Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001181A_C01 KCC001181A_c01
(629 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188137.1| chloroplast 30S ribosomal protein S20, putative... 94 2e-18
gb|AAP79183.1| ribosomal protein rpS20 [Bigelowiella natans] 88 9e-17
dbj|BAB02573.1| gene_id:F4B12.10~unknown protein [Arabidopsis th... 82 8e-15
dbj|BAB90029.1| B1144G04.20 [Oryza sativa (japonica cultivar-gro... 75 6e-13
ref|ZP_00070894.1| COG0268: Ribosomal protein S20 [Trichodesmium... 71 1e-11
>ref|NP_188137.1| chloroplast 30S ribosomal protein S20, putative [Arabidopsis
thaliana] gi|13605653|gb|AAK32820.1|AF361807_1
AT3g15190/F4B12_10 [Arabidopsis thaliana]
gi|13899121|gb|AAK48982.1|AF370555_1 Unknown protein
[Arabidopsis thaliana] gi|15777889|gb|AAL05905.1|
AT3g15190/F4B12_10 [Arabidopsis thaliana]
gi|18377542|gb|AAL66937.1| unknown protein [Arabidopsis
thaliana] gi|21592469|gb|AAM64420.1| 30S ribosomal
protein S20 [Arabidopsis thaliana]
Length = 202
Score = 94.0 bits (232), Expect = 2e-18
Identities = 54/108 (50%), Positives = 67/108 (62%)
Frame = +2
Query: 176 AQKKKMPSPVKRALLSEERRVYNKSHKSACATRVKKVVKLAETLVAAPSKTEEEVKNLEK 355
A KK S KRA +E+RRVYNKS KS TR+KKV++ E L +E+ +EK
Sbjct: 82 APTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEK 141
Query: 356 LISEAYTEIDKAVVKGILHENTAARKKARCARWKKTVLMAAGLYKPAA 499
LI EAY+ IDKAV LH+NT AR+K+R AR KK V + G Y P A
Sbjct: 142 LIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDA 189
>gb|AAP79183.1| ribosomal protein rpS20 [Bigelowiella natans]
Length = 194
Score = 88.2 bits (217), Expect = 9e-17
Identities = 43/98 (43%), Positives = 62/98 (62%)
Frame = +2
Query: 206 KRALLSEERRVYNKSHKSACATRVKKVVKLAETLVAAPSKTEEEVKNLEKLISEAYTEID 385
KR E R+YNK+ KSA TR KK ++ + E +++ +KL+SEAY EID
Sbjct: 92 KRDRQGERHRIYNKAIKSAVKTRTKKALRAIDEAKKGGISNEADLQASDKLMSEAYKEID 151
Query: 386 KAVVKGILHENTAARKKARCARWKKTVLMAAGLYKPAA 499
KA+ KG++ +NT AR+K+R A W+K +L+ GLY P A
Sbjct: 152 KAITKGVMKKNTGARQKSRIATWRKKLLIENGLYSPEA 189
>dbj|BAB02573.1| gene_id:F4B12.10~unknown protein [Arabidopsis thaliana]
Length = 223
Score = 81.6 bits (200), Expect = 8e-15
Identities = 55/129 (42%), Positives = 69/129 (52%), Gaps = 21/129 (16%)
Frame = +2
Query: 176 AQKKKMPSPVKRALLSEERRVYNKSHKSACATRVKKVV------------------KLAE 301
A KK S KRA +E+RRVYNKS KS TR+KK ++ E
Sbjct: 82 APTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKQPMNNTEHWNPNESKIHLSKQVLE 141
Query: 302 TLVAAPSKTE---EEVKNLEKLISEAYTEIDKAVVKGILHENTAARKKARCARWKKTVLM 472
L KT+ +E+ +EKLI EAY+ IDKAV LH+NT AR+K+R AR KK V +
Sbjct: 142 ALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEI 201
Query: 473 AAGLYKPAA 499
G Y P A
Sbjct: 202 HHGWYVPDA 210
>dbj|BAB90029.1| B1144G04.20 [Oryza sativa (japonica cultivar-group)]
Length = 196
Score = 75.5 bits (184), Expect = 6e-13
Identities = 57/169 (33%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Frame = +2
Query: 26 QPRP----LKMQSTMLRAASAVRAFQ----PAKPTFAPVSRPAVERGALVVM--AAEGKD 175
QP P L+ S R +++ AF A P S R L V+ AA+
Sbjct: 23 QPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGT 82
Query: 176 AQKKKMPSPVKRALLSEERRVYNKSHKSACATRVKKVVKLAETLVAAPSKTEEEVKNLEK 355
A ++ S KR ++ R+ N + K+ TR+KKV+K E L T E++ +EK
Sbjct: 83 ATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEK 142
Query: 356 LISEAYTEIDKAVVKGILHENTAARKKARCARWKKTVLMAAGLYKPAAD 502
ISEAY IDK V G +H NT +K+ AR KK + + G Y P A+
Sbjct: 143 WISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAE 191
>ref|ZP_00070894.1| COG0268: Ribosomal protein S20 [Trichodesmium erythraeum IMS101]
Length = 112
Score = 70.9 bits (172), Expect = 1e-11
Identities = 39/93 (41%), Positives = 60/93 (63%)
Frame = +2
Query: 197 SPVKRALLSEERRVYNKSHKSACATRVKKVVKLAETLVAAPSKTEEEVKNLEKLISEAYT 376
S +KR ++E R+ NKS+KSA T +KK E + P T+E +E+ +S+AY+
Sbjct: 6 SAIKRIQVAERNRLRNKSYKSAVRTLMKKYFTTVEKYASNP--TDELKIEVEQQMSKAYS 63
Query: 377 EIDKAVVKGILHENTAARKKARCARWKKTVLMA 475
+IDKAV +G+LH+N +RKKAR R+ K L++
Sbjct: 64 KIDKAVKRGVLHKNNGSRKKARLVRFYKRHLIS 96
