KCC001177A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001177A_C01 KCC001177A_c01
caccaacagtagtaaccatGCAGTGCTCAACAATGCAGCAGCAGAAGCTGGCTGGTCGCC
GTGAGGCCAAGGCCGCCGCGCAGAAGGCGTGCGCTGGCGTTCGCGTCGCAGGTGCTTCTG
CCCGCGTGCCTGTGAGCACTGTGCGCCAGGCGACCTCCTCGGTGCGCGCTGCGAGCCGTG
CTACCTCGGTGAAGGTCCAGGCGACTGCTACGGTTGAGAAGGCGACCGCTCCTGCTGGCT
CGCTAAGCAGCAACGGTGCCGGCACGCGCGTCATGATCATCGGTGGCGATGGCTACTGCG
GCTGGGCGACTGCTCTGCACCTGTCGGCGCGTGGCTACGAGGTGTGCATCGTGGACAACC
TGTGCCGCCGCCAGTTCGACCTGCAGCTAGGTCTGGACACCCTGACCCCCATCGCCACCA
TCCACGACCGCGTGCGTCGCTGGGGTGAGGTCTCGGGCAAGCACATCTCCCTGCAGATCG
GCGACATCTGCGACTGGGAGTTCCTGTCCCAGGCCTTCACCATGCTTCAGCCCAAACATG
TGGTGCACTTCGGCGAGCAGCGCTCGGCCCCTACTCATGATTGACGCAGAAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001177A_C01 KCC001177A_c01
         (593 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC82433.1| UDP-sulfoquinovose synthase [Chlamydomonas reinh...   362  2e-99
ref|NP_195029.1| UDP-sulfoquinovose synthase (sulfite:UDP-glucos...   165  5e-40
pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wil...   163  1e-39
pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Prote...   163  1e-39
gb|AAO39667.1| UDP-sulfoquinovose synthase SQD1 [Spinacia oleracea]   163  1e-39

>dbj|BAC82433.1| UDP-sulfoquinovose synthase [Chlamydomonas reinhardtii]
          Length = 479

 Score =  362 bits (929), Expect = 2e-99
 Identities = 181/185 (97%), Positives = 182/185 (97%)
 Frame = +3

Query: 18  MQCSTMQQQKLAGRREAKAAAQKACAGVRVAGASARVPVSTVRQATSSVRAASRATSVKV 197
           MQCSTMQQQKLAGRREAKAAAQKACAGVRVAGASARVPVSTVRQATSSVRAASRATSVKV
Sbjct: 1   MQCSTMQQQKLAGRREAKAAAQKACAGVRVAGASARVPVSTVRQATSSVRAASRATSVKV 60

Query: 198 QATATVEKATAPAGSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVDNLCRRQF 377
           QATATVEKATAPAGSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVDNLCRRQF
Sbjct: 61  QATATVEKATAPAGSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVDNLCRRQF 120

Query: 378 DLQLGLDTLTPIATIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFTMLQPKHVVHFGE 557
           DLQLGLDTLTPIATIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFT  +P HVVHFGE
Sbjct: 121 DLQLGLDTLTPIATIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFTSFKPNHVVHFGE 180

Query: 558 QRSAP 572
           QRSAP
Sbjct: 181 QRSAP 185

>ref|NP_195029.1| UDP-sulfoquinovose synthase (sulfite:UDP-glucose sulfotransferase)
           (sulfolipid biosynthesis protein) (SQD1) [Arabidopsis
           thaliana] gi|7447130|pir||T05311 sulfolipid biosynthesis
           protein SQD1, chloroplast [validated] - Arabidopsis
           thaliana gi|2736155|gb|AAB94073.1| sulfolipid
           biosynthesis protein [Arabidopsis thaliana]
           gi|3688184|emb|CAA21212.1| sulfolipid biosynthesis
           protein SQD1 [Arabidopsis thaliana]
           gi|7270250|emb|CAB80020.1| sulfolipid biosynthesis
           protein SQD1 [Arabidopsis thaliana]
           gi|14190483|gb|AAK55722.1|AF380641_1
           AT4g33030/F26P21_150 [Arabidopsis thaliana]
           gi|21360527|gb|AAM47379.1| AT4g33030/F26P21_150
           [Arabidopsis thaliana]
          Length = 477

 Score =  165 bits (417), Expect = 5e-40
 Identities = 80/132 (60%), Positives = 99/132 (74%)
 Frame = +3

Query: 177 RATSVKVQATATVEKATAPAGSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVD 356
           RAT+V +   A  E +T      +S+    RVM+IGGDGYCGWATALHLS + YEVCIVD
Sbjct: 61  RATAVPITQQAPPETSTN-----NSSSKPKRVMVIGGDGYCGWATALHLSKKNYEVCIVD 115

Query: 357 NLCRRQFDLQLGLDTLTPIATIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFTMLQPK 536
           NL RR FD QLGL++LTPIA+IHDR+ RW  ++GK I L +GDICD+EFL+++F   +P 
Sbjct: 116 NLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPD 175

Query: 537 HVVHFGEQRSAP 572
            VVHFGEQRSAP
Sbjct: 176 SVVHFGEQRSAP 187

>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
           Sqd1, With Nad And Udp-Glucose
          Length = 404

 Score =  163 bits (413), Expect = 1e-39
 Identities = 75/112 (66%), Positives = 91/112 (80%)
 Frame = +3

Query: 237 GSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVDNLCRRQFDLQLGLDTLTPIA 416
           GS   +  G+RVM+IGGDGYCGWATALHLS + YEVCIVDNL RR FD QLGL++LTPIA
Sbjct: 3   GSHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIA 62

Query: 417 TIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFTMLQPKHVVHFGEQRSAP 572
           +IHDR+ RW  ++GK I L +GDICD+EFL+++F   +P  VVHFGEQRSAP
Sbjct: 63  SIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAP 114

>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
           With Nad And Udp-SulfoquinovoseUDP-Glucose
           gi|33357046|pdb|1I2C|A Chain A, Crystal Structure Of
           Mutant T145a Sqd1 Protein Complex With Nad And
           Udp-Glucose
          Length = 404

 Score =  163 bits (413), Expect = 1e-39
 Identities = 75/112 (66%), Positives = 91/112 (80%)
 Frame = +3

Query: 237 GSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVDNLCRRQFDLQLGLDTLTPIA 416
           GS   +  G+RVM+IGGDGYCGWATALHLS + YEVCIVDNL RR FD QLGL++LTPIA
Sbjct: 3   GSHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIA 62

Query: 417 TIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFTMLQPKHVVHFGEQRSAP 572
           +IHDR+ RW  ++GK I L +GDICD+EFL+++F   +P  VVHFGEQRSAP
Sbjct: 63  SIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAP 114

>gb|AAO39667.1| UDP-sulfoquinovose synthase SQD1 [Spinacia oleracea]
          Length = 482

 Score =  163 bits (413), Expect = 1e-39
 Identities = 77/132 (58%), Positives = 96/132 (72%)
 Frame = +3

Query: 177 RATSVKVQATATVEKATAPAGSLSSNGAGTRVMIIGGDGYCGWATALHLSARGYEVCIVD 356
           RAT+V +      E  T+   +  +     RVM+IGGDGYCGWATALHLS + Y+VCIVD
Sbjct: 61  RATTVPLNQETKAESGTSSFENNGNTSGRKRVMVIGGDGYCGWATALHLSKKNYDVCIVD 120

Query: 357 NLCRRQFDLQLGLDTLTPIATIHDRVRRWGEVSGKHISLQIGDICDWEFLSQAFTMLQPK 536
           NL RR FD QLGLD+LTPIA+I +R+RRW  ++GK I L +GDICD+EFL++ F   +P 
Sbjct: 121 NLVRRLFDHQLGLDSLTPIASIQNRIRRWQGLTGKTIDLHVGDICDFEFLAETFKSFEPD 180

Query: 537 HVVHFGEQRSAP 572
            VVHFGEQRSAP
Sbjct: 181 TVVHFGEQRSAP 192



EST assemble image


clone accession position
1 LCL049b08_r AV628933 1 297
2 CM023h12_r AV387788 13 593
3 HCL018b10_r AV640552 21 480




Chlamydomonas reinhardtii
Kazusa DNA Research Institute