Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001167A_C01 KCC001167A_c01
(753 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 43 0.006
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 43 0.006
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 43 0.006
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 43 0.006
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300... 42 0.010
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 42.7 bits (99), Expect = 0.006
Identities = 50/163 (30%), Positives = 67/163 (40%), Gaps = 6/163 (3%)
Frame = -1
Query: 474 RAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR-----*RSGTARSTDPGRGRKTIR*RA 310
R+ TP+ S RR+ RS P RR+SR RSG +RS P R R R+
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRS-PVRRRSRSRSPARRSGRSRSRTPAR-----RGRS 658
Query: 309 AHPRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGR-RSAAGVPAWRRH*RRQ 133
+ G + ++ ARR G A RGR RS GR RS + V R H R
Sbjct: 659 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSR-- 716
Query: 132 EHGLTERKPFVPEQRMRKESKKVDSRKGRRNDLHKREVKVISS 4
+R+ RK + R+ R N + + ISS
Sbjct: 717 ---TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 756
Score = 38.1 bits (87), Expect = 0.15
Identities = 43/155 (27%), Positives = 64/155 (40%), Gaps = 9/155 (5%)
Frame = -1
Query: 483 STPRAVTPSPVATRPST---GSCPRRTAARSLPTRR-QSR*RSGTARSTDPGRGRKTIR* 316
S+PR T S PS G R+ +R TR + R RSG+++ST R R+ R
Sbjct: 1749 SSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTS--RRRQRSRS 1806
Query: 315 RAAHPRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGRRSAAGVPA-WRRH*R 139
R+ R+ +GG ++ R RGR R+ + R + PA W+R
Sbjct: 1807 RSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRS 1866
Query: 138 RQEHGL----TERKPFVPEQRMRKESKKVDSRKGR 46
R R P + +R R + V R+ R
Sbjct: 1867 RASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
Score = 36.6 bits (83), Expect = 0.44
Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Frame = -1
Query: 483 STPRAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR*RSGTARSTDPGRGRKTIR*RAAH 304
S+ + PSP T+ S + + + P R S + S + GR
Sbjct: 416 SSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAK------- 468
Query: 303 PRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGRRSAAGVPAWRRH*RRQEHG 124
R HT + RR G A RGR RS T S + P WRR Q G
Sbjct: 469 -RDKSHSHTPS----RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG 523
Query: 123 LT--------ERKPFVPE-QRMRKESKKVDSRKGRRNDLHKR 25
+ R P P R R ++ SR RR H R
Sbjct: 524 RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSR 565
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 42.7 bits (99), Expect = 0.006
Identities = 50/163 (30%), Positives = 67/163 (40%), Gaps = 6/163 (3%)
Frame = -1
Query: 474 RAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR-----*RSGTARSTDPGRGRKTIR*RA 310
R+ TP+ S RR+ RS P RR+SR RSG +RS P R R R+
Sbjct: 395 RSRTPARRGRSRSRTPARRRSRTRS-PVRRRSRSRSPARRSGRSRSRTPAR-----RGRS 448
Query: 309 AHPRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGR-RSAAGVPAWRRH*RRQ 133
+ G + ++ ARR G A RGR RS GR RS + V R H R
Sbjct: 449 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSR-- 506
Query: 132 EHGLTERKPFVPEQRMRKESKKVDSRKGRRNDLHKREVKVISS 4
+R+ RK + R+ R N + + ISS
Sbjct: 507 ---TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 546
Score = 36.6 bits (83), Expect = 0.44
Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Frame = -1
Query: 483 STPRAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR*RSGTARSTDPGRGRKTIR*RAAH 304
S+ + PSP T+ S + + + P R S + S + GR
Sbjct: 206 SSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAK------- 258
Query: 303 PRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGRRSAAGVPAWRRH*RRQEHG 124
R HT + RR G A RGR RS T S + P WRR Q G
Sbjct: 259 -RDKSHSHTPS----RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG 313
Query: 123 LT--------ERKPFVPE-QRMRKESKKVDSRKGRRNDLHKR 25
+ R P P R R ++ SR RR H R
Sbjct: 314 RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSR 355
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 42.7 bits (99), Expect = 0.006
Identities = 50/163 (30%), Positives = 67/163 (40%), Gaps = 6/163 (3%)
Frame = -1
Query: 474 RAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR-----*RSGTARSTDPGRGRKTIR*RA 310
R+ TP+ S RR+ RS P RR+SR RSG +RS P R R R+
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRS-PVRRRSRSRSPARRSGRSRSRTPAR-----RGRS 658
Query: 309 AHPRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGR-RSAAGVPAWRRH*RRQ 133
+ G + ++ ARR G A RGR RS GR RS + V R H R
Sbjct: 659 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSR-- 716
Query: 132 EHGLTERKPFVPEQRMRKESKKVDSRKGRRNDLHKREVKVISS 4
+R+ RK + R+ R N + + ISS
Sbjct: 717 ---TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 756
Score = 38.1 bits (87), Expect = 0.15
Identities = 43/155 (27%), Positives = 64/155 (40%), Gaps = 9/155 (5%)
Frame = -1
Query: 483 STPRAVTPSPVATRPST---GSCPRRTAARSLPTRR-QSR*RSGTARSTDPGRGRKTIR* 316
S+PR T S PS G R+ +R TR + R RSG+++ST R R+ R
Sbjct: 1749 SSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTS--RRRQRSRS 1806
Query: 315 RAAHPRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGRRSAAGVPA-WRRH*R 139
R+ R+ +GG ++ R RGR R+ + R + PA W+R
Sbjct: 1807 RSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRS 1866
Query: 138 RQEHGL----TERKPFVPEQRMRKESKKVDSRKGR 46
R R P + +R R + V R+ R
Sbjct: 1867 RASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
Score = 36.6 bits (83), Expect = 0.44
Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Frame = -1
Query: 483 STPRAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR*RSGTARSTDPGRGRKTIR*RAAH 304
S+ + PSP T+ S + + + P R S + S + GR
Sbjct: 416 SSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAK------- 468
Query: 303 PRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGRRSAAGVPAWRRH*RRQEHG 124
R HT + RR G A RGR RS T S + P WRR Q G
Sbjct: 469 -RDKSHSHTPS----RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG 523
Query: 123 LT--------ERKPFVPE-QRMRKESKKVDSRKGRRNDLHKR 25
+ R P P R R ++ SR RR H R
Sbjct: 524 RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSR 565
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 42.7 bits (99), Expect = 0.006
Identities = 50/163 (30%), Positives = 67/163 (40%), Gaps = 6/163 (3%)
Frame = -1
Query: 474 RAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR-----*RSGTARSTDPGRGRKTIR*RA 310
R+ TP+ S RR+ RS P RR+SR RSG +RS P R R R+
Sbjct: 570 RSRTPARRGRSRSRTPARRRSRTRS-PVRRRSRSRSPARRSGRSRSRTPAR-----RGRS 623
Query: 309 AHPRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGR-RSAAGVPAWRRH*RRQ 133
+ G + ++ ARR G A RGR RS GR RS + V R H R
Sbjct: 624 RSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSR-- 681
Query: 132 EHGLTERKPFVPEQRMRKESKKVDSRKGRRNDLHKREVKVISS 4
+R+ RK + R+ R N + + ISS
Sbjct: 682 ---TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 721
Score = 36.6 bits (83), Expect = 0.44
Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 9/162 (5%)
Frame = -1
Query: 483 STPRAVTPSPVATRPSTGSCPRRTAARSLPTRRQSR*RSGTARSTDPGRGRKTIR*RAAH 304
S+ + PSP T+ S + + + P R S + S + GR
Sbjct: 381 SSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAK------- 433
Query: 303 PRQLKGGHTSAQKTARRPGCCARDLGAPRGRRRSGRATSGRRSAAGVPAWRRH*RRQEHG 124
R HT + RR G A RGR RS T S + P WRR Q G
Sbjct: 434 -RDKSHSHTPS----RRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG 488
Query: 123 LT--------ERKPFVPE-QRMRKESKKVDSRKGRRNDLHKR 25
+ R P P R R ++ SR RR H R
Sbjct: 489 RSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSR 530
>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
ENSANGP00000004917 [Anopheles gambiae str. PEST]
Length = 257
Score = 42.0 bits (97), Expect = 0.010
Identities = 45/122 (36%), Positives = 57/122 (45%), Gaps = 17/122 (13%)
Frame = +1
Query: 136 PPSVSPPSRHAGRGAPSRCR-APAASSPARSSKIPCATS-----RAPCSLLCGGMTSFQL 297
PP + P+R A R P RCR APAA SP + P +S R+P S G +
Sbjct: 103 PPPAAAPARRAHR--PPRCRCAPAAPSPPARAFGPWRSSTRSSARSPQSPTAGWRSFAPT 160
Query: 298 ARVRCSSPDGFT-----STARIR----GPRCP*PSP-RLSSRW*RTSCCSPRT-RASRRP 444
R C++ D T S R R G RC P+P S R+ SPRT R++ RP
Sbjct: 161 PRRPCTAADSGTRRTAASGTRCRGTPSGTRCSAPAPCAASPASARSPPVSPRTARSASRP 220
Query: 445 SS 450
SS
Sbjct: 221 SS 222
