EEQEEEADPQVVAQHEAATAAAVESALTLIRRHRFGHEHVGDTVLLRNPAVWGAFLENGM 194
+E++ A V A + + E + I++H EH+ T L + VW + M
Sbjct: 324 KEEQSRALNLVEAYLKLKNEQSEEVIVAAIKKHGLVREHL-PTTSLNSKLVWETLFDVSM 382
Query: 195 PLTAMIRNLGRMSELGLLVQPSYQKRVTDRLRDAKALTAARVHPMTLLDAMCTYRNGGGA 374
P+TAMIRNL +M+ +G L + + RL D + L +R+HP+ LL A Y G G
Sbjct: 383 PMTAMIRNLAKMTVVGALDEKRVD-NIVKRLTDQEELRRSRIHPINLLTARAVYAQGRGD 441
Query: 375 RGKARW 392
+G W
Sbjct: 442 KGSLTW 447
>ref|NP_294986.1| ribonucleoprotein Ro/SS-A-related protein [Deinococcus radiodurans]
gi|9978796|sp|Q9RUW8|RO60_DEIRA 60-kDa SS-A/Ro
ribonucleoprotein homolog (Ro sixty related)
gi|7473792|pir||C75418 ribonucleoprotein Ro/SS-A-related
protein - Deinococcus radiodurans (strain R1)
gi|6459007|gb|AAF10833.1|AE001973_6 ribonucleoprotein
Ro/SS-A-related protein [Deinococcus radiodurans]
Length = 531
Score = 179 bits (453), Expect(2) = 2e-54
Identities = 96/191 (50%), Positives = 125/191 (65%), Gaps = 1/191 (0%)
Frame = +1
Query: 421 ALEDAFYLAFKNVVPTGKRYLLGLDVSGSMGCANCSGMTSLTARQAAAAVVMTLVRTEPW 600
ALE+AF LAF NV P R+LL LDVSGSM C + +G+ LT AAAA+ + +RTEP
Sbjct: 343 ALEEAFTLAFGNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPD 402
Query: 601 VKTMAFSHQLVEFDVRESDRLEEVVRRAERIPMGGTDCALPMIYATEKQLPVDVFVVLTD 780
TM F+ Q + D LE +++A+ + GGTDCA P+++A +++L VD FVV TD
Sbjct: 403 ALTMGFAEQFRPLGITPRDTLESAMQKAQSMSFGGTDCAQPILWAAQERLDVDTFVVYTD 462
Query: 781 NETWFGGVHPTEALKRYRTAMKMPDA-KLVVLAFSVNDFSIADPKDPGMLDVAGLDSAVP 957
NETW G VHPT AL +Y A KM A KL+V+ + +FSIADP+ MLDV G D+A P
Sbjct: 463 NETWAGQVHPTVALDQY--AQKMGRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAP 520
Query: 958 RVVADFARGGV 990
V+ FARG V
Sbjct: 521 NVMTAFARGEV 531
Score = 57.0 bits (136), Expect(2) = 2e-54
Identities = 42/121 (34%), Positives = 62/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 42 QVVAQHEAATAAAVESALT-LIRRHRFGHEHVGDTVLLRNPAVWGAFLE-NGMPLTAMIR 215
+V+ H AT A ++A L++ +R E V V R V+ A ++ NG LT ++R
Sbjct: 218 RVIEGHLKATEAQTDAAAAALMQEYRLPLEAVPTHV--RGAEVYRAAMQTNG--LTWLLR 273
Query: 216 NLGRMSELGLLV--QPSYQKRVTDRLRDAKALTAARVHPMTLLDAMCTYRNGGGARGKAR 389
NLG + +G+L + + V +RL D AL R+HP+ L A Y G G RGK
Sbjct: 274 NLGNLGRVGVLTPNDSATVQAVIERLTDPAALKRGRIHPLDALKARLVYAQGQGVRGKGT 333
Query: 390 W 392
W
Sbjct: 334 W 334
>sp|P10155|RO60_HUMAN 60-kDa SS-A/Ro ribonucleoprotein (60 kDa Ro protein) (60 kDa
ribonucleoprotein Ro) (RoRNP) (Ro 60 kDa autoantigen)
(Sjogren syndrome type A antigen) (SS-A) (Sjogren
syndrome antigen A2) gi|86722|pir||A31760 Ro/SS-A
complex, 60K ribonucleoprotein - human
gi|177783|gb|AAA35493.1| Ro ribonucleoprotein
Length = 538
Score = 160 bits (404), Expect(2) = 3e-52
Identities = 88/185 (47%), Positives = 115/185 (61%)
Frame = +1
Query: 421 ALEDAFYLAFKNVVPTGKRYLLGLDVSGSMGCANCSGMTSLTARQAAAAVVMTLVRTEPW 600
AL+ AFY FK V PTGKR+LL +DVS SM + L A AAA+ M + RTE
Sbjct: 352 ALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSI--LNASTVAAAMCMVVTRTEKD 409
Query: 601 VKTMAFSHQLVEFDVRESDRLEEVVRRAERIPMGGTDCALPMIYATEKQLPVDVFVVLTD 780
+AFS ++V V L++V+ +IP GGTDC+LPMI+A + P DVF+V TD
Sbjct: 410 SYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTD 469
Query: 781 NETWFGGVHPTEALKRYRTAMKMPDAKLVVLAFSVNDFSIADPKDPGMLDVAGLDSAVPR 960
NET+ GGVHP AL+ YR M +P AKL+V + N F+IADP D GMLD+ G D+
Sbjct: 470 NETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALD 528
Query: 961 VVADF 975
V+ +F
Sbjct: 529 VIRNF 533
Score = 68.9 bits (167), Expect(2) = 3e-52
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 99 LIRRHRFGHEHVGDTVLLRNPAVWGAFLENGMPLTAMIRNLGRMSELGLLVQPSYQ-KRV 275
LI HR EH+ T L++ VW A L+ MPLTA++RNLG+M+ +L + + V
Sbjct: 247 LIEEHRLVREHLL-TNHLKSKEVWKALLQE-MPLTALLRNLGKMTANSVLEPGNSEVSLV 304
Query: 276 TDRLRDAKALTAARVHPMTLLDAMCTYRNGGGARGKARW 392
++L + K L AR+HP +L A+ TY+ G G RGK +W
Sbjct: 305 CEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKW 343
>ref|NP_004591.2| 60kD Ro/SSA autoantigen; ribonucleoprotein autoantigen SS-A/Ro;
gastric cancer multi-drug resistance protein [Homo
sapiens] gi|12314147|emb|CAC17589.1| bA101E13.2 (Sjogren
syndrome antigen A2 (60kD, ribonucleoprotein autoantigen
SS-A/Ro)) [Homo sapiens] gi|22478036|gb|AAH36658.1| 60kD
Ro/SSA autoantigen [Homo sapiens]
Length = 538
Score = 160 bits (404), Expect(2) = 3e-52
Identities = 88/185 (47%), Positives = 115/185 (61%)
Frame = +1
Query: 421 ALEDAFYLAFKNVVPTGKRYLLGLDVSGSMGCANCSGMTSLTARQAAAAVVMTLVRTEPW 600
AL+ AFY FK V PTGKR+LL +DVS SM + L A AAA+ M + RTE
Sbjct: 352 ALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSI--LNASTVAAAMCMVVTRTEKD 409
Query: 601 VKTMAFSHQLVEFDVRESDRLEEVVRRAERIPMGGTDCALPMIYATEKQLPVDVFVVLTD 780
+AFS ++V V L++V+ +IP GGTDC+LPMI+A + P DVF+V TD
Sbjct: 410 SYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTD 469
Query: 781 NETWFGGVHPTEALKRYRTAMKMPDAKLVVLAFSVNDFSIADPKDPGMLDVAGLDSAVPR 960
NET+ GGVHP AL+ YR M +P AKL+V + N F+IADP D GMLD+ G D+
Sbjct: 470 NETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALD 528
Query: 961 VVADF 975
V+ +F
Sbjct: 529 VIRNF 533
Score = 68.9 bits (167), Expect(2) = 3e-52
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 99 LIRRHRFGHEHVGDTVLLRNPAVWGAFLENGMPLTAMIRNLGRMSELGLLVQPSYQ-KRV 275
LI HR EH+ T L++ VW A L+ MPLTA++RNLG+M+ +L + + V
Sbjct: 247 LIEEHRLVREHLL-TNHLKSKEVWKALLQE-MPLTALLRNLGKMTANSVLEPGNSEVSLV 304
Query: 276 TDRLRDAKALTAARVHPMTLLDAMCTYRNGGGARGKARW 392
++L + K L AR+HP +L A+ TY+ G G RGK +W
Sbjct: 305 CEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKW 343
>gb|AAO47002.1| gastric cancer multi-drug resistance protein variant [Homo sapiens]
Length = 534
Score = 157 bits (396), Expect(2) = 2e-51
Identities = 86/176 (48%), Positives = 111/176 (62%)
Frame = +1
Query: 421 ALEDAFYLAFKNVVPTGKRYLLGLDVSGSMGCANCSGMTSLTARQAAAAVVMTLVRTEPW 600
AL+ AFY FK V PTGKR+LL +DVS SM + L A AAA+ M + RTE
Sbjct: 352 ALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSI--LNASTVAAAMCMVVTRTEKD 409
Query: 601 VKTMAFSHQLVEFDVRESDRLEEVVRRAERIPMGGTDCALPMIYATEKQLPVDVFVVLTD 780
+AFS ++V V L++V+ +IP GGTDC+LPMI+A + P DVF+V TD
Sbjct: 410 SYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTD 469
Query: 781 NETWFGGVHPTEALKRYRTAMKMPDAKLVVLAFSVNDFSIADPKDPGMLDVAGLDS 948
NET+ GGVHP AL+ YR M +P AKL+V + N F+IADP D GMLD+ G D+
Sbjct: 470 NETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDT 524
Score = 68.9 bits (167), Expect(2) = 2e-51
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 99 LIRRHRFGHEHVGDTVLLRNPAVWGAFLENGMPLTAMIRNLGRMSELGLLVQPSYQ-KRV 275
LI HR EH+ T L++ VW A L+ MPLTA++RNLG+M+ +L + + V
Sbjct: 247 LIEEHRLVREHLL-TNHLKSKEVWKALLQE-MPLTALLRNLGKMTANSVLEPGNSEVSLV 304
Query: 276 TDRLRDAKALTAARVHPMTLLDAMCTYRNGGGARGKARW 392
++L + K L AR+HP +L A+ TY+ G G RGK +W
Sbjct: 305 CEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKW 343
