KCC001187A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001187A_C01 KCC001187A_c01
CTCAAACTCTTTCCAACTGACCCCTTGCCTGCTGATTTCTTGTCAACTTGACCTCTCGTC
CTCGCCGCTCTCCGAACATACTTGCAACCATGAAATTCATTCTACTACTGTAGACACAAG
CCACATTCAGGGCTCAACGCCTAAGTAGGGAGCCCTAGACTCGGGCCAGGTTCGAGCAGG
TCCGGGCGGTCTAGCAGCAGCCATGGCGCCAAAGAAGCGCGAGCCCGCTAAGGATGAGGA
GATTGCAGCTCCGGAGACCATTGTCTTCGAGCGCTCGGAGCAGGAGGAGCAGTGCGAGAA
GATTTTCAGGGAGCTGGACAAAATGTTCAAGAAGCTCGCAAAGATAAACAAACCAGACAA
GATTCACTCTTCAATTAGGGACATTACGGCCAAACTCAAGCAGGCGAAGGAGCTCATCAA
GGACTTTGAGCGGGAGGCTCGCGCGGATGGAGTGCCGCAGAATGAGCTGGACGCGCGCAA
GAAGGCGCTGGCTGCCGAGCTCAACGGATTCATCGAGCTCAAGAAGGAGTACGCGCAGAC
AGAAGGGACAAAGGCAGACCTGCTGAACGGTGCCGCGCCGGAGGCGGAGCAGGCGTAGGA
AGGCATGTCCATGCAGCAGCTGATGAAGAAGGGCCGGACGGAAATCCAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001187A_C01 KCC001187A_c01
         (650 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F84765 hypothetical protein At2g35190 [imported] - Arabidop...    70  3e-11
sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11) gi|16612243...    70  3e-11
ref|NP_565800.1| expressed protein [Arabidopsis thaliana] gi|201...    70  3e-11
gb|AAG46143.1|AC082644_25 putative vesicle soluble NSF attachmen...    65  7e-10
dbj|BAC16405.1| vesicle soluble NSF attachment protein receptor-...    62  6e-09

>pir||F84765 hypothetical protein At2g35190 [imported] - Arabidopsis thaliana
          Length = 280

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 44/136 (32%), Positives = 71/136 (51%), Gaps = 12/136 (8%)
 Frame = +2

Query: 269 ERSEQEEQCEKIFRELDKMFKKLAKINKPDKIHSSIRDITAKLKQAKELIKDFEREARA- 445
           E +E E Q   IFR L   F+KL KI   ++    + ++T K++  K LIKDF+RE ++ 
Sbjct: 10  ELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSL 69

Query: 446 ----DGVPQNELDARKKALAAELNGFIELKKEYAQ---TEGTKADLLNGAAPEAEQ---- 592
               D      L+ R++++  ELN ++ LKK+Y+    +   + DL +G   E  +    
Sbjct: 70  ESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEEHMEENVL 129

Query: 593 A*EGMSMQQLMKKGRT 640
               MS Q+LM KG +
Sbjct: 130 LASNMSNQELMDKGNS 145

>sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11)
           gi|16612243|gb|AAL27494.1|AF439822_1 At2g35190/T4C15.14
           [Arabidopsis thaliana] gi|23505837|gb|AAN28778.1|
           At2g35190/T4C15.14 [Arabidopsis thaliana]
          Length = 265

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 44/136 (32%), Positives = 71/136 (51%), Gaps = 12/136 (8%)
 Frame = +2

Query: 269 ERSEQEEQCEKIFRELDKMFKKLAKINKPDKIHSSIRDITAKLKQAKELIKDFEREARA- 445
           E +E E Q   IFR L   F+KL KI   ++    + ++T K++  K LIKDF+RE ++ 
Sbjct: 10  ELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSL 69

Query: 446 ----DGVPQNELDARKKALAAELNGFIELKKEYAQ---TEGTKADLLNGAAPEAEQ---- 592
               D      L+ R++++  ELN ++ LKK+Y+    +   + DL +G   E  +    
Sbjct: 70  ESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEEHMEENVL 129

Query: 593 A*EGMSMQQLMKKGRT 640
               MS Q+LM KG +
Sbjct: 130 LASNMSNQELMDKGNS 145

>ref|NP_565800.1| expressed protein [Arabidopsis thaliana] gi|20197215|gb|AAC61818.2|
           expressed protein [Arabidopsis thaliana]
          Length = 265

 Score = 70.1 bits (170), Expect = 3e-11
 Identities = 44/136 (32%), Positives = 71/136 (51%), Gaps = 12/136 (8%)
 Frame = +2

Query: 269 ERSEQEEQCEKIFRELDKMFKKLAKINKPDKIHSSIRDITAKLKQAKELIKDFEREARA- 445
           E +E E Q   IFR L   F+KL KI   ++    + ++T K++  K LIKDF+RE ++ 
Sbjct: 10  ELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSL 69

Query: 446 ----DGVPQNELDARKKALAAELNGFIELKKEYAQ---TEGTKADLLNGAAPEAEQ---- 592
               D      L+ R++++  ELN ++ LKK+Y+    +   + DL +G   E  +    
Sbjct: 70  ESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEEHMEENVL 129

Query: 593 A*EGMSMQQLMKKGRT 640
               MS Q+LM KG +
Sbjct: 130 LASNMSNQELMDKGNS 145

>gb|AAG46143.1|AC082644_25 putative vesicle soluble NSF attachment protein receptor [Oryza
           sativa]
          Length = 275

 Score = 65.5 bits (158), Expect = 7e-10
 Identities = 43/141 (30%), Positives = 75/141 (52%), Gaps = 15/141 (10%)
 Frame = +2

Query: 269 ERSEQEEQCEKIFRELDKMFKKLAKINKPDKIHSSIRDITAKLKQAKELIKDFER---EA 439
           E  + + + + IFR L   F+K+ KI    +    + D+TAK+K+ K LIK+F+R   + 
Sbjct: 10  ELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIKEFDRILKDE 69

Query: 440 RADGVPQ--NELDARKKALAAELNGFIELKKEYAQTEGT---KADLLNGAAPEAEQA*E- 601
            ++  P+   +L+ RK+ +  ELN ++ L+K Y  + G    + +L +  A  +E A E 
Sbjct: 70  ESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGAGSSEPAAED 129

Query: 602 ------GMSMQQLMKKGRTEI 646
                  M+ QQLM  GR ++
Sbjct: 130 NIQIASAMTNQQLMDAGREQM 150

>dbj|BAC16405.1| vesicle soluble NSF attachment protein receptor-like protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 266

 Score = 62.4 bits (150), Expect = 6e-09
 Identities = 41/137 (29%), Positives = 68/137 (48%), Gaps = 11/137 (8%)
 Frame = +2

Query: 269 ERSEQEEQCEKIFRELDKMFKKLAKINKPDKIHSSIRDITAKLKQAKELIKDFER----- 433
           E  + + + + IFR L   F+K+ KI   ++    + D+T K+++ K LIK+F+R     
Sbjct: 10  ELEQVDGEIQDIFRALQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKED 69

Query: 434 EARADGVPQNELDARKKALAAELNGFIELKKEYAQTEGTKA----DLLNGAAPE--AEQA 595
           E +       +L+ +K+ +  ELN ++ L+K Y  + G K     D  N    E    Q 
Sbjct: 70  EKKNSADVNKQLNDKKQLMIKELNSYVTLRKTYQSSLGNKRIELFDTGNDQVAEDNTVQM 129

Query: 596 *EGMSMQQLMKKGRTEI 646
              MS QQLM  GR ++
Sbjct: 130 ASEMSNQQLMDAGRKQM 146



EST assemble image


clone accession position
1 LC031c07_r AV621104 1 477
2 LCL070f04_r AV629991 60 510
3 HCL030c05_r AV641236 79 533
4 MXL001h01_r BP092988 91 345
5 CM024e12_r AV388214 203 728




Chlamydomonas reinhardtii
Kazusa DNA Research Institute