KCC001180A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001180A_C01 KCC001180A_c01
ctcatacaataattacagctactgtatAGTCTACTCGCCCATGTGTAGCACGCTTGGGCA
CTAGCTCGCATTTGAGAGAACCAACACCCTTGCTCCCCCCATTTTCGTCAAAACCAACAT
TCTTCAAATTGATACTGTAGTTCTCACTCTGAGTAGCAGCTACGGCTGTCGTTCCCGTGG
TTGAGAGCCCTTGCCGTTGTGGTTCTATTGTGGAGGCAGCGGGCGTAGCGACCGGGCGCA
AGCAGCTGAGCGGGCGGTGGAGAACCAGTCGCAAAAGTCTGCGGAGTTGTGGGATCCAGT
GAGACTCAAGCTCACGCCTCTTCCTGGGTCCCACACGCAAGCTCACGCCTCGTCTGGGTC
CCACACATACACACCGCACCGCACGTGCACCGCCGAGACCACCGCAAAGCAAGCGCAAGA
GGCCGCGAGCTCGCGCGCGCGCGCCAGTCAACATTGCTGTCCGCACCACTGCAGCGCCAA
GCTAGCTTAGCGCCCAGTCAAGTGGCTCTTCACATCCTCCTTCCGCGCCCTGTGGTCGCC
GCGGCCTGTTGCTTTGGCTGGCGAGTCACAGGAGCACAAATCGACGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001180A_C01 KCC001180A_c01
         (589 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P13730|SGS3_DROER SALIVARY GLUE PROTEIN SGS-3 PRECURSOR gi|84...    39  0.054
gb|AAH58068.1| Unknown (protein for MGC:63802) [Danio rerio]           37  0.21
ref|ZP_00045525.1| hypothetical protein [Magnetococcus sp. MC-1]       37  0.27
ref|ZP_00023669.1| COG1451: Predicted metal-dependent hydrolase ...    36  0.35
ref|XP_288281.1| hypothetical protein XP_288281 [Mus musculus]         36  0.46

>sp|P13730|SGS3_DROER SALIVARY GLUE PROTEIN SGS-3 PRECURSOR gi|84867|pir||S01359 salivary
           glue protein sgs-3 precursor - fruit fly  (Drosophila
           erecta)
          Length = 328

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 26/72 (36%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
 Frame = +3

Query: 330 PTRKLTPRLGPTHTHRTARAPPRPPQSKRKRPRARA---RAPVNIAVRTTAAPS*LSAQS 500
           PT+++T +  PT    T RAP +   +KR  P  RA   RAP   A  T  AP+  +   
Sbjct: 212 PTKRVTTKRAPTKRATTKRAPTKRATTKR-APTKRATTKRAPTKRAT-TKRAPTKRATTK 269

Query: 501 SGSSHPPSAPCG 536
             ++ P S PCG
Sbjct: 270 RATARPTSKPCG 281

>gb|AAH58068.1| Unknown (protein for MGC:63802) [Danio rerio]
          Length = 896

 Score = 37.0 bits (84), Expect = 0.21
 Identities = 29/95 (30%), Positives = 39/95 (40%)
 Frame = +3

Query: 261 RTSRKSLRSCGIQ*DSSSRLFLGPTRKLTPRLGPTHTHRTARAPPRPPQSKRKRPRARAR 440
           R  R   RS   +  +S R  + P R+  PR  P   HR +R+P R     R+RPR+R  
Sbjct: 289 RRPRSRSRSFSPRRRTSPRRRISPRRRSPPRRQPPSRHRRSRSPVR-----RRRPRSR-- 341

Query: 441 APVNIAVRTTAAPS*LSAQSSGSSHPPSAPCGRRG 545
                           S+  S SS  P    G+RG
Sbjct: 342 ----------------SSSGSSSSRSPHKRAGKRG 360

>ref|ZP_00045525.1| hypothetical protein [Magnetococcus sp. MC-1]
          Length = 582

 Score = 36.6 bits (83), Expect = 0.27
 Identities = 19/51 (37%), Positives = 25/51 (48%)
 Frame = +3

Query: 324 LGPTRKLTPRLGPTHTHRTARAPPRPPQSKRKRPRARARAPVNIAVRTTAA 476
           +GPT +  PR  P    + AR PP  PQ K + P  R R P  + +  T A
Sbjct: 28  MGPTAQRPPRQQPALPSQAARPPPLHPQRKPRPPCLRIRNPNRLGLSMTQA 78

>ref|ZP_00023669.1| COG1451: Predicted metal-dependent hydrolase [Ralstonia
           metallidurans]
          Length = 461

 Score = 36.2 bits (82), Expect = 0.35
 Identities = 21/68 (30%), Positives = 31/68 (44%)
 Frame = +3

Query: 339 KLTPRLGPTHTHRTARAPPRPPQSKRKRPRARARAPVNIAVRTTAAPS*LSAQSSGSSHP 518
           +L+PR  P H  +  R  P  P ++ + P A A  PV    +  +  S      + S  P
Sbjct: 159 QLSPRRKPGHRMKLLRPAPETPGAQLELPLAEALPPVTPEQQDLSPTSAPQTPETASPWP 218

Query: 519 PSAPCGRR 542
           P+ P GRR
Sbjct: 219 PALPNGRR 226

>ref|XP_288281.1| hypothetical protein XP_288281 [Mus musculus]
          Length = 164

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
 Frame = +3

Query: 351 RLGPTHTHRTARAPPRPPQSKRKRPRAR---ARAPVNIAVRTTAAPS*LSAQSSGSSHPP 521
           +LG  H H + + PP PP      P      +R+   +  R  A+   + +  +G   PP
Sbjct: 63  KLGCRHPHSSCQRPPSPPLLTGAAPETAIPGSRSREQLPPRGPASAGQIPSAETGQRPPP 122

Query: 522 SAPCGRRGL 548
             PC  RGL
Sbjct: 123 RPPCRLRGL 131



EST assemble image


clone accession position
1 LCL081d12_r AV630606 1 374
2 CM024b04_r AV388250 21 589




Chlamydomonas reinhardtii
Kazusa DNA Research Institute