KCC001184A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001184A_C01 KCC001184A_c01
cctctccgtactgaatttctatgtgccatccttgtcTTTCACTATCTCCTCATATCTTTG
AAGTCTGAACCTCGCTTGATCGTGACTCCAGACTAGAAGCGACGACGTTAGCCCAGAGCC
CATCACCACAGCAATCTTTACTATCGTCACATGTAGATTGGTCTCGCAGTTCCGTAACCA
GAAGACGCCTGCAACGGCGAGCGCGGACCAGCTGTTGTGGCAATTGGCCACCCCTCTTCT
CCACCATGTTCAGTAGCGTCCAGGGCGGCTGCCTTAGCAACTTCGTTGAGCAGGATGGTT
GCGCGCGGACAGTCATCGTGCTCCTGCTACTGACGACCGTCGGCTGCATTAGCTACACTT
GGGGGATATTACGAGGGTATTGCGAATGCCCAGAGCAATCTGATGTTGGATAAGCTGCAC
GAACTTCAGCTGGCGCAGATGGCATCCGCGGCCACGGGCAACGGGACGCACCAGGCCAAG
CGGCATGCTGGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001184A_C01 KCC001184A_c01
         (494 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_156374.3| similar to Zinc finger protein 174 (AW-1) [Mus ...    33  1.5
ref|XP_319784.1| ENSANGP00000019589 [Anopheles gambiae] gi|21302...    33  1.5
dbj|BAC04849.1| unnamed protein product [Homo sapiens]                 33  1.9
gb|AAL87754.1|AF403181_1 putative reductive dehalogenase [Desulf...    33  1.9
ref|NP_216598.1| hypothetical protein Rv2082 [Mycobacterium tube...    33  2.5

>ref|XP_156374.3| similar to Zinc finger protein 174 (AW-1) [Mus musculus]
          Length = 458

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = -2

Query: 298 PSCSTKLLRQPPWTLLNMVEKRGGQLPQQLVR---ARRCRRLLVTELRDQSTCDDSKDCC 128
           PSC   L R   W  + ++EK G QL +Q +R    +   R +  +  ++ +C+ S +  
Sbjct: 180 PSCGHYLGRLADWQKV-LLEKTGAQLVEQELRDFQPQTPSRDIQEDSLEEPSCEGSHEQL 238

Query: 127 GDGLWANVVASSLESRSSEVQTSKI*GDSE 38
               W   V      R +E ++S++ GD E
Sbjct: 239 SPHHWEKTVLQEPVLRLTETESSRMRGDKE 268

>ref|XP_319784.1| ENSANGP00000019589 [Anopheles gambiae] gi|21302624|gb|EAA14769.1|
           ENSANGP00000019589 [Anopheles gambiae str. PEST]
          Length = 674

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 25/83 (30%), Positives = 36/83 (43%)
 Frame = +1

Query: 184 DACNGERGPAVVAIGHPSSPPCSVASRAAALATSLSRMVARGQSSCSCY*RPSAALATLG 363
           + C GE GP +    HPS  P  V        T         +++C  Y R + +L + G
Sbjct: 228 ECCTGEHGPLLPRYRHPSCQPMEVREDDPYYRTY--------RATCLNYVRSALSLGSTG 279

Query: 364 GYYEGIANAQSNLMLDKLHELQL 432
           G + G AN Q N   ++L   QL
Sbjct: 280 GCHLGPAN-QLNAATNRLDLSQL 301

>dbj|BAC04849.1| unnamed protein product [Homo sapiens]
          Length = 161

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 311 CPRATILLNEVAKAAALDATEHGGEEGWPIATTAGPRSPLQASSG 177
           CPRA +  N  +  +A+ A   G    W  A  A PRS L+   G
Sbjct: 97  CPRAPVASNRQSGGSAVSAPLSGARRAWKSAFAAPPRSRLRPQKG 141

>gb|AAL87754.1|AF403181_1 putative reductive dehalogenase [Desulfitobacterium hafniense]
          Length = 201

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 6/64 (9%)
 Frame = -3

Query: 261 GRY*TWWRRGVANCHNSWSALAVAGV-FWLRNC----ETN-LHVTIVKIAVVMGSGLTSS 100
           GR    W+   + CHN W ++   G    L  C    E+N LH T   IAV   +G+T+S
Sbjct: 95  GRGYDGWQINASTCHNFWMSVPNGGCRVCLAVCPFSKESNWLHTTARDIAVRERTGITAS 154

Query: 99  LLVW 88
            L W
Sbjct: 155 TLTW 158

>ref|NP_216598.1| hypothetical protein Rv2082 [Mycobacterium tuberculosis H37Rv]
           gi|1731338|sp|Q10690|YK82_MYCTU Hypothetical protein
           Rv2082 gi|7477056|pir||E70766 hypothetical protein
           Rv2082 - Mycobacterium tuberculosis  (strain H37RV)
           gi|1370248|emb|CAA98194.1| hypothetical protein Rv2082
           [Mycobacterium tuberculosis H37Rv]
          Length = 721

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 28/98 (28%), Positives = 38/98 (38%)
 Frame = -2

Query: 451 PRMPSAPAEVRAAYPTSDCSGHSQYPRNIPQV*LMQPTVVSSRSTMTVRAQPSCSTKLLR 272
           P  P+ P    A  P+S  +G S          LM P V  S +  T +AQPS  T  L 
Sbjct: 442 PPTPTGPISGAAVTPSSPAAGGS----------LMSPVVNKSTAPATTQAQPSNPTPPLA 491

Query: 271 QPPWTLLNMVEKRGGQLPQQLVRARRCRRLLVTELRDQ 158
               T         G   ++    +R RR+L T  R +
Sbjct: 492 SA--TAAATTGAAAGDTSRRAAEQQRLRRILDTVARQE 527



EST assemble image


clone accession position
1 LC081e01_r AV624706 1 495
2 MX237d12_r BP091352 37 346
3 CM024d11_r AV388262 40 618
4 MX209g03_r BP089559 40 231




Chlamydomonas reinhardtii
Kazusa DNA Research Institute