KCC001174A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001174A_C01 KCC001174A_c01
gcacgagactgttagaaaCTTTTCTTGATCGTATTGGCTGATAGCGCCCACATTGCGTAA
GCGGAAGAAAATGCGTTGCTTGCGCAGTTCCGGCTTTGCGAGCGCCCCTCGTCCGTGCCG
CATGATCACGGGGAATGCACGATCTCGGGCGTTGACATTGTGTCCGCAATCCCTGCTCAA
AGTGACCGCGGACGCGCTGCCGGCGGGGCGCTCAGTAAGCTGGTCGCAAACCGCAGACGA
GGTGTCGCTGACAGTGCCAGTGAGCGAGGGCGTTAAGGGGCGAGACGTGAAGCTAGAGGT
GCATCCCAAGCGCCTGCGCCTGTCTGTGGGCGGCAAGGCGGTGCTGGAGGGTGGGCTGGA
GGACGCGGGCGAGGTGGCGGTTGATGACTGCTTCTGGACCATGGAGACGGACTCTGCCGG
CGACCGCTATGTGGCTGTGACGCTGTCCAAGCGCACCATGGGCTATATGAGTTGGGAGGC
GCTGCTGGAGAGCGACCGCCCGGACACCTCAGTCACATCCAGGGTAGCGCTCAAGGTGAG
CATTGGTGGCGAGCCGGCCGGTGCGGTGGTGTGCGGGCTGTACGGCAACACCGTGCCCAA
GACTGTGGAGAACTTCCGGGCGCTGGCCACTGGCGAGAAGGGCAAGTCGGAGGTCAGTGG
CGTGGAGCTCAGCTTCAAGGGCAGCAAGTTCCACCGCATCATTCCGGGCTTCATGATCCA
GGGTGGCGACTTCACGCACGGTGATGGCACTGGTGGCGAGTCCATTTACGGCGAGCGCTT
CGAGGATGAGAACTTCAAGCTGCGGCATGACACTGCCGGGCTCCTGGCTATGGCCAATGC
TGGACCAGGAACAACGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001174A_C01 KCC001174A_c01
         (858 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD48893.1|AF053068_1 cyclophilin B [Dictyostelium discoideum...   162  7e-39
ref|NP_868477.1| peptidylprolyl isomerase [Pirellula sp.] gi|324...   158  1e-37
ref|NP_567029.1| cyclophilin-related protein [Arabidopsis thalia...   153  4e-36
ref|NP_200679.1| cyclophilin ROC7 [Arabidopsis thaliana] gi|1127...   152  9e-36
ref|NP_180557.1| cyclophilin [Arabidopsis thaliana] gi|7437323|p...   151  1e-35

>gb|AAD48893.1|AF053068_1 cyclophilin B [Dictyostelium discoideum]
           gi|5731994|gb|AAD48910.1|AF123597_1 cyclophilin B
           [Dictyostelium discoideum]
          Length = 197

 Score =  162 bits (410), Expect = 7e-39
 Identities = 78/117 (66%), Positives = 90/117 (76%)
 Frame = +2

Query: 503 DTSVTSRVALKVSIGGEPAGAVVCGLYGNTVPKTVENFRALATGEKGKSEVSGVELSFKG 682
           D  +T++V   + I  +PAG +V GLYG TVPKTVENFRAL TGEKG    SG  L +K 
Sbjct: 25  DPKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLG-TSGKPLHYKD 83

Query: 683 SKFHRIIPGFMIQGGDFTHGDGTGGESIYGERFEDENFKLRHDTAGLLAMANAGPGT 853
           SKFHRIIP FMIQGGDFT GDGTGGESIYG++F DENFK++H   GLL+MANAGP T
Sbjct: 84  SKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNT 140

>ref|NP_868477.1| peptidylprolyl isomerase [Pirellula sp.]
           gi|32446025|emb|CAD75841.1| peptidylprolyl isomerase
           [Pirellula sp.]
          Length = 207

 Score =  158 bits (399), Expect = 1e-37
 Identities = 77/121 (63%), Positives = 93/121 (76%)
 Frame = +2

Query: 491 SDRPDTSVTSRVALKVSIGGEPAGAVVCGLYGNTVPKTVENFRALATGEKGKSEVSGVEL 670
           +D     VT +V   VSIG EPAG +V GL+G  VPKT ENFRAL+TGEKG+ ++ GV L
Sbjct: 29  ADPAKGEVTHKVYFDVSIGSEPAGRIVLGLFGKDVPKTAENFRALSTGEKGEGKL-GVPL 87

Query: 671 SFKGSKFHRIIPGFMIQGGDFTHGDGTGGESIYGERFEDENFKLRHDTAGLLAMANAGPG 850
            F+GS FHR+IPGFM+QGGDFT G+GTGGESIYG +F DENFK +H T GLL+MAN+G  
Sbjct: 88  DFEGSAFHRVIPGFMLQGGDFTAGNGTGGESIYGMKFADENFKFQHTTPGLLSMANSGRN 147

Query: 851 T 853
           T
Sbjct: 148 T 148

>ref|NP_567029.1| cyclophilin-related protein [Arabidopsis thaliana]
           gi|21618029|gb|AAM67079.1| cyclophilin-like protein
           [Arabidopsis thaliana]
          Length = 228

 Score =  153 bits (386), Expect = 4e-36
 Identities = 73/112 (65%), Positives = 85/112 (75%)
 Frame = +2

Query: 512 VTSRVALKVSIGGEPAGAVVCGLYGNTVPKTVENFRALATGEKGKSEVSGVELSFKGSKF 691
           VT +V   + I G PAG ++ GL+GN VPKT ENFR+L TGEKG   + G  L FKGS F
Sbjct: 57  VTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGVGNM-GKPLYFKGSSF 115

Query: 692 HRIIPGFMIQGGDFTHGDGTGGESIYGERFEDENFKLRHDTAGLLAMANAGP 847
           HRIIPGFMIQGGDFT GDG GGESIYG++F DENFKL+H   G L+MAN+GP
Sbjct: 116 HRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGFLSMANSGP 167

>ref|NP_200679.1| cyclophilin ROC7 [Arabidopsis thaliana] gi|11270328|pir||T50838
           peptidylprolyl isomerase (EC 5.2.1.8) ROC7 [similarity]
           - Arabidopsis thaliana
           gi|6180043|gb|AAF05760.1|AF192490_1 cyclophilin
           [Arabidopsis thaliana] gi|8843791|dbj|BAA97339.1|
           cyclophilin [Arabidopsis thaliana]
           gi|15081670|gb|AAK82490.1| AT5g58710/mzn1_160
           [Arabidopsis thaliana] gi|20334834|gb|AAM16173.1|
           AT5g58710/mzn1_160 [Arabidopsis thaliana]
           gi|21554366|gb|AAM63473.1| cyclophilin ROC7 [Arabidopsis
           thaliana]
          Length = 204

 Score =  152 bits (383), Expect = 9e-36
 Identities = 74/114 (64%), Positives = 87/114 (75%)
 Frame = +2

Query: 512 VTSRVALKVSIGGEPAGAVVCGLYGNTVPKTVENFRALATGEKGKSEVSGVELSFKGSKF 691
           +T +V   V I G+ AG +V GL+G TVPKTVENFRAL TGEKG  + +G  L +KGS F
Sbjct: 33  ITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGK-NGKALHYKGSSF 91

Query: 692 HRIIPGFMIQGGDFTHGDGTGGESIYGERFEDENFKLRHDTAGLLAMANAGPGT 853
           HRIIP FM+QGGDFTHG+G GGESIYGE+F DENFKL+H   G L+MANAG  T
Sbjct: 92  HRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDT 145

>ref|NP_180557.1| cyclophilin [Arabidopsis thaliana] gi|7437323|pir||T02489
           peptidylprolyl isomerase (EC 5.2.1.8) F23F1.12 -
           Arabidopsis thaliana gi|3420055|gb|AAC31856.1|
           cyclophilin [Arabidopsis thaliana]
           gi|15451026|gb|AAK96784.1| cyclophilin [Arabidopsis
           thaliana] gi|23197720|gb|AAN15387.1| cyclophilin
           [Arabidopsis thaliana]
          Length = 201

 Score =  151 bits (382), Expect = 1e-35
 Identities = 75/114 (65%), Positives = 87/114 (75%)
 Frame = +2

Query: 512 VTSRVALKVSIGGEPAGAVVCGLYGNTVPKTVENFRALATGEKGKSEVSGVELSFKGSKF 691
           VT +V   V I G+ AG VV GL+G  VPKT ENFRAL TGEKG  + SG  L +KGSKF
Sbjct: 30  VTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGK-SGKPLHYKGSKF 88

Query: 692 HRIIPGFMIQGGDFTHGDGTGGESIYGERFEDENFKLRHDTAGLLAMANAGPGT 853
           HRIIP FMIQGGDFTHG+G GGESIYG++F DENFKL+H   G+L+MAN+G  T
Sbjct: 89  HRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDT 142



EST assemble image


clone accession position
1 CM023f08_r AV387820 1 541
2 MX229a01_r BP090775 19 311
3 HC002b05_r AV631954 28 552
4 LC050g06_r AV622521 303 858




Chlamydomonas reinhardtii
Kazusa DNA Research Institute