KCC001179A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001179A_C01 KCC001179A_c01
ctgcggctttcTGCGGCCTGAACTTCAAGGTCATCTCGCGCATCCCCAAGAACGGTGTTG
ACCGCAACCCTGACTGCTCTCTGCTGGCGACCCTGGTGCAGAGTACGTTCACCCAGGGCG
TGCAGCTGCGCAACCCTCCCCAGTTCCGCTGCGGCACGACCGTCAGCGCTACCGAGATCA
GCGCCGTCGCCGACACTCTGACTACGGAGGGTGCTCAGGTTTTCCTGCGCAACATGGCCG
GCAACATTGGTGCCTTCAACCAGTTCACCTTCCCTGCCCCCGGCGGTCTGGGCCTGATTT
GCGGTGACTACTTCAACGTCACTTCGACTTGCGGCATGAACACCACCGCGCCCGTGCCCG
TGTTCCAGCCTAACGGCACCGTTGTCAACGCCACCTACCCCTTCGTCGTCGGCCCCGACG
CCATCTTCTACCCCCAGTTCGTCCTGCCGTCCTACACCTGCnCCTCCTCCCACTCAAGAT
AAAAAAAAAAAAACAAAACAAAAAACAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACAAAACAAAAAAAAAAAAAAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001179A_C01 KCC001179A_c01
         (572 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_287096.1| RIKEN cDNA 1110064A23 [Mus musculus]                  60  2e-08
ref|ZP_00056820.1| COG2115: Xylose isomerase [Thermobifida fusca]      59  6e-08
gb|EAA21939.1| hypothetical protein [Plasmodium yoelii yoelii]         56  3e-07
gb|AAA59163.1| mucin                                                   56  4e-07
gb|AAA59875.1| mucin                                                   56  4e-07

>ref|XP_287096.1| RIKEN cDNA 1110064A23 [Mus musculus]
          Length = 91

 Score = 60.5 bits (145), Expect = 2e-08
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFYL 476
           FFFF F FFFFFFFFFFFF F FF  FFFF++
Sbjct: 52  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFV 83

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           FFFF F FFFFFFFFFFFF F FF  FFFF+
Sbjct: 50  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 80

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           FFFF F FFFFFFFFFFFF F FF  FFFF+
Sbjct: 49  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 79

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           FFFF F FFFFFFFFFFFF F FF  FFFF+
Sbjct: 46  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 76

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           FFFF F FFFFFFFFFFFF F FF  FFFF+
Sbjct: 51  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 81

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           FFFF F FFFFFFFFFFFF F FF  FFFF+
Sbjct: 48  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 78

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           FFFF F FFFFFFFFFFFF F FF  FFFF+
Sbjct: 47  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 77

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 25/32 (78%), Positives = 25/32 (78%)
 Frame = -2

Query: 571 FFFFLFCFFFFFFFFFFFFLFLFFVLFFFFYL 476
           FFFF F FFFFFFFFFFFF F FF  FFFF L
Sbjct: 53  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFVL 84

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 25/36 (69%), Positives = 27/36 (74%)
 Frame = -3

Query: 570 FFFFCFVFFFFFFFFFFFFCFCFLFCFFFFILSGRR 463
           FFFF F FFFFFFFFFFFF F F F FFFF +  R+
Sbjct: 52  FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFVLPRQ 87

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 21/27 (77%), Positives = 22/27 (80%)
 Frame = -2

Query: 559 LFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           LF FFFFFFFFFFFF F FF  FFFF+
Sbjct: 45  LFFFFFFFFFFFFFFFFFFFFFFFFFF 71

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = -2

Query: 559 LFCFFFFFFFFFFFFLFLFFVLFFFFY 479
           L  FFFFFFFFFFFF F FF  FFFF+
Sbjct: 44  LLFFFFFFFFFFFFFFFFFFFFFFFFF 70

>ref|ZP_00056820.1| COG2115: Xylose isomerase [Thermobifida fusca]
          Length = 754

 Score = 58.5 bits (140), Expect = 6e-08
 Identities = 41/137 (29%), Positives = 62/137 (44%), Gaps = 2/137 (1%)
 Frame = +1

Query: 109 SPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPSTSSPSLPPAV 288
           +P   +C+  PS+A    ++ PR +P P        + S A+ P    PSTSS   P   
Sbjct: 75  TPTGPTCSPSPSAA----NSAPRESPPPP-------KSSAASPPPNSPPSTSSAPAPATT 123

Query: 289 WA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSAPTP--SSTPSSSCRPTPA 462
           W   + +T      ++ + P   P  S   P  TPP PS  +PTP  +S+PSS+    PA
Sbjct: 124 WPPHSPSTPDPATSSSPSAPPEPPSPSPKNPPPTPPAPSPDSPTPPDASSPSSAPSTQPA 183

Query: 463 PPPTQDKKKKTKQKTKT 513
             P +  +  +  K  T
Sbjct: 184 SSPPEPLRSASPSKNST 200

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 43/120 (35%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
 Frame = +1

Query: 112 PRACSCATLPSSAAARPSALPRSA-PSPTL*LRRVLRFSCATWPATLVPSTSSPSLPPAV 288
           P+A SC T  S     P+ALP+   PSPT           AT PA   P+T++P   P  
Sbjct: 37  PKASSCPTTGS-----PNALPKPPNPSPT----------AATPPA---PATTTPPPTPT- 77

Query: 289 WA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSA--PTPSSTPSSSCRPTPA 462
                 T S            P P ++ +AP  +PP P SSA  P P+S PS+S  P PA
Sbjct: 78  ----GPTCS------------PSPSAANSAPRESPPPPKSSAASPPPNSPPSTSSAPAPA 121

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 48/167 (28%), Positives = 68/167 (39%), Gaps = 27/167 (16%)
 Frame = +1

Query: 91  PWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPST-SS 267
           P     +P  C      S+A+  P++ P + P+P+         S A   A+L PST SS
Sbjct: 217 PTSTANAPPTCPTPPAASTASPEPTSPPPTWPAPS---------SKACSAASLTPSTPSS 267

Query: 268 PSLPPAVWA*FAVTTSTSLRLAA*TPPR--PCPCSSLTAPLSTPPTPSSS-----APTPS 426
             + P+        T +S   AA  PP+  P P  S  AP  + P  ++S     A  P 
Sbjct: 268 TKVSPS--------TVSSSSAAAPAPPQSAPSPPKSSAAPSPSQPKANTSPTAPPAKQPG 319

Query: 427 STPS------------SSCRPTP-------APPPTQDKKKKTKQKTK 510
            +P+            SS +PTP        P P  D  +KTK  TK
Sbjct: 320 HSPANPPHPNGKTPEPSSAKPTPPRRYANATPKPETDSNRKTKPTTK 366

 Score = 41.2 bits (95), Expect = 0.010
 Identities = 33/108 (30%), Positives = 49/108 (44%), Gaps = 2/108 (1%)
 Frame = +1

Query: 154 ARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPSTSSPSLPPAVWA*FAVTTSTSLRLA 333
           A+PSA   S  SP+              P +     ++P+ PP   A    TT +   L 
Sbjct: 7   AKPSAQSPSPASPS--------------PNSAGSPNTNPTTPPEPKASSCPTTGSPNALP 52

Query: 334 A*TPPRPCPCSSL-TAPLSTPPTPSSSAPTPSSTPS-SSCRPTPAPPP 471
              PP P P ++   AP +T P P+ + PT S +PS ++  P  +PPP
Sbjct: 53  K--PPNPSPTAATPPAPATTTPPPTPTGPTCSPSPSAANSAPRESPPP 98

 Score = 40.4 bits (93), Expect = 0.017
 Identities = 61/203 (30%), Positives = 78/203 (38%), Gaps = 42/203 (20%)
 Frame = +1

Query: 43  SPRTVLTATLTALCWRPWCRVRSPRACSCATL--PSSAAARPSALPRSAP---------S 189
           SP +  +A   A  W P     SP     AT   PS+    PS  P++ P         S
Sbjct: 110 SPPSTSSAPAPATTWPP----HSPSTPDPATSSSPSAPPEPPSPSPKNPPPTPPAPSPDS 165

Query: 190 PTL*LRRVLRFSCATWPATLVP-----------STSSPSL-PPAVWA*FAVTTSTSLRLA 333
           PT         + +T PA+  P           ST+SPS  PPA  A  +  TST+   A
Sbjct: 166 PTPPDASSPSSAPSTQPASSPPEPLRSASPSKNSTNSPSPHPPAPAASSSCPTSTAN--A 223

Query: 334 A*TPPRPCPCSSLTAPLSTPPTPSSSAP-------------TPSSTP------SSSCRPT 456
             T P P P +S  +P  T P P+  AP             TPSST       SSS    
Sbjct: 224 PPTCPTP-PAASTASPEPTSPPPTWPAPSSKACSAASLTPSTPSSTKVSPSTVSSSSAAA 282

Query: 457 PAPPPTQDKKKKTKQKTKTKKKK 525
           PAPP +     K+       + K
Sbjct: 283 PAPPQSAPSPPKSSAAPSPSQPK 305

>gb|EAA21939.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 85

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 27/43 (62%), Positives = 29/43 (66%)
 Frame = +3

Query: 444 LPSYTCXSSHSR*KKKNKTKNKNKKKKKKKKKKKKKQNKKKKK 572
           L S+ C     + KKKNK KNK KKKKK KKKKKKK  KK KK
Sbjct: 5   LESFFCIQKKKKKKKKNKKKNKKKKKKKNKKKKKKKNKKKNKK 47

 Score = 51.2 bits (121), Expect = 1e-05
 Identities = 24/30 (80%), Positives = 24/30 (80%)
 Frame = +3

Query: 483 KKKNKTKNKNKKKKKKKKKKKKKQNKKKKK 572
           KKKNK KNK KKKKK KKKKKKK  KK KK
Sbjct: 38  KKKNKKKNKKKKKKKNKKKKKKKNKKKNKK 67

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K KKKK+NKK+K+KK KKK KKKKK K KKKK
Sbjct: 26  KKKKKKKNKKKKKKKNKKKNKKKKKKKNKKKK 57

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKK 568
           K KKKK+NKK+ +KKKKKK KKKKK K KKK
Sbjct: 34  KKKKKKKNKKKNKKKKKKKNKKKKKKKNKKK 64

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 23/30 (76%), Positives = 23/30 (76%)
 Frame = +3

Query: 483 KKKNKTKNKNKKKKKKKKKKKKKQNKKKKK 572
           KKKNK K K K KKKKKKK KKK  KKKKK
Sbjct: 42  KKKNKKKKKKKNKKKKKKKNKKKNKKKKKK 71

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 23/32 (71%), Positives = 26/32 (80%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K K KK+NKK+K+KK KKKKKKK K K KKKK
Sbjct: 38  KKKNKKKNKKKKKKKNKKKKKKKNKKKNKKKK 69

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 23/32 (71%), Positives = 26/32 (80%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K K KK+NKK+K+KK KKKKKKK K K KKKK
Sbjct: 18  KKKNKKKNKKKKKKKNKKKKKKKNKKKNKKKK 49

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 22/32 (68%), Positives = 26/32 (80%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K KKK + KK+K+ KKKKKKK KKK K+KKKK
Sbjct: 40  KNKKKNKKKKKKKNKKKKKKKNKKKNKKKKKK 71

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +3

Query: 483 KKKNKTKNKNKKKKKKKKKKKKKQNKKKKK 572
           KKK K KNK KKKKK KKK KKK+ KK KK
Sbjct: 46  KKKKKKKNKKKKKKKNKKKNKKKKKKKNKK 75

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +3

Query: 483 KKKNKTKNKNKKKKKKKKKKKKKQNKKKKK 572
           KKK K KNK K KKKKKKK KKK+ KK KK
Sbjct: 34  KKKKKKKNKKKNKKKKKKKNKKKKKKKNKK 63

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKK 565
           K KKKK+NKK+K+KK KKK KKKKK K KK
Sbjct: 46  KKKKKKKNKKKKKKKNKKKNKKKKKKKNKK 75

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 22/32 (68%), Positives = 25/32 (77%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K KK K+ KK+K KKK KKKKKKK  K+KKKK
Sbjct: 29  KKKKNKKKKKKKNKKKNKKKKKKKNKKKKKKK 60

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 22/32 (68%), Positives = 24/32 (74%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K KKKK  KK K+KKKKK KKKKKK  +KK K
Sbjct: 35  KKKKKKNKKKNKKKKKKKNKKKKKKKNKKKNK 66

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +2

Query: 482 KKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           KK K+ KK+K KKKKKKK KKK  K+KKKK
Sbjct: 43  KKNKKKKKKKNKKKKKKKNKKKNKKKKKKK 72

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 21/32 (65%), Positives = 25/32 (77%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K KKKK+ K +K+KKKK KKK KKK K+K KK
Sbjct: 44  KNKKKKKKKNKKKKKKKNKKKNKKKKKKKNKK 75

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 21/32 (65%), Positives = 25/32 (77%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K KKKK+ K +K+ KKKKKKK KKK K+K KK
Sbjct: 32  KNKKKKKKKNKKKNKKKKKKKNKKKKKKKNKK 63

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 21/32 (65%), Positives = 24/32 (74%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K  KKK+ KK K+KKKKK KKK KK K+KK K
Sbjct: 43  KKNKKKKKKKNKKKKKKKNKKKNKKKKKKKNK 74

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 21/32 (65%), Positives = 24/32 (74%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKKK 571
           K  KKK  KK+K+K KKKKKKK KK  +KKKK
Sbjct: 39  KKNKKKNKKKKKKKNKKKKKKKNKKKNKKKKK 70

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 20/31 (64%), Positives = 24/31 (76%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKTKQKKK 568
           K K KK+ KK+ +KKKKKK KKK K K+KKK
Sbjct: 42  KKKNKKKKKKKNKKKKKKKNKKKNKKKKKKK 72

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = +3

Query: 483 KKKNKTKNKNKKKKKKKKKKKKKQN 557
           KKKNK KNK KKKKK KK +    N
Sbjct: 58  KKKNKKKNKKKKKKKNKKIEMATDN 82

 Score = 33.1 bits (74), Expect = 2.8
 Identities = 16/26 (61%), Positives = 18/26 (68%)
 Frame = +2

Query: 476 KIKKKKQNKKQKQKKKKKKKKKKKKT 553
           K KKKK  KK K+KKKKK KK +  T
Sbjct: 55  KKKKKKNKKKNKKKKKKKNKKIEMAT 80

>gb|AAA59163.1| mucin
          Length = 1270

 Score = 55.8 bits (133), Expect = 4e-07
 Identities = 46/155 (29%), Positives = 66/155 (41%), Gaps = 11/155 (7%)
 Frame = +1

Query: 43   SPRTVLTA---TLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRV 213
            SP T  T    T+T     P      P   +    P++  + P+  P + P+ T  L   
Sbjct: 954  SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1013

Query: 214  LRFSCATWPATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTP 393
               S      T  P T++PS P        +TT+T+       PP   P S +T   S P
Sbjct: 1014 TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTT------PPPTTTPSSPITTTPS-P 1066

Query: 394  PTPSSSAPTPSSTPSS--------SCRPTPAPPPT 474
            PT + + P+P++TPSS        S   TP+PPPT
Sbjct: 1067 PTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPT 1101

 Score = 54.7 bits (130), Expect = 9e-07
 Identities = 42/145 (28%), Positives = 58/145 (39%), Gaps = 2/145 (1%)
 Frame = +1

Query: 46   PRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFS 225
            P T  T   T     P     SP   +  T P +    P     + P PT         +
Sbjct: 941  PTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPT---------T 991

Query: 226  CATWPAT--LVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPT 399
              + P T  + P TS+ +LPP        TT+T       TPP     S  T    +PP 
Sbjct: 992  TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTT-------TPPPTTTPSPPTTTTPSPPI 1044

Query: 400  PSSSAPTPSSTPSSSCRPTPAPPPT 474
             +++ P P++TPSS    TP+PP T
Sbjct: 1045 TTTTTPPPTTTPSSPITTTPSPPTT 1069

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 36/118 (30%), Positives = 50/118 (41%), Gaps = 2/118 (1%)
 Frame = +1

Query: 127  CATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPS--TSSPSLPPAVWA*F 300
            C T PS     PS      P PT         +  T P T  PS  T++ + PP      
Sbjct: 770  CITTPSPPTTTPS------PPPT---------TTTTLPPTTTPSPPTTTTTTPPPTTTPS 814

Query: 301  AVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSAPTPSSTPSSSCRPTPAPPPT 474
               T+T+  L   TP  P   ++   P +TP  P+++   P++TPS     T  PPPT
Sbjct: 815  PPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPT 872

 Score = 52.0 bits (123), Expect = 6e-06
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
 Frame = +1

Query: 112  PRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPSTSSPSLPPAVW 291
            P   +    P++  + P   P + P+ T  L      S  T   T  P T++PS PP   
Sbjct: 862  PTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPS-PPTTT 920

Query: 292  A*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLST-----------PPTPSSSAPTPSSTPS 438
                 T++T+L     T P P P ++ T P +T           PPT +++ P P++TPS
Sbjct: 921  PITPPTSTTTLPPT--TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPS 978

Query: 439  SSCRPTPAPPPT 474
                 T  PPPT
Sbjct: 979  PPTTTTTTPPPT 990

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 44/145 (30%), Positives = 61/145 (41%), Gaps = 2/145 (1%)
 Frame = +1

Query: 46   PRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFS 225
            P T  T   T     P     +P   +  + P +    P  LP + PSP +        S
Sbjct: 785  PTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTP--LPTTTPSPPI--------S 834

Query: 226  CATWPATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPS 405
              T P    P T++PS PP        TT +       TPP   P ++ + P++TP TP 
Sbjct: 835  TTTTP----PPTTTPS-PPTTTPSPPTTTPSPPTTTTTTPP---PTTTPSPPMTTPITPP 886

Query: 406  SSAPT--PSSTPSSSCRPTPAPPPT 474
            +S  T  P++TPS     T  PPPT
Sbjct: 887  ASTTTLPPTTTPSPPTTTTTTPPPT 911

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 37/124 (29%), Positives = 56/124 (44%), Gaps = 7/124 (5%)
 Frame = +1

Query: 124  SCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPS---TSSPSLPPAVWA 294
            S  TLP +    P     + P PT         +  + P T  PS   T++ + PP    
Sbjct: 1006 STTTLPPTTTPSPPPTTTTTPPPT---------TTPSPPTTTTPSPPITTTTTPPPTTTP 1056

Query: 295  *FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSAPTPSSTPSSSCRP----TPA 462
               +TT+ S      T   P P ++ ++P++T  TPSS+  TPS  P++   P    TP+
Sbjct: 1057 SSPITTTPSPPTT--TMTTPSPTTTPSSPITTTTTPSSTT-TPSPPPTTMTTPSPTTTPS 1113

Query: 463  PPPT 474
            PP T
Sbjct: 1114 PPTT 1117

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 41/134 (30%), Positives = 52/134 (38%), Gaps = 17/134 (12%)
 Frame = +1

Query: 124  SCATLPSSAAARPSAL------PRSAPSPTL*LRRVLRFSCATWPATLVPS---TSSPSL 276
            S  TLP +    P         P + PSP          S  T P T  PS   T++ + 
Sbjct: 888  STTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTP 947

Query: 277  PPAVWA*FAVTTSTSLRLAA*T--PPRPCPCSSLTAPLSTPPTPSSSAPT------PSST 432
            PP        TT+ S      T  PP   P    T   + PPT + S PT      P+ST
Sbjct: 948  PPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTST 1007

Query: 433  PSSSCRPTPAPPPT 474
             +     TP+PPPT
Sbjct: 1008 TTLPPTTTPSPPPT 1021

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 45/155 (29%), Positives = 62/155 (39%), Gaps = 4/155 (2%)
 Frame = +1

Query: 22   TSRSSRASPRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL* 201
            T+     +P   +T T T L         SP   +  T P +    P   P + PSP   
Sbjct: 805  TTPPPTTTPSPPITTTTTPLP----TTTPSPPISTTTTPPPTTTPSP---PTTTPSPPTT 857

Query: 202  LRRVLRFSCATWPATLVPST--SSPSLPPAVWA*FAVTTSTSLRLAA*T--PPRPCPCSS 369
                   +  T P T  PS   ++P  PPA       TT+ S      T  PP   P   
Sbjct: 858  TPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPP 917

Query: 370  LTAPLSTPPTPSSSAPTPSSTPSSSCRPTPAPPPT 474
             T P++  PT +++ P P++TPS     T  PPPT
Sbjct: 918  TTTPITP-PTSTTTLP-PTTTPSPPPTTTTTPPPT 950

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
 Frame = +1

Query: 214  LRFSCATWP-----ATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPC-----PC 363
            +R +C  WP      T  P T++PS PP        TT+ S      T P P      P 
Sbjct: 759  IRVNCC-WPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPI 817

Query: 364  SSLTAPL--STPPTP--SSSAPTPSSTPSSSCRPTPAPPPTQDKKKKTKQKT 507
            ++ T PL  +TP  P  +++ P P++TPS     TP+PP T      T   T
Sbjct: 818  TTTTTPLPTTTPSPPISTTTTPPPTTTPSPP-TTTPSPPTTTPSPPTTTTTT 868

 Score = 41.2 bits (95), Expect = 0.010
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
 Frame = +1

Query: 109  SPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPSTSSPSLPPAV 288
            SP   +  TLP +    P     + P PT            T P+  + +T++P LP   
Sbjct: 782  SPPPTTTTTLPPTTTPSPPTTTTTTPPPT------------TTPSPPITTTTTP-LPTTT 828

Query: 289  WA*FAVTTSTSLRLAA*TPPRPCPCSSLTAP-----LSTPPTPSSSAPTPSSTPSSSCRP 453
             +    TT+T       +PP   P    T P      +T P P+++   P +TP +    
Sbjct: 829  PSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPAS 888

Query: 454  TPAPPPTQDKKKKTKQKT 507
            T   PPT      T   T
Sbjct: 889  TTTLPPTTTPSPPTTTTT 906

 Score = 40.8 bits (94), Expect = 0.013
 Identities = 45/153 (29%), Positives = 66/153 (42%), Gaps = 11/153 (7%)
 Frame = +1

Query: 43   SPRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRF 222
            +P T  T+T T     P     SP   +  T P +    PS    + PSP +        
Sbjct: 999  TPITPPTSTTTL----PPTTTPSPPPTTTTTPPPTTT--PSPPTTTTPSPPI-------T 1045

Query: 223  SCATWPATLVPS---TSSPSLPPAVWA*FAVTTSTSLRL------AA*TPPRPCPCSSLT 375
            +  T P T  PS   T++PS P       + TT+ S  +      ++ T P P P +  T
Sbjct: 1046 TTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTT 1105

Query: 376  -APLSTPPTPSSSAPT-PSSTPSSSCRPTPAPP 468
             +P +TP  P+++  T P +T SS    TP PP
Sbjct: 1106 PSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPP 1138

 Score = 38.9 bits (89), Expect = 0.051
 Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
 Frame = +1

Query: 46   PRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFS 225
            P T  +   T     P     +P   +  + P +    P     + PSPT         S
Sbjct: 1028 PTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTT------TPS 1081

Query: 226  CATWPATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*T--PPRPCPCSSLTAPLSTPPT 399
                  T   ST++PS PP      + TT+ S      T  PP        T PL    T
Sbjct: 1082 SPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSIT 1141

Query: 400  PSSSAPTPSSTPSSSCRP 453
            P + +P  ++TP++ C P
Sbjct: 1142 PPTFSPFSTTTPTTPCVP 1159

>gb|AAA59875.1| mucin
          Length = 573

 Score = 55.8 bits (133), Expect = 4e-07
 Identities = 46/155 (29%), Positives = 66/155 (41%), Gaps = 11/155 (7%)
 Frame = +1

Query: 43  SPRTVLTA---TLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRV 213
           SP T  T    T+T     P      P   +    P++  + P+  P + P+ T  L   
Sbjct: 237 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 296

Query: 214 LRFSCATWPATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTP 393
              S      T  P T++PS P        +TT+T+       PP   P S +T   S P
Sbjct: 297 TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTT------PPPTTTPSSPITTTPS-P 349

Query: 394 PTPSSSAPTPSSTPSS--------SCRPTPAPPPT 474
           PT + + P+P++TPSS        S   TP+PPPT
Sbjct: 350 PTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPT 384

 Score = 54.7 bits (130), Expect = 9e-07
 Identities = 42/145 (28%), Positives = 58/145 (39%), Gaps = 2/145 (1%)
 Frame = +1

Query: 46  PRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFS 225
           P T  T   T     P     SP   +  T P +    P     + P PT         +
Sbjct: 224 PTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPT---------T 274

Query: 226 CATWPAT--LVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPT 399
             + P T  + P TS+ +LPP        TT+T       TPP     S  T    +PP 
Sbjct: 275 TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTT-------TPPPTTTPSPPTTTTPSPPI 327

Query: 400 PSSSAPTPSSTPSSSCRPTPAPPPT 474
            +++ P P++TPSS    TP+PP T
Sbjct: 328 TTTTTPPPTTTPSSPITTTPSPPTT 352

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
 Frame = +1

Query: 112 PRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPSTSSPSLPPAVW 291
           P   +    P++  + P+  P + P+ T  L      S  T   T  P T++PS PP   
Sbjct: 145 PTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPS-PPTTT 203

Query: 292 A*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLST-----------PPTPSSSAPTPSSTPS 438
                T++T+L     T P P P ++ T P +T           PPT +++ P P++TPS
Sbjct: 204 PITPPTSTTTLPPT--TTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPS 261

Query: 439 SSCRPTPAPPPT 474
                T  PPPT
Sbjct: 262 PPTTTTTTPPPT 273

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
 Frame = +1

Query: 22  TSRSSRASPRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL* 201
           T+ ++   P T  +  +T     P     SP   +  T P +    P   P + PSP   
Sbjct: 84  TTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSP---PTTTPSPPTT 140

Query: 202 LRRVLRFSCATWPATLVPS--TSSPSLPPAVWA*FAVTTSTSLRLAA*T--PPRPCPCSS 369
                  +  T P T  PS  T++P  PPA       TT+ S      T  PP   P   
Sbjct: 141 TPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPP 200

Query: 370 LTAPLSTPPTPSSSAPTPSSTPSSSCRPTPAPPPT 474
            T P++  PT +++ P P++TPS     T  PPPT
Sbjct: 201 TTTPITP-PTSTTTLP-PTTTPSPPPTTTTTPPPT 233

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
 Frame = +1

Query: 127 CATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPS--TSSPSLPPAVWA*F 300
           C T PS     PS      P PT         S  T P T  PS  T++ + PP      
Sbjct: 53  CITTPSPPTTTPS------PPPT---------STTTLPPTTTPSPPTTTTTTPPPTTTPS 97

Query: 301 AVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSAPTPSSTPSSSCRPTPAPPPT 474
              T+T+      TP  P   ++   P +TP  P+++   P++TPS     T  PPPT
Sbjct: 98  PPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPT 155

 Score = 48.1 bits (113), Expect = 8e-05
 Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
 Frame = +1

Query: 109 SPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPS---------- 258
           SP   S  TLP +    P     + P PT      +  +  T P T  PS          
Sbjct: 65  SPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPIT-TTTTPPPTTTPSPPISTTTTPP 123

Query: 259 -TSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSAPT--PSS 429
            T++PS PP        TT +       TPP   P ++ + P +TP TP +S  T  P++
Sbjct: 124 PTTTPS-PPTTTPSPPTTTPSPPTTTTTTPP---PTTTPSPPTTTPITPPASTTTLPPTT 179

Query: 430 TPSSSCRPTPAPPPT 474
           TPS     T  PPPT
Sbjct: 180 TPSPPTTTTTTPPPT 194

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 37/124 (29%), Positives = 56/124 (44%), Gaps = 7/124 (5%)
 Frame = +1

Query: 124 SCATLPSSAAARPSALPRSAPSPTL*LRRVLRFSCATWPATLVPS---TSSPSLPPAVWA 294
           S  TLP +    P     + P PT         +  + P T  PS   T++ + PP    
Sbjct: 289 STTTLPPTTTPSPPPTTTTTPPPT---------TTPSPPTTTTPSPPITTTTTPPPTTTP 339

Query: 295 *FAVTTSTSLRLAA*TPPRPCPCSSLTAPLSTPPTPSSSAPTPSSTPSSSCRP----TPA 462
              +TT+ S      T   P P ++ ++P++T  TPSS+  TPS  P++   P    TP+
Sbjct: 340 SSPITTTPSPPTT--TMTTPSPTTTPSSPITTTTTPSSTT-TPSPPPTTMTTPSPTTTPS 396

Query: 463 PPPT 474
           PP T
Sbjct: 397 PPTT 400

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 41/134 (30%), Positives = 52/134 (38%), Gaps = 17/134 (12%)
 Frame = +1

Query: 124 SCATLPSSAAARPSAL------PRSAPSPTL*LRRVLRFSCATWPATLVPS---TSSPSL 276
           S  TLP +    P         P + PSP          S  T P T  PS   T++ + 
Sbjct: 171 STTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTP 230

Query: 277 PPAVWA*FAVTTSTSLRLAA*T--PPRPCPCSSLTAPLSTPPTPSSSAPT------PSST 432
           PP        TT+ S      T  PP   P    T   + PPT + S PT      P+ST
Sbjct: 231 PPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTST 290

Query: 433 PSSSCRPTPAPPPT 474
            +     TP+PPPT
Sbjct: 291 TTLPPTTTPSPPPT 304

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 35/112 (31%), Positives = 46/112 (40%), Gaps = 14/112 (12%)
 Frame = +1

Query: 214 LRFSCATWP-----ATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*T--PPRPCPCSSL 372
           +R +C  WP      T  P T++PS PP        TT+ S      T  PP   P   +
Sbjct: 42  IRVNCC-WPMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPI 100

Query: 373 TAPLSTPPTPSSS-------APTPSSTPSSSCRPTPAPPPTQDKKKKTKQKT 507
           T   + PPT + S        P P++TPS     TP+PP T      T   T
Sbjct: 101 TTTTTPPPTTTPSPPISTTTTPPPTTTPSPP-TTTPSPPTTTPSPPTTTTTT 151

 Score = 40.8 bits (94), Expect = 0.013
 Identities = 45/153 (29%), Positives = 66/153 (42%), Gaps = 11/153 (7%)
 Frame = +1

Query: 43  SPRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRF 222
           +P T  T+T T     P     SP   +  T P +    PS    + PSP +        
Sbjct: 282 TPITPPTSTTTL----PPTTTPSPPPTTTTTPPPTTT--PSPPTTTTPSPPI-------T 328

Query: 223 SCATWPATLVPS---TSSPSLPPAVWA*FAVTTSTSLRL------AA*TPPRPCPCSSLT 375
           +  T P T  PS   T++PS P       + TT+ S  +      ++ T P P P +  T
Sbjct: 329 TTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTT 388

Query: 376 -APLSTPPTPSSSAPT-PSSTPSSSCRPTPAPP 468
            +P +TP  P+++  T P +T SS    TP PP
Sbjct: 389 PSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPP 421

 Score = 38.9 bits (89), Expect = 0.051
 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 2/138 (1%)
 Frame = +1

Query: 46  PRTVLTATLTALCWRPWCRVRSPRACSCATLPSSAAARPSALPRSAPSPTL*LRRVLRFS 225
           P T  +   T     P     +P   +  + P +    P     + PSPT         S
Sbjct: 311 PTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTT------TPS 364

Query: 226 CATWPATLVPSTSSPSLPPAVWA*FAVTTSTSLRLAA*TPPRPCPCSS--LTAPLSTPPT 399
                 T   ST++PS PP      + TT+ S      T   P   SS   T PL    T
Sbjct: 365 SPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSIT 424

Query: 400 PSSSAPTPSSTPSSSCRP 453
           P + +P  ++TP++ C P
Sbjct: 425 PPTFSPFSTTTPTTPCVP 442



EST assemble image


clone accession position
1 MXL073d08_r BP097307 1 448
2 LCL028f06_r AV627565 12 354
3 CM024a06_r AV388259 74 573




Chlamydomonas reinhardtii
Kazusa DNA Research Institute